pycom11g25390

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0013341
Physical Location & Seq
Forward (+)
28234678 .. 28237151
2474 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 561 bp
ATGGCTGCTCATGAGGAAGGAGAGGTTGGTTTCGAAGAAGGAATGTTGTGGCTGCCGTCACAAGTTTTGGATGAAGCAATATGTCACACAAAGGCGTATTCGAGGCTCCATGTAAAACACCACCACTACCACAGTGATCAATTGGATTCGAAATCTAGCTCGATGAGACCATATCATAGACCAAAAGTCAATGTGAATTGGTCATCCGGAGGACCTGGAATGCAAGCCATCTTCCTGGATTCTAGTCAAAAGTCATGTGGCACTGGTGTTTTTCTTCCACAGCGAGCAGGCACCCACTTCATCAGAAGTAAAAAACCAGCTTGTGCTCCCGTTCTGCTGCCCTCTCGTGTGGTTCAAGCTCTGAACCTCAACGTGCATGCACTAGGCCTGCAAATTTCACCTCGACAAGATTCTAAAGAACATAAGTGGAAAAGTGAAGACTACTTGGTAGCTCAAAACAGGAATGGAAATAAGGATGTTTCGTCTACTCAATGCTACATTATTTCCCAAAATCCGAATTCTTCACCAGAGTTGTTTCTTCCAAAGGAATGGACGTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

20.92

Weight (kDa)

8.66

Isoelectric Point (pI)

59.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0013341)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G02830 AT4G02830 AT4G02830
fragaria_vesca FvH4_2g23650
malus_domestica MD03G1266000.v1.1 MD11G1286400.v1.1
prunus_persica Prupe.8G241700_v2.0.a1
pyrus_communis pycom03g21250 pycom11g25390
rosa_chinensis RchiOBHm_Chr6g0291121
rosa_laevigata RLG00000012142
rosa_roxburghii Rroxscaffold_7G00176360
rosa_rugosa Rorug06G0217800
rosa_samantha Rh6AG328000 Rh6BG335500 Rh6CG341700 Rh6DG328900
rosa_wichuraiana Rw6G028530

