Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0005620

Physical Location & Seq

Genomic Coordinates Reverse (-)

27566466 .. 27568801

Gene Structure 2336 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1122 bp

ATGACAACCGCAGCTCTGCCTTTTATCTTGCATTTCAACAGCAACCCATTGAAAGAAGAGTACCCGGGTTCGACTTCGACTCAATCGGGTCCAGATTTCGACCCGATGGTGATGATGATCCCTCCGCCGCAGCCGATGGAGGGCCTGAACGACACGGGCCCTCCGCCGTTTCTGAACAAGACATACGATATGGTGGACGACCCGGTTTCGAATCGGGTCGTGTCGTGGAGCAGGGAAGGGGGGAGCTTTGTGGTGTGGGACCCACATACTTTTGTGATGAGCCTCCTGCCTAGGTACTTCAAGCACAATAATTTCTCAAGCTTTGTGAGGCAGCTCAACACTTACGGTTTTAGAAAGGTTGATCCTGACCGATGGGAGTTTGCCAATGAAGGATTTGTAAGGGGTCAGAAGCATCTTTTGAAGAACATTAAAAGAAGAAAGGCACCTTCTCAGCCTTTTCCGGCACAGCAAACTGTCGGCACTTGTGTGGAACTTGGCCAGTTTGGGCTGGATGGAGAAGTTGATCGGTTGCGGCGTGACAAGCAGGTTCTAATGATGGAACTAGTGAAGCTTAGGCAGCAGCAGCAGAGTACTAGAGCCTACCTTCAGGCCATGGAACAAAGGTTACAAAAGACAGAAATGAAGCAGCGGCAGATGATGGCTTTCTTGGCAAGGGCAATGCAGAACCCGGCTTTTATACAGCAGCTTGTCCAACACAAGGAGAAAAGGAAGGAGCTTGATGAGGCAATGACTAAGAAAAGGAGGAGGCCAATTGATCAAGGAACTAGTGGTGTTGGTGGTGGCGAATCAAGCCTAAGAGGCAAAGGAATAAACCCAGTTAAAAATGAGCCTCTTGAATTTGGCGATTGTGAGTATGAAATGTCGGAGCTAGAAGCACTTGCGATGGAAATGCAAGGATTAGGTAAGGTGAGAAAGGAACAGGGGGAAGTGGTAGAGCCACTAGATAGCGGGGATAAAGAGCTTGATGAAGGATTTTGGGAAGAACTATTTAGTGAGAGATTTAAGGGAGACTTGACCATTCCGAGTGCTGAAGTAGGCGAAGATGAAGATGTGATTATCTTGGCTGATCGCTTAGGTTACGTAGGTTCATCCCCAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009408 GO:0009416 GO:0009628 GO:0009642 GO:0009644 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032268 GO:0042802 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051246 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko00270 ko01100 map00270 map01100

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

374

Amino Acids

42.49

Weight (kDa)

5.63

Isoelectric Point (pI)

48.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HSF_DNA-bind	PF00447	57 - 146	3e-30	HSF-type DNA-binding

