Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0004598

Physical Location & Seq

Genomic Coordinates Forward (+)

27884567 .. 27885642

Gene Structure 1076 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 612 bp

ATGGCATTCAAAGGAATTGAGATGGTTCTAGCCCTGGTCCTTGGGTCCATGCTATTGAGTGGAGCCATGGCTCAGTTAAGCTGCACCAGCACAATCACAAGCCTGGCTCCATGCCTCAACTTCGTTACTGGAAGCTCAGCAAACCCTTCATCTTCTTGCTGCTCACAGCTCTCTAATGTTGTCCAGTCATCACCTCAGTGCCTTTGCTCTTTGGTCAACGGTGCAAGCTCATTGGGCATCACCATAAACCAAACACTTGCTTTGTCATTGCCCGGTGCTTGCAAAGTGCAAACTCCTCCCCCTAGCCGATGTCAAGGTGCCAATGGACCTTCAACTTCATCAGGTGCCAATGGACCTTCAACTTCATCATCAACTCCTCCAGCAAGTTCGCCAGCAGCTTCCTCCAATGAAACACCTTCAGAAGCTTCTACTCCTGAAGCATCCATTTCGCCATCAGCCTCGGACATTCCTTCATCTTCAGGAGGAGGTTCAAAAACAGTCCCATCCTCAAACGGTAACACATCCGACGGAAGCACCAGCAGAACACCTCTTCACTTTGTGCTCTTCCTCGTTTTTGTTATGTCATGTGCTTCTTCTCTCTCCAAATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0031224 GO:0031225 GO:0031226 GO:0044425 GO:0044459 GO:0044464 GO:0046658 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LTP_2

Protein Analysis

204

Amino Acids

19.98

Weight (kDa)

6.51

Isoelectric Point (pI)

57.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LTP_2	PF14368	9 - 104	3.6e-19	Probable lipid transfer
Tryp_alpha_amyl	PF00234	28 - 104	1.3e-12	Protease inhibitor/seed storage/LTP family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004598)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130 AT2G48130
fragaria_vesca	FvH4_2g23211 FvH4_2g23211 FvH4_2g23220
malus_domestica	MD11G1282000.v1.1 MD11G1282300.v1.1
prunus_persica	Prupe.8G237900_v2.0.a1
pyrus_communis	pycom11g25000
rosa_chinensis	RchiOBHm_Chr6g0290491 RchiOBHm_Chr6g0290511
rosa_laevigata	RLG00000012208 RLG00000012210
rosa_multiflora	Rmu_co8420797.1_g000001 Rmu_sc0002890.1_g000017 Rmu_sc0002890.1_g000019
rosa_roxburghii	Rroxscaffold_7G00176990 Rroxscaffold_7G00177010
rosa_rugosa	Rorug06G0212900
rosa_samantha	Rh6AG323400 Rh6BG330600 Rh6BG330800 Rh6CG336900 Rh6DG323800 Rh6DG324000
rosa_wichuraiana	Rw6G028040 Rw6G028050

