Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0010496

Physical Location & Seq

Genomic Coordinates Reverse (-)

27813461 .. 27815809

Gene Structure 2349 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2349 bp

ATGAAGAAATTCAGCTATCGGACAACTTCAGTTTGCCCATCTGTTCTTTATCTTCTACTTGCTAATGCTAGTTGTATTGTAGCTCGGATATCGGAATCTCATCTTCGAGCTTATTCGAGTGCCAGGTCAGTTTGTGGGTTTCTCGGCTCTTCTTCTTTGGCCAAGTCAAAAGTCCGAGATGATAAACTTACACCTAAAGGAAGCTTCTTTTCTACTATGGCGGGAACAATCTTGGTCCAGGCTCGAGACCCGGCTAAGTTAACTTTGGAGATACAGAATGCAATTGATGAGCACAGACTAAGTGATGCTTGGAAGTTGCATGAGCGGCATATGCAGATGGAAGGGTTTCCTAGGAAATCCGTTATGAATGAGCTCGTAACGAGTTTCGTGGAAAGCTTTGATGTTCAGTGGCTGGAGAAGGCGTACGGGCTGGTAGAACATGCTATTGAGAAAAGTAAACTGAATTTGTTAGAGAAGGAAACGCTGATTTATCTGTCTTTTGGGCTTGCCAAAGCCGGATTACCTAATCCTGCGTCGACTGTTTTGAGAAAGATGGTAGAGATGGAACAGTTTCCCCCTGTTGCTGCCTGGTCTGCAATCTTGGCTTACATGTCTCGAACAGCTCAAGGGGCTTACCTTGCTGCAGAGTTGATTCTCGAGATAGGTTACCTATTCCAAGATAACAGGATCGATCCGCGTAAGAAGTGTAATGCACCTTTGATTGCTATGAAGCCTAATACTACTGCTTTCAATGTCGCTTTGGCTGGCTGTCTCATATTTGGGACAACTAGGAAAGCCGAGCAGATCCTTGACATGATGCCTCGAGTTGGTGTCAAAATGGACGCTAACTTGTTGATATTAATGGCACAAGTATATGAGAGAAATGGACGAAGAGATGAGCTTACGAAACTTCAACGATACATAGATGAAGCCCACAACCTTACCGATATCCAGTATCGGCAATTCTACAACTGCTTGTTGACTTGCCATTTGAAATTCGGGGATCTAGATTCTGCATCCAACATGGTCTTGGAAATGCTAAGGAAGGCAAAAGCAGCACGAAGTTCTCTTGCAGTAGCAACACTGGTATTTGATGCTGCTGGAAAGGGCAACAAGTCTCTTGGACCGGGATCTCTGTCCGGTAAAAGTTCAAGCTATGTAGAATCAAATGGTTATGAAGATAATGGTTTAAGTAGCCCGTTAGTATCTTATGATGAGTTTTCTAGGGACAGAAATTTCTTGAGACTTGAGACTGATGCAAAGGAAGTACTTGGTGCAGTGTTAGCTAAGTTGCAGAGCCAAGTCAAATTGGTAACAACTGACCGCGGTATCCTCCAGCCAACTGAAAAACTTTTCGTGACATTAGTCAAGGCGTTTCTGGAAGCAGACAAGACCAAGGATTTGGCAGAGTTTCTAATAAAGGCCGACAAAGAAGATTCCCCAGCATCCAACGACAATTCAGCCTTGGTTCATGTAATTAATTCGTGCATATCACTTGGATGGTTAGACAAGGCGCATGACCTTCTCGATGAGATGTTTTTGGCTGGTGTAAGAACCGGTTCAGCTGTATATTCTTCTCTTTTAAAAGCATATTGTCAAGCAAAGCAAGCGGGAAATGTGGCATCACTTTTAAGAGATGCTCGTAAAGCCGGGATCCAGCTAGACTCAAGCTCTTATGAGGCATTGATCCAATCGAGGGTTCTTCAAAATGATACACAGGGAGCCCTCCATTTGTACAGAGAGATGAAGGAGGCTAAGATACCAAAAGCTGGCCATCAGGAGTTCGAGAGGTTAGTACATGAATGTGCAGGGGACGGTGAACCTAAGTTGATGGTAAAGCTCTTGCAGGAAATCAAGGAAGGGCAGAAATCCGATGCCGGGGTTCACGACTGGAACAACGTAATCCATTTCTTCTGCAAGAAGAGACTCATGCAAGACGCTGAGAAGGCGCTGACGAAGATGAGAAGCCTCGGGTACACCCCAAATGCACAAACATTCCATTCTATGGTAACTGGTTATGCTGCTGTAGGAGGAAAGTATACAGAAGTGACCGAGTTGTGGGGTGAGATGAAGTCCATTGCTGCTGCCACCTCAATGAAATTCGACCAGGAGCTCCTGGATTCGGTTCTTTACACCTTCGTGAGGGGCGGATTTTTCAGCCGAGCAAATGAAGTTGTGGAGATGATGGAGAAAGGGAAGATGTTTGTCGACAAATACAAGTACCGGACGCTTTTCTTGAAGTACCATAGAACAAGTTACAAAGGCAAGGCTCCCAAATTCCAGACAGAATCCCAACATAAAAAGAGGGAGGCTGCATTGGCGTTTAAGAATTGGGTTGGAGTTTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