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G51910
fragaria_vesca	FvH4_2g23000 FvH4_2g23000
malus_domestica	MD03G1258300.v1.1 MD11G1278900.v1.1
prunus_persica	Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1 Prupe.8G234900_v2.0.a1
pyrus_communis	pycom03g20460 pycom11g24650
rosa_chinensis	RchiOBHm_Chr6g0290041
rosa_laevigata	RLG00000012252
rosa_multiflora	Rmu_co8347871.1_g000001 Rmu_sc0002902.1_g000045 Rmu_sc0003927.1_g000002
rosa_roxburghii	Rroxscaffold_7G00177400
rosa_rugosa	Rorug06G0208300 Rorug06G0208400
rosa_samantha	Rh6AG319900 Rh6BG327000 Rh6CG332800 Rh6DG318700
rosa_wichuraiana	Rw6G027600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	535
AccB1I	GGYRCC	1 cut(s)	442
AciI	CCGC	7 cut(s)	9, 125, 128, 164, 532, 649, 969
AclWI	GGATC	2 cut(s)	112, 356
AcoI	YGGCCR	1 cut(s)	496
AcsI	RAATTY	1 cut(s)	857
AcuI	CTGAAG	2 cut(s)	590, 1071
AfaI	GTAC	3 cut(s)	62, 296, 592
AfiI	CCNNNNNNNGG	2 cut(s)	140, 718
AgsI	TTSAA	5 cut(s)	37, 52, 301, 421, 857
AhlI	ACTAGT	2 cut(s)	562, 785
AleI	CACNNNNGTG	1 cut(s)	485
AluBI	AGCT	9 cut(s)	14, 246, 321, 334, 571, 706, 736, 889, 982
AluI	AGCT	9 cut(s)	14, 246, 321, 334, 571, 706, 736, 889, 982
Alw26I	GTCTC	1 cut(s)	1023
AlwI	GGATC	2 cut(s)	112, 356
Ama87I	CYCGRG	1 cut(s)	64
AoxI	GGCC	5 cut(s)	142, 157, 496, 609, 767
ApaI	GGGCCC	1 cut(s)	161
ApeKI	GCWGC	8 cut(s)	11, 130, 331, 577, 580, 583, 646, 703
ApoI	RAATTY	1 cut(s)	857
AspA2I	CCTAGG	1 cut(s)	290
AspS9I	GGNCC	5 cut(s)	89, 142, 157, 158, 259
AsuC2I	CCSGG	4 cut(s)	65, 66, 203, 689
AsuHPI	GGTGA	2 cut(s)	121, 940
AsuII	TTCGAA	1 cut(s)	209
AvaI	CYCGRG	1 cut(s)	64
AvaII	GGWCC	2 cut(s)	89, 259
AvrII	CCTAGG	1 cut(s)	290
BaeGI	GKGCMC	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	498
BanI	GGYRCC	1 cut(s)	442
BanII	GRGCYC	1 cut(s)	161
BbvI	GCAGC	8 cut(s)	23, 142, 343, 589, 592, 595, 658, 715
BccI	CCATC	7 cut(s)	100, 130, 366, 506, 550, 652, 898
BceAI	ACGGC	1 cut(s)	151
BcgI	CGANNNNNNTGC	2 cut(s)	892, 926
BclI	TGATCA	1 cut(s)	775
BcnI	CCSGG	4 cut(s)	65, 66, 203, 689
BcoDI	GTCTC	1 cut(s)	1023
BcuI	ACTAGT	2 cut(s)	562, 785
BfaI	CTAG	6 cut(s)	291, 563, 594, 786, 890, 962
BfuAI	ACCTGC	1 cut(s)	535
BglI	GCCNNNNNGGC	1 cut(s)	819
BlnI	CCTAGG	1 cut(s)	290
BmcAI	AGTACT	1 cut(s)	592
Bme1390I	CCNGG	4 cut(s)	65, 66, 203, 689
Bme18I	GGWCC	2 cut(s)	89, 259
BmeT110I	CYCGRG	1 cut(s)	64
BmgT120I	GGNCC	5 cut(s)	89, 142, 157, 158, 259
BmiI	GGNNCC	5 cut(s)	90, 159, 260, 261, 444
BmrFI	CCNGG	4 cut(s)	65, 66, 203, 689