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	317, 344
AcsI	RAATTY	1 cut(s)	605
AcuI	CTGAAG	3 cut(s)	402, 456, 462
AdeI	CACNNNGTG	1 cut(s)	559
AgsI	TTSAA	4 cut(s)	10, 333, 360, 492
AjnI	CCWGG	2 cut(s)	33, 102
AleI	CACNNNNGTG	1 cut(s)	196
AluBI	AGCT	6 cut(s)	81, 135, 169, 228, 398, 425
AluI	AGCT	6 cut(s)	81, 135, 169, 228, 398, 425
Alw21I	GWGCWC	1 cut(s)	564
ApeKI	GCWGC	3 cut(s)	81, 159, 395
ApoI	RAATTY	1 cut(s)	605
AspS9I	GGNCC	4 cut(s)	37, 45, 326, 353
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	2 cut(s)	183, 232
AvaII	GGWCC	4 cut(s)	37, 45, 326, 353
BanI	GGYRCC	2 cut(s)	317, 344
Bbv12I	GWGCWC	1 cut(s)	564
BbvI	GCAGC	3 cut(s)	68, 146, 407
BccI	CCATC	3 cut(s)	16, 460, 511
BcgI	CGANNNNNNTGC	2 cut(s)	429, 463
BciT130I	CCWGG	2 cut(s)	35, 104
BcnI	CCSGG	1 cut(s)	273
BfaI	CTAG	2 cut(s)	29, 303
BisI	GCNGC	3 cut(s)	82, 160, 396
BlpI	GCTNAGC	1 cut(s)	136
BlsI	GCNGC	3 cut(s)	83, 161, 397
Bme1390I	CCNGG	3 cut(s)	35, 104, 273
Bme18I	GGWCC	4 cut(s)	37, 45, 326, 353
BmgT120I	GGNCC	4 cut(s)	37, 45, 326, 353
BmiI	GGNNCC	5 cut(s)	46, 64, 108, 319, 346
BmrFI	CCNGG	3 cut(s)	35, 104, 273
BmsI	GCATC	2 cut(s)	246, 449
BpmI	CTGGAG	1 cut(s)	363
Bpu1102I	GCTNAGC	1 cut(s)	136
BpuMI	CCSGG	1 cut(s)	273
BsaJI	CCNNGG	4 cut(s)	33, 40, 66, 459
Bse1I	ACTGG	2 cut(s)	133, 184
Bse3DI	GCAATG	1 cut(s)	266
BseBI	CCWGG	2 cut(s)	35, 104
BseDI	CCNNGG	4 cut(s)	33, 40, 66, 459
BseGI	GGATG	3 cut(s)	440, 503, 521
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	3 cut(s)	86, 150, 209
BseNI	ACTGG	2 cut(s)	133, 184
BseRI	GAGGAG	3 cut(s)	285, 366, 498
BseXI	GCAGC	3 cut(s)	68, 146, 407
BsgI	GTGCAG	1 cut(s)	67
BshNI	GGYRCC	2 cut(s)	317, 344
BsiHKAI	GWGCWC	1 cut(s)	564
BsiSI	CCGG	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	485
BsmFI	GGGAC	1 cut(s)	485
BsmI	GAATGC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	564
Bsp1720I	GCTNAGC	1 cut(s)	136
Bsp19I	CCATGG	1 cut(s)	66
BspCNI	CTCAG	3 cut(s)	85, 149, 208
BspLI	GGNNCC	5 cut(s)	46, 64, 108, 319, 346
BspQI	GCTCTTC	1 cut(s)	569
BspT107I	GGYRCC	2 cut(s)	317, 344
BsrDI	GCAATG	1 cut(s)	266
BsrI	ACTGG	2 cut(s)	133, 184
BssECI	CCNNGG	4 cut(s)	33, 40, 66, 459
BssT1I	CCWWGG	2 cut(s)	40, 66
Bst2UI	CCWGG	2 cut(s)	35, 104
Bst4CI	ACNGT	3 cut(s)	221, 499, 515
Bst6I	CTCTTC	2 cut(s)	555, 569
BstC8I	GCNNGC	3 cut(s)	226, 280, 393
BstDEI	CTNAG	3 cut(s)	72, 136, 195
BstDSI	CCRYGG	1 cut(s)	66
BstF5I	GGATG	3 cut(s)	440, 503, 521
BstMWI	GCNNNNNNNGC	2 cut(s)	87, 234
BstNI	CCWGG	2 cut(s)	35, 104
BstSCI	CCNGG	3 cut(s)	33, 102, 271
BstV1I	GCAGC	3 cut(s)	68, 146, 407
BtgI	CCRYGG	1 cut(s)	66
BtsCI	GGATG	3 cut(s)	440, 503, 521
BtsIMutI	CAGTG	1 cut(s)	203
Cac8I	GCNNGC	3 cut(s)	226, 280, 393
Cfr13I	GGNCC	4 cut(s)	37, 45, 326, 353
CviAII	CATG	4 cut(s)	49, 67, 111, 585
DdeI	CTNAG	3 cut(s)	72, 136, 195
DraIII	CACNNNGTG	1 cut(s)	559
Eam1104I	CTCTTC	2 cut(s)	555, 569
EarI	CTCTTC	2 cut(s)	555, 569