783

Amino Acids

87.36

Weight (kDa)

8.98

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_At1g68980	PF25245	83 - 212	7e-12	At1g68980, TPR repeats
PPR_2	PF13041	631 - 674	1.8e-08	PPR repeat family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010496)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03100
fragaria_vesca	FvH4_5g32870
malus_domestica	MD11G1281500.v1.1
prunus_persica	Prupe.8G237400_v2.0.a1
pyrus_communis	pycom11g24960
rosa_chinensis	RchiOBHm_Chr7g0230741 RchiOBHm_Chr7g0230851
rosa_laevigata	RLG00000001478
rosa_multiflora	Rmu_sc0007883.1_g000006 Rmu_sc0010407.1_g000003
rosa_roxburghii	Rroxscaffold_3G00229770
rosa_rugosa	Rorug07G0262500
rosa_samantha	Rh7AG414200 Rh7AG414900 Rh7BG391400 Rh7CG433100 Rh7CG433600 Rh7DG409800
rosa_wichuraiana	Rw7G034240 Rw7G034270 Rw7G034390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	1769, 2005
AccBSI	CCGCTC	1 cut(s)	325
AccI	GTMKAC	3 cut(s)	536, 2039, 2208
AccII	CGCG	2 cut(s)	697, 1326
AciI	CCGC	7 cut(s)	221, 325, 695, 1324, 1326, 1610, 2148
AclWI	GGATC	8 cut(s)	686, 695, 799, 1011, 1138, 1648, 1661, 1681
AcoI	YGGCCR	2 cut(s)	159, 1771
AcsI	RAATTY	6 cut(s)	8, 463, 995, 1234, 2099, 2276
AcuI	CTGAAG	1 cut(s)	12
AfaI	GTAC	7 cut(s)	425, 1269, 1736, 1797, 1976, 2222, 2243
AfiI	CCNNNNNNNGG	8 cut(s)	827, 1696, 1769, 1878, 2005, 2058, 2122, 2142
AflIII	ACRYGT	1 cut(s)	609
AgeI	ACCGGT	1 cut(s)	1556
AgsI	TTSAA	6 cut(s)	751, 914, 994, 1152, 1706, 2239
AjnI	CCWGG	5 cut(s)	122, 237, 587, 2106, 2115
AjuI	GAANNNNNNNTTGG	2 cut(s)	1683, 1715
AleI	CACNNNNGTG	1 cut(s)	2138
Alw21I	GWGCWC	3 cut(s)	294, 375, 2115
Alw26I	GTCTC	7 cut(s)	240, 618, 776, 1122, 1237, 1244, 1918
AlwI	GGATC	8 cut(s)	686, 695, 799, 1011, 1138, 1648, 1661, 1681
AlwNI	CAGNNNCTG	1 cut(s)	412
Ama87I	CYCGRG	4 cut(s)	243, 656, 822, 1970
AoxI	GGCC	3 cut(s)	159, 1422, 1771
ApeKI	GCWGC	8 cut(s)	584, 641, 1055, 1097, 2021, 2081, 2084, 2312
ApoI	RAATTY	6 cut(s)	8, 463, 995, 1234, 2099, 2276
ArsI	GACNNNNNNTTYG	4 cut(s)	973, 1005, 1384, 1416
AseI	ATTAAT	2 cut(s)	860, 1479
AsiGI	ACCGGT	1 cut(s)	1556