BmrI	ACTGGG	1 cut(s)	830
BmsI	GCATC	1 cut(s)	421
BmuI	ACTGGG	1 cut(s)	830
Bpu10I	CCTNAGC	2 cut(s)	572, 1093
Bpu14I	TTCGAA	1 cut(s)	209
BpuEI	CTTGAG	1 cut(s)	301
BpuMI	CCSGG	4 cut(s)	65, 66, 203, 689
BsaAI	YACGTR	1 cut(s)	1102
BsaBI	GATNNNNATC	1 cut(s)	116
BsaJI	CCNNGG	3 cut(s)	64, 290, 612
BsaXI	ACNNNNNCTCC	2 cut(s)	145, 175
Bsc4I	CCNNNNNNNGG	2 cut(s)	140, 718
Bse1I	ACTGG	2 cut(s)	499, 836
Bse3DI	GCAATG	2 cut(s)	684, 753
Bse8I	GATNNNNATC	1 cut(s)	116
BseDI	CCNNGG	3 cut(s)	64, 290, 612
BseGI	GGATG	2 cut(s)	517, 1109
BseJI	GATNNNNATC	1 cut(s)	116
BseLI	CCNNNNNNNGG	2 cut(s)	140, 718
BseMI	GCAATG	2 cut(s)	684, 753
BseMII	CTCAG	1 cut(s)	464
BseNI	ACTGG	2 cut(s)	499, 836
BseRI	GAGGAG	1 cut(s)	778
BseSI	GKGCMC	1 cut(s)	161
BseXI	GCAGC	8 cut(s)	23, 142, 343, 589, 592, 595, 658, 715
BshFI	GGCC	5 cut(s)	144, 159, 498, 611, 769
BshNI	GGYRCC	1 cut(s)	442
BsiHKCI	CYCGRG	1 cut(s)	64
BsiSI	CCGG	4 cut(s)	65, 203, 461, 689
BslFI	GGGAC	1 cut(s)	272
BslI	CCNNNNNNNGG	2 cut(s)	140, 718
BsmAI	GTCTC	1 cut(s)	1023
BsmFI	GGGAC	1 cut(s)	272
BsnI	GGCC	5 cut(s)	144, 159, 498, 611, 769
BsoBI	CYCGRG	1 cut(s)	64
Bsp119I	TTCGAA	1 cut(s)	209
Bsp120I	GGGCCC	1 cut(s)	157
Bsp1286I	GDGCHC	1 cut(s)	161
Bsp143I	GATC	5 cut(s)	117, 361, 523, 775, 1087
Bsp19I	CCATGG	1 cut(s)	612
BspACI	CCGC	7 cut(s)	9, 125, 128, 164, 532, 649, 969
BspANI	GGCC	5 cut(s)	144, 159, 498, 611, 769
BspCNI	CTCAG	1 cut(s)	463
BspLI	GGNNCC	5 cut(s)	90, 159, 260, 261, 444
BspMI	ACCTGC	1 cut(s)	535
BspPI	GGATC	2 cut(s)	112, 356
BspT104I	TTCGAA	1 cut(s)	209
BspT107I	GGYRCC	1 cut(s)	442
BsrDI	GCAATG	2 cut(s)	684, 753
BsrI	ACTGG	2 cut(s)	499, 836
BssECI	CCNNGG	3 cut(s)	64, 290, 612
BssMI	GATC	5 cut(s)	117, 361, 523, 775, 1087
BssT1I	CCWWGG	2 cut(s)	290, 612
Bst4CI	ACNGT	2 cut(s)	347, 475
Bst6I	CTCTTC	1 cut(s)	51
BstBAI	YACGTR	1 cut(s)	1102
BstBI	TTCGAA	1 cut(s)	209
BstDEI	CTNAG	5 cut(s)	450, 572, 753, 815, 1093
BstDSI	CCRYGG	1 cut(s)	612
BstF5I	GGATG	2 cut(s)	517, 1109
BstKTI	GATC	5 cut(s)	120, 364, 526, 778, 1090
BstMAI	GTCTC	1 cut(s)	1023
BstMBI	GATC	5 cut(s)	117, 361, 523, 775, 1087
BstMWI	GCNNNNNNNGC	6 cut(s)	541, 577, 583, 668, 810, 819
BstSCI	CCNGG	4 cut(s)	63, 64, 201, 687
BstSLI	GKGCMC	1 cut(s)	161
BstSNI	TACGTA	1 cut(s)	1102
BstV1I	GCAGC	8 cut(s)	23, 142, 343, 589, 592, 595, 658, 715
BsuRI	GGCC	5 cut(s)	144, 159, 498, 611, 769
BtgI	CCRYGG	1 cut(s)	612
BtgZI	GCGATG	1 cut(s)	917
BtsCI	GGATG	2 cut(s)	517, 1109
BveI	ACCTGC	1 cut(s)	535
