pycom11g24520

Guanine nucleotide-binding protein subunit gamma

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0010807
Physical Location & Seq
Reverse (-)
27449805 .. 27451925
2121 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 345 bp
ATGGCGTCCGATACGGCGTCGTCGGTGGAAGAACAGGCGCAGCAGCTGGTTGCTCCTGGTGGTTTAGTCGGAGGAGAAGGAGGAGGGTCCACTGATAAGAGAGGAAGGCATCGGATTCTCGCCGAACTCAGCCGCCTCGAACAAGAACTTAAGTTCTTGCAGGACGAGTTGGGAGAGCTCGAAAGAACCGAAAATGTTTCAACCATTTGTTCAGGATTGCTGCCATACGTCGAAGGCAGGCCAGATCCTCTACTCCCATTAACAAATGGACCTGTAAATCTGGTATGGGATCGATGGTTCGAAGGACCGCAGGATTCACAAAGTTGCAGCTGCTGGATACTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000139 GO:0000166 GO:0001882 GO:0001883 GO:0002376 GO:0003674 GO:0005488 GO:0005525 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0005802 GO:0005834 GO:0005886 GO:0006464 GO:0006497 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009605 GO:0009607 GO:0009620 GO:0009791 GO:0009814 GO:0009817 GO:0009845 GO:0009898 GO:0009914 GO:0009926 GO:0009987 GO:0010541 GO:0010817 GO:0012505 GO:0016020 GO:0017076 GO:0018342 GO:0018345 GO:0019001 GO:0019538 GO:0019897 GO:0019898 GO:0022622 GO:0031090 GO:0031234 GO:0031984 GO:0032501 GO:0032502 GO:0032549 GO:0032550 GO:0032553 GO:0032555 GO:0032561 GO:0032588 GO:0032991 GO:0034645 GO:0035639 GO:0036094 GO:0036211 GO:0042157 GO:0042158 GO:0043167 GO:0043168 GO:0043170 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0045087 GO:0048364 GO:0048527 GO:0048528 GO:0048731 GO:0048856 GO:0050832 GO:0050896 GO:0051179 GO:0051234 GO:0051704 GO:0051707 GO:0060918 GO:0065007 GO:0065008 GO:0071704 GO:0071944 GO:0090351 GO:0090696 GO:0097159 GO:0097354 GO:0097367 GO:0098542 GO:0098552 GO:0098562 GO:0098588 GO:0098791 GO:0098796 GO:0098797 GO:0099402 GO:1901265 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1902494 GO:1905360
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
G-gamma

Protein Analysis

115

Amino Acids

12.44

Weight (kDa)

4.43

Isoelectric Point (pI)

64.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
G-gamma PF00631 43 - 114 5.9e-13 GGL domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010807)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G63420 AT3G63420 AT3G63420
fragaria_vesca FvH4_2g22840
malus_domestica MD03G1256500.v1.1 MD11G1277200.v1.1
prunus_persica Prupe.8G233500_v2.0.a1
pyrus_communis pycom03g20330 pycom11g24520
rosa_chinensis RchiOBHm_Chr6g0289751
rosa_laevigata RLG00000012269
rosa_multiflora Rmu_sc0005640.1_g000016
rosa_roxburghii Rroxscaffold_7G00177590 Rroxscaffold_7G00178090
rosa_rugosa Rorug06G0206300
rosa_samantha Rh6AG318200 Rh6BG325500 Rh6CG331100 Rh6DG316800
rosa_wichuraiana Rw6G027430