Asp700I	GAANNNNTTC	4 cut(s)	8, 345, 570, 1558
AspA2I	CCTAGG	1 cut(s)	350
AspLEI	GCGC	2 cut(s)	1516, 1951
AspS9I	GGNCC	2 cut(s)	235, 1124
AsuC2I	CCSGG	4 cut(s)	251, 1128, 1651, 1879
AsuHPI	GGTGA	2 cut(s)	1829, 2075
AvaI	CYCGRG	4 cut(s)	243, 656, 822, 1970
AvaII	GGWCC	2 cut(s)	235, 1124
AvrII	CCTAGG	1 cut(s)	350
BaeI	ACNNNNGTAYC	2 cut(s)	1312, 1345
BalI	TGGCCA	2 cut(s)	161, 1773
BamHI	GGATCC	1 cut(s)	1653
BanII	GRGCYC	3 cut(s)	375, 1726, 2115
Bbv12I	GWGCWC	3 cut(s)	294, 375, 2115
BbvI	GCAGC	8 cut(s)	571, 628, 1067, 1084, 2008, 2068, 2071, 2299
BccI	CCATC	8 cut(s)	46, 331, 547, 556, 1494, 1782, 1825, 2179
BciT130I	CCWGG	5 cut(s)	124, 239, 589, 2108, 2117
BciVI	GTATCC	1 cut(s)	1340
BcnI	CCSGG	4 cut(s)	251, 1128, 1651, 1879
BcoDI	GTCTC	7 cut(s)	240, 618, 776, 1122, 1237, 1244, 1918
BfaI	CTAG	6 cut(s)	69, 351, 789, 1007, 1224, 1661
BfmI	CTRYAG	2 cut(s)	642, 2025
BfoI	RGCGCY	1 cut(s)	1952
BfuI	GTATCC	1 cut(s)	1340
BisI	GCNGC	9 cut(s)	326, 585, 642, 1056, 1098, 2022, 2082, 2085, 2313
BlnI	CCTAGG	1 cut(s)	350
BlsI	GCNGC	9 cut(s)	327, 586, 643, 1057, 1099, 2023, 2083, 2086, 2314
BmcAI	AGTACT	1 cut(s)	1269
Bme1390I	CCNGG	9 cut(s)	124, 239, 251, 589, 1128, 1651, 1879, 2108, 2117
Bme18I	GGWCC	2 cut(s)	235, 1124
BmeT110I	CYCGRG	4 cut(s)	243, 656, 822, 1970
BmgT120I	GGNCC	2 cut(s)	235, 1124
BmiI	GGNNCC	3 cut(s)	1655, 1723, 2271
BmrFI	CCNGG	9 cut(s)	124, 239, 251, 589, 1128, 1651, 1879, 2108, 2117
BmsI	GCATC	9 cut(s)	295, 807, 1025, 1084, 1246, 1454, 1627, 1631, 1864
BoxI	GACNNNNGTC	1 cut(s)	1364
BpmI	CTGGAG	2 cut(s)	434, 1319
Bpu10I	CCTNAGC	1 cut(s)	1040
BpuEI	CTTGAG	4 cut(s)	609, 1261, 1268, 1651
BpuMI	CCSGG	4 cut(s)	251, 1128, 1651, 1879
Bsa29I	ATCGAT	1 cut(s)	690
BsaI	GGTCTC	1 cut(s)	240
BsaJI	CCNNGG	6 cut(s)	350, 1324, 1395, 1464, 1878, 1969
BsaWI	WCCGGW	3 cut(s)	1139, 1556, 2223
BsaXI	ACNNNNNCTCC	2 cut(s)	407, 437
Bsc4I	CCNNNNNNNGG	8 cut(s)	827, 1696, 1769, 1878, 2005, 2058, 2122, 2142
Bse118I	RCCGGY	1 cut(s)	1556
Bse1I	ACTGG	4 cut(s)	952, 1089, 1895, 2017
Bse3DI	GCAATG	1 cut(s)	2076
BseBI	CCWGG	5 cut(s)	124, 239, 589, 2108, 2117
BseCI	ATCGAT	1 cut(s)	690
BseDI	CCNNGG	6 cut(s)	350, 1324, 1395, 1464, 1878, 1969
BseGI	GGATG	3 cut(s)	1016, 1445, 1505
BseLI	CCNNNNNNNGG	8 cut(s)	827, 1696, 1769, 1878, 2005, 2058, 2122, 2142
BseMI	GCAATG	1 cut(s)	2076
BseMII	CTCAG	1 cut(s)	1932