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 290
AccI GTMKAC 1 cut(s) 485
AccIII TCCGGA 1 cut(s) 206
AcsI RAATTY 2 cut(s) 393, 517
AfaI GTAC 1 cut(s) 557
AgsI TTSAA 1 cut(s) 356
AhdI GACNNNNNGTC 1 cut(s) 185
AjnI CCWGG 2 cut(s) 214, 234
AjuI GAANNNNNNNTTGG 2 cut(s) 9, 41
AluBI AGCT 4 cut(s) 159, 320, 359, 452
AluI AGCT 4 cut(s) 159, 320, 359, 452
Alw21I GWGCWC 1 cut(s) 328
Alw26I GTCTC 1 cut(s) 160
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 1 cut(s) 385
ApeKI GCWGC 3 cut(s) 5, 52, 337
ApoI RAATTY 2 cut(s) 393, 517
AspS9I GGNCC 1 cut(s) 212
AsuHPI GGTGA 2 cut(s) 390, 516
AsuII TTCGAA 2 cut(s) 33, 149
AvaII GGWCC 1 cut(s) 212
BanI GGYRCC 1 cut(s) 290
BauI CACGAG 1 cut(s) 345
BbsI GAAGAC 1 cut(s) 444
Bbv12I GWGCWC 1 cut(s) 328
BbvI GCAGC 2 cut(s) 39, 324
BccI CCATC 1 cut(s) 236
BceAI ACGGC 1 cut(s) 40
BciT130I CCWGG 2 cut(s) 216, 236
BclI TGATCA 1 cut(s) 136
BcoDI GTCTC 1 cut(s) 160
BfaI CTAG 3 cut(s) 156, 243, 383
BisI GCNGC 3 cut(s) 6, 53, 338
BlsI GCNGC 3 cut(s) 7, 54, 339
Bme1390I CCNGG 2 cut(s) 216, 236
Bme18I GGWCC 1 cut(s) 212
BmeRI GACNNNNNGTC 1 cut(s) 185
BmgT120I GGNCC 1 cut(s) 212
BmiI GGNNCC 2 cut(s) 107, 292
BmrFI CCNGG 2 cut(s) 216, 236
BpiI GAAGAC 1 cut(s) 444
Bpu14I TTCGAA 2 cut(s) 33, 149
BsaI GGTCTC 1 cut(s) 160
BsaWI WCCGGW 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 268
BseAI TCCGGA 1 cut(s) 206
BseBI CCWGG 2 cut(s) 216, 236
BseGI GGATG 3 cut(s) 76, 203, 481
BseNI ACTGG 1 cut(s) 268
BseXI GCAGC 2 cut(s) 39, 324
BshFI GGCC 1 cut(s) 387
BshNI GGYRCC 1 cut(s) 290
BsiHKAI GWGCWC 1 cut(s) 328
BsiSI CCGG 1 cut(s) 207
BsmAI GTCTC 1 cut(s) 160
BsmI GAATGC 1 cut(s) 225
BsnI GGCC 1 cut(s) 387
Bso31I GGTCTC 1 cut(s) 160
Bsp119I TTCGAA 2 cut(s) 33, 149
Bsp1286I GDGCHC 1 cut(s) 328
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 1 cut(s) 136
BspANI GGCC 1 cut(s) 387
BspEI TCCGGA 1 cut(s) 206
BspHI TCATGA 1 cut(s) 10
BspLI GGNNCC 2 cut(s) 107, 292
BspT104I TTCGAA 2 cut(s) 33, 149
BspT107I GGYRCC 1 cut(s) 290
BspTNI GGTCTC 1 cut(s) 160
BsrI ACTGG 1 cut(s) 268
BssMI GATC 1 cut(s) 136
BssSI CACGAG 1 cut(s) 345
Bst2BI CACGAG 1 cut(s) 345
Bst2UI CCWGG 2 cut(s) 216, 236
Bst4CI ACNGT 1 cut(s) 134
BstBI TTCGAA 2 cut(s) 33, 149
BstC8I GCNNGC 5 cut(s) 225, 285, 289, 378, 389
BstF5I GGATG 3 cut(s) 76, 203, 481
BstKTI GATC 1 cut(s) 139
BstMAI GTCTC 1 cut(s) 160
BstMBI GATC 1 cut(s) 136
BstNI CCWGG 2 cut(s) 216, 236
BstNSI RCATGY 1 cut(s) 380
BstSCI CCNGG 2 cut(s) 214, 234
BstV1I GCAGC 2 cut(s) 39, 324
BstV2I GAAGAC 1 cut(s) 444
BstXI CCANNNNNNTGG 2 cut(s) 235, 549
BsuRI GGCC 1 cut(s) 387
BtsCI GGATG 3 cut(s) 76, 203, 481
BtsIMutI CAGTG 2 cut(s) 139, 261
Cac8I GCNNGC 5 cut(s) 225, 285, 289, 378, 389
CciI TCATGA 1 cut(s) 10
Cfr13I GGNCC 1 cut(s) 212
Csp6I GTAC 1 cut(s) 556
CviAII CATG 4 cut(s) 11, 110, 255, 377
CviJI RGCY 9 cut(s) 5, 52, 106, 159, 227, 320, 359, 387, 452
CviKI_1 RGCY 9 cut(s) 5, 52, 106, 159, 227, 320, 359, 387, 452
CviQI GTAC 1 cut(s) 556
DpnI GATC 1 cut(s) 138
DpnII GATC 1 cut(s) 136
DriI GACNNNNNGTC 1 cut(s) 185
Eam1105I GACNNNNNGTC 1 cut(s) 185
Eco147I AGGCCT 1 cut(s) 387
Eco31I GGTCTC 1 cut(s) 160