Cfr13I	GGNCC	5 cut(s)	89, 142, 157, 158, 259
Cfr9I	CCCGGG	1 cut(s)	64
Csp6I	GTAC	3 cut(s)	61, 295, 591
CviAII	CATG	1 cut(s)	613
CviQI	GTAC	3 cut(s)	61, 295, 591
DdeI	CTNAG	5 cut(s)	450, 572, 753, 815, 1093
DpnI	GATC	5 cut(s)	119, 363, 525, 777, 1089
DpnII	GATC	5 cut(s)	117, 361, 523, 775, 1087
EaeI	YGGCCR	1 cut(s)	496
Eam1104I	CTCTTC	1 cut(s)	51
EarI	CTCTTC	1 cut(s)	51
EciI	GGCGGA	2 cut(s)	114, 153
Eco105I	TACGTA	1 cut(s)	1102
Eco130I	CCWWGG	2 cut(s)	290, 612
Eco24I	GRGCYC	1 cut(s)	161
Eco47I	GGWCC	2 cut(s)	89, 259
Eco57I	CTGAAG	2 cut(s)	590, 1071
Eco88I	CYCGRG	1 cut(s)	64
EcoO109I	RGGNCCY	3 cut(s)	142, 158, 259
EcoT14I	CCWWGG	2 cut(s)	290, 612
EcoT38I	GRGCYC	1 cut(s)	161
ErhI	CCWWGG	2 cut(s)	290, 612
FaeI	CATG	1 cut(s)	616
FaiI	YATR	6 cut(s)	184, 191, 267, 614, 698, 876
FalI	AAGNNNNNCTT	2 cut(s)	1016, 1048
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	1 cut(s)	612
FauI	CCCGC	1 cut(s)	962
FbaI	TGATCA	1 cut(s)	775
FokI	GGATG	2 cut(s)	524, 1096
FriOI	GRGCYC	1 cut(s)	161
FspBI	CTAG	6 cut(s)	291, 563, 594, 786, 890, 962
HaeIII	GGCC	5 cut(s)	144, 159, 498, 611, 769
HapII	CCGG	4 cut(s)	65, 203, 461, 689
Hin1II	CATG	1 cut(s)	616
HindIII	AAGCTT	2 cut(s)	319, 569
HinfI	GANTC	3 cut(s)	79, 211, 806
HpaII	CCGG	4 cut(s)	65, 203, 461, 689
HphI	GGTGA	2 cut(s)	121, 940
Hpy166II	GTNNAC	1 cut(s)	196
Hpy188I	TCNGA	4 cut(s)	174, 408, 886, 1044
Hpy188III	TCNNGA	3 cut(s)	92, 365, 854
Hpy8I	GTNNAC	1 cut(s)	196
HpyAV	CCTTC	6 cut(s)	230, 383, 456, 614, 724, 983
HpyCH4III	ACNGT	2 cut(s)	347, 475
HpyCH4IV	ACGT	1 cut(s)	1101
HpyCH4V	TGCA	3 cut(s)	31, 682, 913
HpyF10VI	GCNNNNNNNGC	6 cut(s)	541, 577, 583, 668, 810, 819
HpyF3I	CTNAG	5 cut(s)	450, 572, 753, 815, 1093
HpySE526I	ACGT	1 cut(s)	1101
Hsp92II	CATG	1 cut(s)	616
KflI	GGGWCCC	1 cut(s)	259
Ksp22I	TGATCA	1 cut(s)	775
Kzo9I	GATC	5 cut(s)	117, 361, 523, 775, 1087
LmnI	GCTCC	4 cut(s)	228, 243, 733, 886
Lsp1109I	GCAGC	8 cut(s)	23, 142, 343, 589, 592, 595, 658, 715
LweI	GCATC	1 cut(s)	421
MaeI	CTAG	6 cut(s)	291, 563, 594, 786, 890, 962
MaeII	ACGT	1 cut(s)	1101
MaeIII	GTNAC	3 cut(s)	536, 624, 1097
MalI	GATC	5 cut(s)	119, 363, 525, 777, 1089
MboI	GATC	5 cut(s)	117, 361, 523, 775, 1087
MboII	GAAGA	6 cut(s)	68, 433, 447, 1013, 1073, 1079
MfeI	CAATTG	1 cut(s)	771
MhlI	GDGCHC	1 cut(s)	161
MlsI	TGGCCA	1 cut(s)	498
MluCI	AATT	3 cut(s)	310, 771, 857
MluNI	TGGCCA	1 cut(s)	498
MlyI	GAGTC	1 cut(s)	73
MmeI	TCCRAC	2 cut(s)	736, 864
Mox20I	TGGCCA	1 cut(s)	498