BseNI	ACTGG	4 cut(s)	952, 1089, 1895, 2017
BseXI	GCAGC	8 cut(s)	571, 628, 1067, 1084, 2008, 2068, 2071, 2299
BseYI	CCCAGC	1 cut(s)	1441
BsgI	GTGCAG	2 cut(s)	1296, 1827
Bsh1236I	CGCG	2 cut(s)	697, 1326
BshFI	GGCC	3 cut(s)	161, 1424, 1773
BshTI	ACCGGT	1 cut(s)	1556
BshVI	ATCGAT	1 cut(s)	690
BsiHKAI	GWGCWC	3 cut(s)	294, 375, 2115
BsiHKCI	CYCGRG	4 cut(s)	243, 656, 822, 1970
BsiSI	CCGG	8 cut(s)	251, 516, 1127, 1140, 1557, 1650, 1878, 2224
BsiWI	CGTACG	1 cut(s)	423
BslFI	GGGAC	3 cut(s)	796, 1241, 1826
BslI	CCNNNNNNNGG	8 cut(s)	827, 1696, 1769, 1878, 2005, 2058, 2122, 2142
BsmAI	GTCTC	7 cut(s)	240, 618, 776, 1122, 1237, 1244, 1918
BsmFI	GGGAC	3 cut(s)	796, 1241, 1826
BsmI	GAATGC	1 cut(s)	283
BsnI	GGCC	3 cut(s)	161, 1424, 1773
Bso31I	GGTCTC	1 cut(s)	240
BsoBI	CYCGRG	4 cut(s)	243, 656, 822, 1970
Bsp1286I	GDGCHC	4 cut(s)	294, 375, 1726, 2115
Bsp1407I	TGTACA	1 cut(s)	1734
Bsp143I	GATC	7 cut(s)	687, 691, 804, 1003, 1130, 1653, 1686
BspACI	CCGC	7 cut(s)	221, 325, 695, 1324, 1326, 1610, 2148
BspANI	GGCC	3 cut(s)	161, 1424, 1773
BspCNI	CTCAG	1 cut(s)	1933
BspDI	ATCGAT	1 cut(s)	690
BspFNI	CGCG	2 cut(s)	697, 1326
BspLI	GGNNCC	3 cut(s)	1655, 1723, 2271
BspMAI	CTGCAG	1 cut(s)	646
BspPI	GGATC	8 cut(s)	686, 695, 799, 1011, 1138, 1648, 1661, 1681
BspQI	GCTCTTC	1 cut(s)	154
BspTNI	GGTCTC	1 cut(s)	240
BsrBI	CCGCTC	1 cut(s)	325
BsrDI	GCAATG	1 cut(s)	2076
BsrFI	RCCGGY	1 cut(s)	1556
BsrGI	TGTACA	1 cut(s)	1734
BsrI	ACTGG	4 cut(s)	952, 1089, 1895, 2017
BssAI	RCCGGY	1 cut(s)	1556
BssECI	CCNNGG	6 cut(s)	350, 1324, 1395, 1464, 1878, 1969
BssMI	GATC	7 cut(s)	687, 691, 804, 1003, 1130, 1653, 1686
BssNAI	GTATAC	1 cut(s)	2040
BssT1I	CCWWGG	3 cut(s)	350, 1395, 1464
Bst1107I	GTATAC	1 cut(s)	2040
Bst2UI	CCWGG	5 cut(s)	124, 239, 589, 2108, 2117
Bst4CI	ACNGT	3 cut(s)	541, 570, 1817
Bst6I	CTCTTC	3 cut(s)	154, 886, 1916
BstAUI	TGTACA	1 cut(s)	1734
BstC8I	GCNNGC	4 cut(s)	507, 766, 1608, 1771
BstDEI	CTNAG	7 cut(s)	255, 299, 1040, 1287, 1755, 1824, 1941
BstDSI	CCRYGG	1 cut(s)	1324
BstEII	GGTNACC	1 cut(s)	665
BstENI	CCTNNNNNAGG	1 cut(s)	2140
BstF5I	GGATG	3 cut(s)	1016, 1445, 1505
BstFNI	CGCG	2 cut(s)	697, 1326
BstH2I	RGCGCY	1 cut(s)	1952
BstHHI	GCGC	2 cut(s)	1516, 1951
BstKTI	GATC	7 cut(s)	690, 694, 807, 1006, 1133, 1656, 1689
BstMAI	GTCTC	7 cut(s)	240, 618, 776, 1122, 1237, 1244, 1918
BstMBI	GATC	7 cut(s)	687, 691, 804, 1003, 1130, 1653, 1686