Eco130I	CCWWGG	2 cut(s)	40, 66
Eco47I	GGWCC	4 cut(s)	37, 45, 326, 353
Eco57I	CTGAAG	3 cut(s)	402, 456, 462
EcoRII	CCWGG	2 cut(s)	33, 102
EcoT14I	CCWWGG	2 cut(s)	40, 66
ErhI	CCWWGG	2 cut(s)	40, 66
FaeI	CATG	4 cut(s)	52, 70, 114, 588
FaiI	YATR	6 cut(s)	50, 68, 112, 245, 581, 586
FaqI	GGGAC	1 cut(s)	485
FatI	CATG	4 cut(s)	48, 66, 110, 584
Fnu4HI	GCNGC	3 cut(s)	82, 160, 396
FokI	GGATG	3 cut(s)	427, 490, 508
Fsp4HI	GCNGC	3 cut(s)	82, 160, 396
FspBI	CTAG	2 cut(s)	29, 303
GluI	GCNGC	3 cut(s)	82, 160, 396
GsuI	CTGGAG	1 cut(s)	363
HapII	CCGG	1 cut(s)	273
Hin1II	CATG	4 cut(s)	52, 70, 114, 588
HincII	GTYRAC	1 cut(s)	217
HindII	GTYRAC	1 cut(s)	217
HindIII	AAGCTT	1 cut(s)	423
HpaII	CCGG	1 cut(s)	273
HphI	GGTGA	2 cut(s)	183, 232
Hpy166II	GTNNAC	1 cut(s)	217
Hpy188I	TCNGA	3 cut(s)	421, 463, 526
Hpy188III	TCNNGA	2 cut(s)	434, 480
Hpy8I	GTNNAC	1 cut(s)	217
Hpy99I	CGWCG	1 cut(s)	530
HpyAV	CCTTC	5 cut(s)	156, 339, 366, 426, 480
HpyCH4III	ACNGT	3 cut(s)	221, 499, 515
HpyCH4V	TGCA	4 cut(s)	84, 224, 282, 289
HpyF10VI	GCNNNNNNNGC	2 cut(s)	87, 234
HpyF3I	CTNAG	3 cut(s)	72, 136, 195
Hsp92II	CATG	4 cut(s)	52, 70, 114, 588
LguI	GCTCTTC	1 cut(s)	569
LmnI	GCTCC	2 cut(s)	62, 112
Lsp1109I	GCAGC	3 cut(s)	68, 146, 407
LweI	GCATC	2 cut(s)	246, 449
MaeI	CTAG	2 cut(s)	29, 303
MaeIII	GTNAC	2 cut(s)	124, 515
MboII	GAAGA	5 cut(s)	144, 468, 542, 556, 585
MhlI	GDGCHC	1 cut(s)	564
MluCI	AATT	2 cut(s)	15, 605
MmeI	TCCRAC	1 cut(s)	549
MseI	TTAA	1 cut(s)	77
MslI	CAYNNNNRTG	1 cut(s)	196
MspI	CCGG	1 cut(s)	273
MspR9I	CCNGG	3 cut(s)	35, 104, 273
Mva1269I	GAATGC	1 cut(s)	5
MvaI	CCWGG	2 cut(s)	35, 104
MwoI	GCNNNNNNNGC	2 cut(s)	87, 234
NciI	CCSGG	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	66
NlaIII	CATG	4 cut(s)	52, 70, 114, 588
NlaIV	GGNNCC	5 cut(s)	46, 64, 108, 319, 346
OliI	CACNNNNGTG	1 cut(s)	196
PciSI	GCTCTTC	1 cut(s)	569
PctI	GAATGC	1 cut(s)	5
PkrI	GCNGC	3 cut(s)	83, 161, 397
Psp6I	CCWGG	2 cut(s)	33, 102
PspGI	CCWGG	2 cut(s)	33, 102
PspN4I	GGNNCC	5 cut(s)	46, 64, 108, 319, 346
PspPI	GGNCC	4 cut(s)	37, 45, 326, 353
RseI	CAYNNNNRTG	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	569
SaqAI	TTAA	1 cut(s)	77
SatI	GCNGC	3 cut(s)	82, 160, 396
Sau96I	GGNCC	4 cut(s)	37, 45, 326, 353
ScrFI	CCNGG	3 cut(s)	35, 104, 273
SduI	GDGCHC	1 cut(s)	564
SfaNI	GCATC	2 cut(s)	246, 449
SinI	GGWCC	4 cut(s)	37, 45, 326, 353
SmiMI	CAYNNNNRTG	1 cut(s)	196
Sse9I	AATT	2 cut(s)	15, 605
SspMI	CTAG	2 cut(s)	29, 303
StyD4I	CCNGG	3 cut(s)	33, 102, 271
StyI	CCWWGG	2 cut(s)	40, 66
TaaI	ACNGT	3 cut(s)	221, 499, 515
TasI	AATT	2 cut(s)	15, 605
Tru1I	TTAA	1 cut(s)	77
Tru9I	TTAA	1 cut(s)	77
TscAI	CASTG	1 cut(s)	203
TseI	GCWGC	3 cut(s)	81, 159, 395
TspDTI	ATGAA	5 cut(s)	138, 327, 354, 423, 462
TspGWI	ACGGA	1 cut(s)	543
TspRI	CASTG	1 cut(s)	203
VpaK11BI	GGWCC	4 cut(s)	37, 45, 326, 353
XapI	RAATTY	1 cut(s)	605
XspI	CTAG	2 cut(s)	29, 303

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.