MscI	TGGCCA	1 cut(s)	498
MseI	TTAA	3 cut(s)	429, 840, 1023
MslI	CAYNNNNRTG	1 cut(s)	485
Msp20I	TGGCCA	1 cut(s)	498
MspA1I	CMGCKG	1 cut(s)	649
MspI	CCGG	4 cut(s)	65, 203, 461, 689
MspR9I	CCNGG	4 cut(s)	65, 66, 203, 689
MunI	CAATTG	1 cut(s)	771
MwoI	GCNNNNNNNGC	6 cut(s)	541, 577, 583, 668, 810, 819
NciI	CCSGG	4 cut(s)	65, 66, 203, 689
NcoI	CCATGG	1 cut(s)	612
NdeII	GATC	5 cut(s)	117, 361, 523, 775, 1087
NlaIII	CATG	1 cut(s)	616
NlaIV	GGNNCC	5 cut(s)	90, 159, 260, 261, 444
NmuCI	GTSAC	1 cut(s)	536
NspV	TTCGAA	1 cut(s)	209
OliI	CACNNNNGTG	1 cut(s)	485
PcsI	WCGNNNNNNNCGW	1 cut(s)	532
PfeI	GAWTC	2 cut(s)	211, 806
PleI	GAGTC	1 cut(s)	73
PpsI	GAGTC	1 cut(s)	73
Ppu21I	YACGTR	1 cut(s)	1102
PpuMI	RGGWCCY	1 cut(s)	259
Psp5II	RGGWCCY	1 cut(s)	259
PspN4I	GGNNCC	5 cut(s)	90, 159, 260, 261, 444
PspOMI	GGGCCC	1 cut(s)	157
PspPI	GGNCC	5 cut(s)	89, 142, 157, 158, 259
PspPPI	RGGWCCY	1 cut(s)	259
PsrI	GAACNNNNNNTAC	4 cut(s)	167, 199, 609, 641
RsaI	GTAC	3 cut(s)	62, 296, 592
RsaNI	GTAC	3 cut(s)	61, 295, 591
RseI	CAYNNNNRTG	1 cut(s)	485
SaqAI	TTAA	3 cut(s)	429, 840, 1023
Sau3AI	GATC	5 cut(s)	117, 361, 523, 775, 1087
Sau96I	GGNCC	5 cut(s)	89, 142, 157, 158, 259
ScaI	AGTACT	1 cut(s)	592
SchI	GAGTC	1 cut(s)	73
ScrFI	CCNGG	4 cut(s)	65, 66, 203, 689
SduI	GDGCHC	1 cut(s)	161
SfaNI	GCATC	1 cut(s)	421
SfuI	TTCGAA	1 cut(s)	209
SinI	GGWCC	2 cut(s)	89, 259
SmaI	CCCGGG	1 cut(s)	66
SmiMI	CAYNNNNRTG	1 cut(s)	485
SmlI	CTYRAG	1 cut(s)	316
SmoI	CTYRAG	1 cut(s)	316
SnaBI	TACGTA	1 cut(s)	1102
SpeI	ACTAGT	2 cut(s)	562, 785
Sse9I	AATT	3 cut(s)	310, 771, 857
SsiI	CCGC	7 cut(s)	9, 125, 128, 164, 532, 649, 969
SspMI	CTAG	6 cut(s)	291, 563, 594, 786, 890, 962
StyD4I	CCNGG	4 cut(s)	63, 64, 201, 687
StyI	CCWWGG	2 cut(s)	290, 612
TaaI	ACNGT	2 cut(s)	347, 475
TaiI	ACGT	1 cut(s)	1104
TaqI	TCGA	4 cut(s)	71, 77, 99, 209
TaqII	GACCGA	1 cut(s)	384
TasI	AATT	3 cut(s)	310, 771, 857
TatI	WGTACW	1 cut(s)	590
TauI	GCSGC	3 cut(s)	130, 535, 652
TfiI	GAWTC	2 cut(s)	211, 806
Tru1I	TTAA	3 cut(s)	429, 840, 1023
Tru9I	TTAA	3 cut(s)	429, 840, 1023
TseFI	GTSAC	1 cut(s)	536
TseI	GCWGC	8 cut(s)	11, 130, 331, 577, 580, 583, 646, 703
Tsp45I	GTSAC	1 cut(s)	536
TspDTI	ATGAA	6 cut(s)	402, 656, 891, 1002, 1080, 1098
TspMI	CCCGGG	1 cut(s)	64
VpaK11BI	GGWCC	2 cut(s)	89, 259
XapI	RAATTY	1 cut(s)	857
XmaI	CCCGGG	1 cut(s)	64
XmaJI	CCTAGG	1 cut(s)	290
XspI	CTAG	6 cut(s)	291, 563, 594, 786, 890, 962
ZrmI	AGTACT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.