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 133, 308
AclWI GGATC 2 cut(s) 239, 297
AcyI GRCGYC 2 cut(s) 5, 17
AflII CTTAAG 1 cut(s) 149
AgsI TTSAA 1 cut(s) 201
AjnI CCWGG 1 cut(s) 55
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 3 cut(s) 46, 178, 330
AluI AGCT 3 cut(s) 46, 178, 330
Alw21I GWGCWC 1 cut(s) 180
AlwI GGATC 2 cut(s) 239, 297
AlwNI CAGNNNCTG 2 cut(s) 46, 333
AoxI GGCC 1 cut(s) 239
ApeKI GCWGC 5 cut(s) 40, 43, 220, 327, 330
AspLEI GCGC 1 cut(s) 40
AspS9I GGNCC 3 cut(s) 87, 269, 305
AsuII TTCGAA 1 cut(s) 300
AvaII GGWCC 3 cut(s) 87, 269, 305
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 1 cut(s) 180
BbvI GCAGC 5 cut(s) 52, 55, 207, 317, 339
BccI CCATC 1 cut(s) 288
BceAI ACGGC 1 cut(s) 30
BciT130I CCWGG 1 cut(s) 57
BciVI GTATCC 1 cut(s) 330
BfrI CTTAAG 1 cut(s) 149
BfuI GTATCC 1 cut(s) 330
BisI GCNGC 6 cut(s) 41, 44, 133, 221, 328, 331
BlsI GCNGC 6 cut(s) 42, 45, 134, 222, 329, 332
Bme1390I CCNGG 1 cut(s) 57
Bme18I GGWCC 3 cut(s) 87, 269, 305
BmgT120I GGNCC 3 cut(s) 87, 269, 305
BmiI GGNNCC 1 cut(s) 88
BmrFI CCNGG 1 cut(s) 57
BmsI GCATC 1 cut(s) 118
Bpu14I TTCGAA 1 cut(s) 300
Bsa29I ATCGAT 1 cut(s) 292
BsaHI GRCGYC 2 cut(s) 5, 17
BseBI CCWGG 1 cut(s) 57
BseCI ATCGAT 1 cut(s) 292
BseMII CTCAG 1 cut(s) 142
BseRI GAGGAG 2 cut(s) 87, 96
BseXI GCAGC 5 cut(s) 52, 55, 207, 317, 339
BshFI GGCC 1 cut(s) 241
BshVI ATCGAT 1 cut(s) 292
BsiHKAI GWGCWC 1 cut(s) 180
BsnI GGCC 1 cut(s) 241
Bsp119I TTCGAA 1 cut(s) 300
Bsp1286I GDGCHC 1 cut(s) 180
Bsp143I GATC 2 cut(s) 244, 289
BspACI CCGC 2 cut(s) 133, 308
BspANI GGCC 1 cut(s) 241
BspCNI CTCAG 1 cut(s) 141
BspDI ATCGAT 1 cut(s) 292
BspLI GGNNCC 1 cut(s) 88
BspPI GGATC 2 cut(s) 239, 297
BspT104I TTCGAA 1 cut(s) 300
BspTI CTTAAG 1 cut(s) 149
BssMI GATC 2 cut(s) 244, 289
BssNI GRCGYC 2 cut(s) 5, 17
Bst2UI CCWGG 1 cut(s) 57
BstACI GRCGYC 2 cut(s) 5, 17
BstAFI CTTAAG 1 cut(s) 149
BstBI TTCGAA 1 cut(s) 300
BstC8I GCNNGC 1 cut(s) 239
BstDEI CTNAG 1 cut(s) 128
BstHHI GCGC 1 cut(s) 40
BstKTI GATC 2 cut(s) 247, 292
BstMBI GATC 2 cut(s) 244, 289
BstNI CCWGG 1 cut(s) 57
BstSCI CCNGG 1 cut(s) 55
BstV1I GCAGC 5 cut(s) 52, 55, 207, 317, 339
BstX2I RGATCY 1 cut(s) 244
BstYI RGATCY 1 cut(s) 244
Bsu15I ATCGAT 1 cut(s) 292
BsuI GTATCC 1 cut(s) 330
BsuRI GGCC 1 cut(s) 241
BsuTUI ATCGAT 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 239
CaiI CAGNNNCTG 2 cut(s) 46, 333
CfoI GCGC 1 cut(s) 40
Cfr13I GGNCC 3 cut(s) 87, 269, 305
ClaI ATCGAT 1 cut(s) 292
CseI GACGC 1 cut(s) 6
CviJI RGCY 5 cut(s) 46, 132, 178, 241, 330
CviKI_1 RGCY 5 cut(s) 46, 132, 178, 241, 330
DdeI CTNAG 1 cut(s) 128
DpnI GATC 2 cut(s) 246, 291
DpnII GATC 2 cut(s) 244, 289
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco47I GGWCC 3 cut(s) 87, 269, 305