BstNI	CCWGG	5 cut(s)	124, 239, 589, 2108, 2117
BstNSI	RCATGY	2 cut(s)	443, 613
BstPAI	GACNNNNGTC	1 cut(s)	1364
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	9 cut(s)	122, 237, 249, 587, 1126, 1649, 1877, 2106, 2115
BstSFI	CTRYAG	2 cut(s)	642, 2025
BstUI	CGCG	2 cut(s)	697, 1326
BstV1I	GCAGC	8 cut(s)	571, 628, 1067, 1084, 2008, 2068, 2071, 2299
BstX2I	RGATCY	4 cut(s)	804, 1003, 1130, 1653
BstXI	CCANNNNNNTGG	1 cut(s)	1402
BstYI	RGATCY	4 cut(s)	804, 1003, 1130, 1653
BstZ17I	GTATAC	1 cut(s)	2040
Bsu15I	ATCGAT	1 cut(s)	690
BsuI	GTATCC	1 cut(s)	1340
BsuRI	GGCC	3 cut(s)	161, 1424, 1773
BsuTUI	ATCGAT	1 cut(s)	690
BtgI	CCRYGG	1 cut(s)	1324
BtsCI	GGATG	3 cut(s)	1016, 1445, 1505
BtsI	GCAGTG	1 cut(s)	1284
BtsIMutI	CAGTG	3 cut(s)	413, 1082, 1284
Cac8I	GCNNGC	4 cut(s)	507, 766, 1608, 1771
CaiI	CAGNNNCTG	1 cut(s)	412
CfoI	GCGC	2 cut(s)	1516, 1951
Cfr10I	RCCGGY	1 cut(s)	1556
Cfr13I	GGNCC	2 cut(s)	235, 1124
Cfr42I	CCGCGG	1 cut(s)	1327
ClaI	ATCGAT	1 cut(s)	690
CseI	GACGC	4 cut(s)	522, 851, 1946, 2236
Csp6I	GTAC	7 cut(s)	424, 1268, 1735, 1796, 1975, 2221, 2242
CspAI	ACCGGT	1 cut(s)	1556
CviAII	CATG	9 cut(s)	320, 440, 610, 814, 1024, 1472, 1517, 1799, 1930
CviQI	GTAC	7 cut(s)	424, 1268, 1735, 1796, 1975, 2221, 2242
DdeI	CTNAG	7 cut(s)	255, 299, 1040, 1287, 1755, 1824, 1941
DpnI	GATC	7 cut(s)	689, 693, 806, 1005, 1132, 1655, 1688
DpnII	GATC	7 cut(s)	687, 691, 804, 1003, 1130, 1653, 1686
DraI	TTTAAA	1 cut(s)	1584
EaeI	YGGCCR	2 cut(s)	159, 1771
Eam1104I	CTCTTC	3 cut(s)	154, 886, 1916
EarI	CTCTTC	3 cut(s)	154, 886, 1916
EciI	GGCGGA	1 cut(s)	2163
Ecl136II	GAGCTC	2 cut(s)	373, 2113
Eco130I	CCWWGG	3 cut(s)	350, 1395, 1464
Eco24I	GRGCYC	3 cut(s)	375, 1726, 2115
Eco31I	GGTCTC	1 cut(s)	240
Eco32I	GATATC	2 cut(s)	90, 949
Eco47I	GGWCC	2 cut(s)	235, 1124
Eco53kI	GAGCTC	2 cut(s)	373, 2113
Eco57I	CTGAAG	1 cut(s)	12
Eco88I	CYCGRG	4 cut(s)	243, 656, 822, 1970
Eco91I	GGTNACC	1 cut(s)	665
EcoICRI	GAGCTC	2 cut(s)	373, 2113
EcoNI	CCTNNNNNAGG	1 cut(s)	2140
EcoO65I	GGTNACC	1 cut(s)	665
EcoRII	CCWGG	5 cut(s)	122, 237, 587, 2106, 2115
EcoRV	GATATC	2 cut(s)	90, 949
EcoT14I	CCWWGG	3 cut(s)	350, 1395, 1464
EcoT38I	GRGCYC	3 cut(s)	375, 1726, 2115
ErhI	CCWWGG	3 cut(s)	350, 1395, 1464
FaeI	CATG	9 cut(s)	323, 443, 613, 817, 1027, 1475, 1520, 1802, 1933
FalI	AAGNNNNNCTT	2 cut(s)	292, 324
FaqI	GGGAC	3 cut(s)	796, 1241, 1826