Eco47I GGWCC 1 cut(s) 212
EcoO109I RGGNCCY 1 cut(s) 212
EcoRI GAATTC 1 cut(s) 517
EcoRII CCWGG 2 cut(s) 214, 234
FaeI CATG 4 cut(s) 14, 113, 258, 380
FaiI YATR 8 cut(s) 12, 82, 111, 172, 177, 256, 378, 423
FatI CATG 4 cut(s) 10, 109, 254, 376
FbaI TGATCA 1 cut(s) 136
FblI GTMKAC 1 cut(s) 485
Fnu4HI GCNGC 3 cut(s) 6, 53, 338
FokI GGATG 3 cut(s) 83, 190, 488
Fsp4HI GCNGC 3 cut(s) 6, 53, 338
FspBI CTAG 3 cut(s) 156, 243, 383
GluI GCNGC 3 cut(s) 6, 53, 338
HaeIII GGCC 1 cut(s) 387
HapII CCGG 1 cut(s) 207
Hin1II CATG 4 cut(s) 14, 113, 258, 380
HinfI GANTC 3 cut(s) 146, 239, 410
HpaII CCGG 1 cut(s) 207
HphI GGTGA 2 cut(s) 390, 516
Hpy166II GTNNAC 1 cut(s) 486
Hpy188I TCNGA 3 cut(s) 305, 363, 516
Hpy188III TCNNGA 2 cut(s) 11, 207
Hpy8I GTNNAC 1 cut(s) 486
HpyAV CCTTC 2 cut(s) 11, 32
HpyCH4III ACNGT 1 cut(s) 134
HpyCH4IV ACGT 2 cut(s) 372, 554
HpyCH4V TGCA 4 cut(s) 223, 376, 380, 391
HpySE526I ACGT 2 cut(s) 372, 554
Hsp92II CATG 4 cut(s) 14, 113, 258, 380
Kpn2I TCCGGA 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 136
Kzo9I GATC 1 cut(s) 136
LmnI GCTCC 2 cut(s) 111, 331
Lsp1109I GCAGC 2 cut(s) 39, 324
MaeI CTAG 3 cut(s) 156, 243, 383
MaeII ACGT 2 cut(s) 372, 554
MaeIII GTNAC 2 cut(s) 57, 83
MalI GATC 1 cut(s) 138
MboI GATC 1 cut(s) 136
MboII GAAGA 6 cut(s) 47, 223, 266, 449, 513, 530
MfeI CAATTG 1 cut(s) 140
MhlI GDGCHC 1 cut(s) 328
MluCI AATT 4 cut(s) 140, 196, 393, 517
MnlI CCTC 7 cut(s) 7, 16, 96, 203, 352, 377, 411
MroI TCCGGA 1 cut(s) 206
MspI CCGG 1 cut(s) 207
MspR9I CCNGG 2 cut(s) 216, 236
MunI CAATTG 1 cut(s) 140
Mva1269I GAATGC 1 cut(s) 225
MvaI CCWGG 2 cut(s) 216, 236
NdeII GATC 1 cut(s) 136
NlaIII CATG 4 cut(s) 14, 113, 258, 380
NlaIV GGNNCC 2 cut(s) 107, 292
NmuCI GTSAC 2 cut(s) 57, 83
NspI RCATGY 1 cut(s) 380
NspV TTCGAA 2 cut(s) 33, 149
PaeI GCATGC 1 cut(s) 380
PagI TCATGA 1 cut(s) 10
PceI AGGCCT 1 cut(s) 387
PctI GAATGC 1 cut(s) 225
PfeI GAWTC 3 cut(s) 146, 239, 410
PfoI TCCNGGA 1 cut(s) 234
PkrI GCNGC 3 cut(s) 7, 54, 339
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 2 cut(s) 214, 234
PspGI CCWGG 2 cut(s) 214, 234
PspN4I GGNNCC 2 cut(s) 107, 292
PspPI GGNCC 1 cut(s) 212
PspPPI RGGWCCY 1 cut(s) 212
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
SatI GCNGC 3 cut(s) 6, 53, 338
Sau3AI GATC 1 cut(s) 136
Sau96I GGNCC 1 cut(s) 212
ScrFI CCNGG 2 cut(s) 216, 236
SduI GDGCHC 1 cut(s) 328
SfuI TTCGAA 2 cut(s) 33, 149
SinI GGWCC 1 cut(s) 212
SphI GCATGC 1 cut(s) 380
Sse9I AATT 4 cut(s) 140, 196, 393, 517
SseBI AGGCCT 1 cut(s) 387
SspMI CTAG 3 cut(s) 156, 243, 383
StuI AGGCCT 1 cut(s) 387
StyD4I CCNGG 2 cut(s) 214, 234
TaaI ACNGT 1 cut(s) 134
TaiI ACGT 2 cut(s) 375, 557
TaqI TCGA 5 cut(s) 33, 101, 149, 161, 403
TasI AATT 4 cut(s) 140, 196, 393, 517
TfiI GAWTC 3 cut(s) 146, 239, 410
TscAI CASTG 2 cut(s) 139, 268
TseFI GTSAC 2 cut(s) 57, 83
TseI GCWGC 3 cut(s) 5, 52, 337
Tsp45I GTSAC 2 cut(s) 57, 83
TspDTI ATGAA 2 cut(s) 87, 289
TspRI CASTG 2 cut(s) 139, 268
VpaK11BI GGWCC 1 cut(s) 212
XapI RAATTY 2 cut(s) 393, 517
XceI RCATGY 1 cut(s) 380
XmiI GTMKAC 1 cut(s) 485
XspI CTAG 3 cut(s) 156, 243, 383
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.