Eco53kI GAGCTC 1 cut(s) 178
EcoICRI GAGCTC 1 cut(s) 178
EcoRII CCWGG 1 cut(s) 55
EcoT38I GRGCYC 1 cut(s) 180
FaiI YATR 2 cut(s) 226, 286
Fnu4HI GCNGC 6 cut(s) 41, 44, 133, 221, 328, 331
FriOI GRGCYC 1 cut(s) 180
Fsp4HI GCNGC 6 cut(s) 41, 44, 133, 221, 328, 331
GlaI GCGC 1 cut(s) 39
GluI GCNGC 6 cut(s) 41, 44, 133, 221, 328, 331
HaeIII GGCC 1 cut(s) 241
HgaI GACGC 1 cut(s) 6
HhaI GCGC 1 cut(s) 40
Hin1I GRCGYC 2 cut(s) 5, 17
Hin6I GCGC 1 cut(s) 38
HinP1I GCGC 1 cut(s) 38
HinfI GANTC 2 cut(s) 115, 314
Hpy166II GTNNAC 1 cut(s) 90
Hpy188I TCNGA 4 cut(s) 10, 71, 114, 344
Hpy188III TCNNGA 1 cut(s) 213
Hpy8I GTNNAC 1 cut(s) 90
Hpy99I CGWCG 3 cut(s) 22, 25, 233
HpyAV CCTTC 4 cut(s) 71, 99, 227, 296
HpyCH4IV ACGT 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 160, 327
HpyF3I CTNAG 1 cut(s) 128
HpySE526I ACGT 1 cut(s) 228
Hsp92I GRCGYC 2 cut(s) 5, 17
HspAI GCGC 1 cut(s) 38
Kzo9I GATC 2 cut(s) 244, 289
LmnI GCTCC 1 cut(s) 58
Lsp1109I GCAGC 5 cut(s) 52, 55, 207, 317, 339
LweI GCATC 1 cut(s) 118
MaeII ACGT 1 cut(s) 228
MalI GATC 2 cut(s) 246, 291
MboI GATC 2 cut(s) 244, 289
MboII GAAGA 1 cut(s) 41
MflI RGATCY 1 cut(s) 244
MhlI GDGCHC 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 6 cut(s) 65, 74, 77, 95, 146, 258
MseI TTAA 2 cut(s) 150, 260
MspA1I CMGCKG 2 cut(s) 46, 330
MspCI CTTAAG 1 cut(s) 149
MspR9I CCNGG 1 cut(s) 57
MvaI CCWGG 1 cut(s) 57
NdeII GATC 2 cut(s) 244, 289
NlaIV GGNNCC 1 cut(s) 88
NspV TTCGAA 1 cut(s) 300
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PfeI GAWTC 2 cut(s) 115, 314
PkrI GCNGC 6 cut(s) 42, 45, 134, 222, 329, 332
Psp124BI GAGCTC 1 cut(s) 180
Psp6I CCWGG 1 cut(s) 55
PspGI CCWGG 1 cut(s) 55
PspN4I GGNNCC 1 cut(s) 88
PspPI GGNCC 3 cut(s) 87, 269, 305
PstNI CAGNNNCTG 2 cut(s) 46, 333
PsuI RGATCY 1 cut(s) 244
PvuII CAGCTG 2 cut(s) 46, 330
SacI GAGCTC 1 cut(s) 180
SaqAI TTAA 2 cut(s) 150, 260
SatI GCNGC 6 cut(s) 41, 44, 133, 221, 328, 331
Sau3AI GATC 2 cut(s) 244, 289
Sau96I GGNCC 3 cut(s) 87, 269, 305
ScrFI CCNGG 1 cut(s) 57
SduI GDGCHC 1 cut(s) 180
SetI ASST 5 cut(s) 48, 180, 231, 274, 332
SfaNI GCATC 1 cut(s) 118
SfuI TTCGAA 1 cut(s) 300
SinI GGWCC 3 cut(s) 87, 269, 305
SmlI CTYRAG 1 cut(s) 149
SmoI CTYRAG 1 cut(s) 149
SsiI CCGC 2 cut(s) 133, 308
SstI GAGCTC 1 cut(s) 180
StyD4I CCNGG 1 cut(s) 55
TaiI ACGT 1 cut(s) 231
TaqI TCGA 5 cut(s) 138, 180, 231, 292, 300
TauI GCSGC 1 cut(s) 135
TfiI GAWTC 2 cut(s) 115, 314
Tru1I TTAA 2 cut(s) 150, 260
Tru9I TTAA 2 cut(s) 150, 260
TscAI CASTG 1 cut(s) 97
TseI GCWGC 5 cut(s) 40, 43, 220, 327, 330
TspRI CASTG 1 cut(s) 97
Vha464I CTTAAG 1 cut(s) 149
VpaK11BI GGWCC 3 cut(s) 87, 269, 305
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.