FatI	CATG	9 cut(s)	319, 439, 609, 813, 1023, 1471, 1516, 1798, 1929
FauI	CCCGC	2 cut(s)	214, 1603
FauNDI	CATATG	1 cut(s)	330
FblI	GTMKAC	3 cut(s)	536, 2039, 2208
Fnu4HI	GCNGC	9 cut(s)	326, 585, 642, 1056, 1098, 2022, 2082, 2085, 2313
FokI	GGATG	3 cut(s)	1003, 1432, 1512
FriOI	GRGCYC	3 cut(s)	375, 1726, 2115
Fsp4HI	GCNGC	9 cut(s)	326, 585, 642, 1056, 1098, 2022, 2082, 2085, 2313
FspBI	CTAG	6 cut(s)	69, 351, 789, 1007, 1224, 1661
GlaI	GCGC	2 cut(s)	1515, 1950
GluI	GCNGC	9 cut(s)	326, 585, 642, 1056, 1098, 2022, 2082, 2085, 2313
GsaI	CCCAGC	1 cut(s)	1445
GsuI	CTGGAG	2 cut(s)	434, 1319
HaeII	RGCGCY	1 cut(s)	1952
HaeIII	GGCC	3 cut(s)	161, 1424, 1773
HapII	CCGG	8 cut(s)	251, 516, 1127, 1140, 1557, 1650, 1878, 2224
HgaI	GACGC	4 cut(s)	522, 851, 1946, 2236
HhaI	GCGC	2 cut(s)	1516, 1951
Hin1II	CATG	9 cut(s)	323, 443, 613, 817, 1027, 1475, 1520, 1802, 1933
Hin6I	GCGC	2 cut(s)	1514, 1949
HinP1I	GCGC	2 cut(s)	1514, 1949
HincII	GTYRAC	4 cut(s)	261, 537, 981, 2209
HindII	GTYRAC	4 cut(s)	261, 537, 981, 2209
HindIII	AAGCTT	2 cut(s)	202, 394
HinfI	GANTC	9 cut(s)	95, 652, 1010, 1163, 1436, 1664, 1926, 2120, 2288
HpaI	GTTAAC	1 cut(s)	261
HpaII	CCGG	8 cut(s)	251, 516, 1127, 1140, 1557, 1650, 1878, 2224
HphI	GGTGA	2 cut(s)	1829, 2075
Hpy166II	GTNNAC	9 cut(s)	261, 458, 537, 981, 1820, 1885, 1977, 2040, 2209
Hpy188I	TCNGA	5 cut(s)	21, 87, 94, 176, 1873
Hpy8I	GTNNAC	9 cut(s)	261, 458, 537, 981, 1820, 1885, 1977, 2040, 2209
Hpy99I	CGWCG	1 cut(s)	538
HpyAV	CCTTC	9 cut(s)	335, 412, 469, 1039, 1532, 1741, 1853, 1939, 2146
HpyCH4III	ACNGT	3 cut(s)	541, 570, 1817
HpyCH4IV	ACGT	1 cut(s)	1899
HpyF3I	CTNAG	7 cut(s)	255, 299, 1040, 1287, 1755, 1824, 1941
HpySE526I	ACGT	1 cut(s)	1899
Hsp92II	CATG	9 cut(s)	323, 443, 613, 817, 1027, 1475, 1520, 1802, 1933
HspAI	GCGC	2 cut(s)	1514, 1949
KspAI	GTTAAC	1 cut(s)	261
KspI	CCGCGG	1 cut(s)	1327
Kzo9I	GATC	7 cut(s)	687, 691, 804, 1003, 1130, 1653, 1686
LguI	GCTCTTC	1 cut(s)	154
LmnI	GCTCC	4 cut(s)	1721, 2110, 2118, 2275
Lsp1109I	GCAGC	8 cut(s)	571, 628, 1067, 1084, 2008, 2068, 2071, 2299
LweI	GCATC	9 cut(s)	295, 807, 1025, 1084, 1246, 1454, 1627, 1631, 1864
MaeI	CTAG	6 cut(s)	69, 351, 789, 1007, 1224, 1661
MaeII	ACGT	1 cut(s)	1899
MaeIII	GTNAC	7 cut(s)	376, 665, 1312, 1357, 2008, 2047, 2255
MalI	GATC	7 cut(s)	689, 693, 806, 1005, 1132, 1655, 1688
MbiI	CCGCTC	1 cut(s)	325
MboI	GATC	7 cut(s)	687, 691, 804, 1003, 1130, 1653, 1686
MfeI	CAATTG	1 cut(s)	282
MflI	RGATCY	4 cut(s)	804, 1003, 1130, 1653
MhlI	GDGCHC	4 cut(s)	294, 375, 1726, 2115
MlsI	TGGCCA	2 cut(s)	161, 1773
MluNI	TGGCCA	2 cut(s)	161, 1773
MlyI	GAGTC	2 cut(s)	1658, 1920
MmeI	TCCRAC	3 cut(s)	1044, 1473, 2317
Mox20I	TGGCCA	2 cut(s)	161, 1773
MroXI	GAANNNNTTC	4 cut(s)	8, 345, 570, 1558
MscI	TGGCCA	2 cut(s)	161, 1773
MseI	TTAA	7 cut(s)	260, 860, 1190, 1479, 1583, 1631, 2325
MslI	CAYNNNNRTG	4 cut(s)	1498, 1803, 2093, 2138
Msp20I	TGGCCA	2 cut(s)	161, 1773
MspA1I	CMGCKG	2 cut(s)	1326, 1565
MspI	CCGG	8 cut(s)	251, 516, 1127, 1140, 1557, 1650, 1878, 2224
MspR9I	CCNGG	9 cut(s)	124, 239, 251, 589, 1128, 1651, 1879, 2108, 2117
MunI	CAATTG	1 cut(s)	282
Mva1269I	GAATGC	1 cut(s)	283
MvaI	CCWGG	5 cut(s)	124, 239, 589, 2108, 2117
MvnI	CGCG	2 cut(s)	697, 1326
NciI	CCSGG	4 cut(s)	251, 1128, 1651, 1879
NdeI	CATATG	1 cut(s)	330
NdeII	GATC	7 cut(s)	687, 691, 804, 1003, 1130, 1653, 1686
NlaIII	CATG	9 cut(s)	323, 443, 613, 817, 1027, 1475, 1520, 1802, 1933
NlaIV	GGNNCC	3 cut(s)	1655, 1723, 2271
NmeAIII	GCCGAG	3 cut(s)	123, 823, 2186
NmuCI	GTSAC	2 cut(s)	1357, 2047
NspI	RCATGY	2 cut(s)	443, 613
OliI	CACNNNNGTG	1 cut(s)	2138
PaeR7I	CTCGAG	3 cut(s)	243, 656, 822
PciI	ACATGT	1 cut(s)	609
PciSI	GCTCTTC	1 cut(s)	154
PctI	GAATGC	1 cut(s)	283
PdmI	GAANNNNTTC	4 cut(s)	8, 345, 570, 1558
PfeI	GAWTC	7 cut(s)	95, 652, 1010, 1163, 1436, 2120, 2288
Pfl23II	CGTACG	1 cut(s)	423
PflMI	CCANNNNNTGG	2 cut(s)	1769, 2005
PfoI	TCCNGGA	1 cut(s)	2115
PinAI	ACCGGT	1 cut(s)	1556
PkrI	GCNGC	9 cut(s)	327, 586, 643, 1057, 1099, 2023, 2083, 2086, 2314
PleI	GAGTC	2 cut(s)	1658, 1920
PpsI	GAGTC	2 cut(s)	1658, 1920
PscI	ACATGT	1 cut(s)	609
PshAI	GACNNNNGTC	1 cut(s)	1364
PshBI	ATTAAT	2 cut(s)	860, 1479
Psp124BI	GAGCTC	2 cut(s)	375, 2115
Psp6I	CCWGG	5 cut(s)	122, 237, 587, 2106, 2115
PspEI	GGTNACC	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	1441
PspGI	CCWGG	5 cut(s)	122, 237, 587, 2106, 2115
PspLI	CGTACG	1 cut(s)	423
PspN4I	GGNNCC	3 cut(s)	1655, 1723, 2271
PspPI	GGNCC	2 cut(s)	235, 1124
PspXI	VCTCGAGB	1 cut(s)	822
PstI	CTGCAG	1 cut(s)	646
PstNI	CAGNNNCTG	1 cut(s)	412
PsuI	RGATCY	4 cut(s)	804, 1003, 1130, 1653
PvuII	CAGCTG	1 cut(s)	1565
RsaI	GTAC	7 cut(s)	425, 1269, 1736, 1797, 1976, 2222, 2243
RsaNI	GTAC	7 cut(s)	424, 1268, 1735, 1796, 1975, 2221, 2242
RseI	CAYNNNNRTG	4 cut(s)	1498, 1803, 2093, 2138
SacI	GAGCTC	2 cut(s)	375, 2115
SacII	CCGCGG	1 cut(s)	1327
SalI	GTCGAC	2 cut(s)	535, 2207
SapI	GCTCTTC	1 cut(s)	154
SaqAI	TTAA	7 cut(s)	260, 860, 1190, 1479, 1583, 1631, 2325
SatI	GCNGC	9 cut(s)	326, 585, 642, 1056, 1098, 2022, 2082, 2085, 2313
Sau3AI	GATC	7 cut(s)	687, 691, 804, 1003, 1130, 1653, 1686
Sau96I	GGNCC	2 cut(s)	235, 1124
ScaI	AGTACT	1 cut(s)	1269
SchI	GAGTC	2 cut(s)	1658, 1920
ScrFI	CCNGG	9 cut(s)	124, 239, 251, 589, 1128, 1651, 1879, 2108, 2117
SduI	GDGCHC	4 cut(s)	294, 375, 1726, 2115
SfaNI	GCATC	9 cut(s)	295, 807, 1025, 1084, 1246, 1454, 1627, 1631, 1864
SfcI	CTRYAG	2 cut(s)	642, 2025
Sfr274I	CTCGAG	3 cut(s)	243, 656, 822
Sfr303I	CCGCGG	1 cut(s)	1327
SgrBI	CCGCGG	1 cut(s)	1327
SinI	GGWCC	2 cut(s)	235, 1124
SlaI	CTCGAG	3 cut(s)	243, 656, 822
SmiMI	CAYNNNNRTG	4 cut(s)	1498, 1803, 2093, 2138
SmlI	CTYRAG	7 cut(s)	243, 624, 656, 822, 1240, 1247, 1666
SmoI	CTYRAG	7 cut(s)	243, 624, 656, 822, 1240, 1247, 1666
SsiI	CCGC	7 cut(s)	221, 325, 695, 1324, 1326, 1610, 2148
SspMI	CTAG	6 cut(s)	69, 351, 789, 1007, 1224, 1661
SstI	GAGCTC	2 cut(s)	375, 2115
StyD4I	CCNGG	9 cut(s)	122, 237, 249, 587, 1126, 1649, 1877, 2106, 2115
StyI	CCWWGG	3 cut(s)	350, 1395, 1464
TaaI	ACNGT	3 cut(s)	541, 570, 1817
TaiI	ACGT	1 cut(s)	1902
TaqII	GACCGA	1 cut(s)	2066
TatI	WGTACW	3 cut(s)	1267, 1734, 1795
TauI	GCSGC	1 cut(s)	328
TfiI	GAWTC	7 cut(s)	95, 652, 1010, 1163, 1436, 2120, 2288
Tru1I	TTAA	7 cut(s)	260, 860, 1190, 1479, 1583, 1631, 2325
Tru9I	TTAA	7 cut(s)	260, 860, 1190, 1479, 1583, 1631, 2325
TscAI	CASTG	3 cut(s)	413, 1089, 1284
TseFI	GTSAC	2 cut(s)	1357, 2047
TseI	GCWGC	8 cut(s)	584, 641, 1055, 1097, 2021, 2081, 2084, 2312
Tsp45I	GTSAC	2 cut(s)	1357, 2047
TspGWI	ACGGA	1 cut(s)	349
TspRI	CASTG	3 cut(s)	413, 1089, 1284
Van91I	CCANNNNNTGG	2 cut(s)	1769, 2005
VpaK11BI	GGWCC	2 cut(s)	235, 1124
VspI	ATTAAT	2 cut(s)	860, 1479
XagI	CCTNNNNNAGG	1 cut(s)	2140
XapI	RAATTY	6 cut(s)	8, 463, 995, 1234, 2099, 2276
XbaI	TCTAGA	1 cut(s)	1006
XceI	RCATGY	2 cut(s)	443, 613
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1027
XhoI	CTCGAG	3 cut(s)	243, 656, 822
XmaJI	CCTAGG	1 cut(s)	350
XmiI	GTMKAC	3 cut(s)	536, 2039, 2208
XmnI	GAANNNNTTC	4 cut(s)	8, 345, 570, 1558
XspI	CTAG	6 cut(s)	69, 351, 789, 1007, 1224, 1661
ZrmI	AGTACT	1 cut(s)	1269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.