pycom11g25990

Autophagy-related protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0006636
Physical Location & Seq
Forward (+)
28658033 .. 28663495
5463 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 3033 bp
ATGAAGAAGAGTAAGGGGAAGAACAATGGCTTGTTGCCGAACTCGCTTAGGATTATTTCGTCGTGCCTTAAAACTGTGTCGACGAATGCCAGCACCGTCGCTTCTTCTGTTCGCTCTGCCGGTGCGTCTGTAGCTGCTTCGATTTCTGCTTCCGAGGATCAGAAGGATCAGGTAACCTGGGCTGGCTTTGACAGGCTAGAGTTTAGTCAGTCTACCTTCAAGCATGTTCTCTTACTCGGTTATCAAAATGGGTTTCAAGTTTTCGATATGGAGGATGCCTCTAATTTCAGTGAACTAGTTTCAAAGCGCGATGGCTCGGTTTCATTCTTACAGATGCAGCCCTTTCCTGCGGCTTCTGATGGTAACCAAGGGTTCAGAACCACGCATCCTTTGCTGCTGGTTGTTGCTGGAGATGACACTAATGGTGCAGGAACTGTTCATAATACTAGCTATTTGGGAGTGGCAGGCAGAGATGGTAATTTGGAGTCTCGGCCAGGGAACCCTGTCAGCTCTCCTACAGCTGTTCGGTTTTACTCTATTAGGTCCCAAGGTTATGTACATGTTCTGAGGTTTCGGTCTGCTGTGTGTATGATTAGATGCAGTCCTCGGATTGTAGCTGTGGGTCTTGCAACTCAAATTTACTGTTTTGACGCGCTCACCCTTGAAAACAGGTTCAGTGTTCTTACCTATCCTGTTCCTCAGCTAGCAGGGCAAGGATCAAATGGGTTTAATGTTGGTTACGGCCCAATGGCTGTGGGTCCAAGGTGGTTAGCCTATGCTTCCAACAGCCCTCTAGCGTCAAACGCAAGTCGCTTAGGCCCCCAAAACCTAACTCCTTCCCCAGGAGTTAGTCCATCTACATCACCTGGCAATGGTAGTTATGTGGCTCGTTATGCAATGGAGTCTAGTAAACAGTTGGCTGCTGGAATAATTAACCTGGGTGACATGGGATGCAAAACCTTGTATAAATACTGTCAAGAGATGCTCCCTATTTTGTGTAATGATCGATCTAACTCTCCAATATTGTCAAATTCAGGCTGGAAAGTTAGCAGGCATGCAGGCACAGAAATGGATAATGCAGGGATGGTTGTTGTCAAAGATTTTGTTACCCGAGCTGTTATATCGCAGTTTAAGGCTCATACTAGTCCAATATCTGCGCTGTGTTTCGATCCTAGTGGGACCCTTCTGGTTACTGCCTCAGTGTATGGAAATAATGTTAACGTTTTCCGGATAATGCCTTCATGCAAACGCACTGGATCAGGTGGTCAAAACTTCGATTGGAGCACTTCTCATGTGCATCTTTACAAACTGCATCGTGGAATAACATCAGCTATGATCCAGGACATTTGCTTTAGTCATTACAGTCAGTGGGTTGCAATTGTTTCATCCAAGGGGACCTGCCATGTTTTTGTTTTATCCCCTTTTGGTGGCGATGTTGGATTTCGGCTTCTTAATAGTCACAGTGAAGAACCCTCCCTATGTCCAGTTTTATCTCTACCTTGGTGGTCTGCTTCTTCTTGCGTCATTAATCAACAATCTTTTCCACCGCCACCATCTGTTGCTCTTTCCGTGGTGAGCAGGATAAAGTACAGTAGTTTTGGATGGCTTAGCACAGCCAACAATGCCACTGCTTCAGCGACAGGGAAGGTCTTTGTGCCATCTGGTGCTGTTGCTGCAGTTTTCCATAATTCCTTATCTCAAAGTCTTCAGCACAGTAACTCAAGGACCAGTACCTTGGAACATCTATTAGTTTATACTCCATCAGGTCATGTAGTTCAACATGAACTTCAGCCAAGGATAGGGGTAGAACAGAGTCATAGTGGTATAAGTACCCAGGCAGCCACGTCTATGCATATTCAGGACGAAGAGCTGAGAGTGAAAGTTGAACCCATTCAATGGTGGGATGTATGTAGGCGGTCAGACTGGCAGGAAAGAGAGGATAGTAGTCTTGGTACCACATTCGATAGACAAGAGGTGGCTGGCATACTTCAGAACAAATCAGGTTCTGATGGTACTCACGGAATGGAATCTCTAGATTTAAATGGTACTGTTGGGGGGAAAAGGAGACCGGAAACTTATTCTGGGAAGGTCCATGATGGGTCCCACTGGTACCTCTCTAATGCAGAGGTGCAGATCAGTTCTTTGAGATTACCAATATGGCAAAAGTCTAAGATTTGTTTTTACACGATGGGCGATCCAAGAGCTGATAGTTTCACTGGTGGAGAGTTTGAAATTGAAAAGGTCCCTGTTCATGAAATTGAAATGAGACAGAAAGATTTGTTACCTGTTTTCGAGCAGTTCCATTTCATCAAATCAAGCTGGGATGACAGAGGCCTTGCTGGTGGGAGGTATCCCAATCATACTTCGCCGCCTCATCCAGCTGAAAACAAGATCTTGGAAGAGACTGTTATATGTCACTCGAAGCCTGCATCACTTAGCTCCACTGAAAGCTCAGATGGGGGTTCGTCAAGAAGAATTGAGCATTTTCTTGAGTTCGATCAAATAAACAATGAGAAGCCCCGCACAACAGTTTATCAGACCTTGAATGGCTCGGAAAGAAGACCCAATACAATTGTTGAGCCTTCATTAGAAAACCATATGTCTTTCAGCATTCTGTGTACTCCATCTGAACATTTTAAGAACATCGATTCTCAAATCAACGGCTGTGTCACCAACGGTTTGCCTGTGTTAGAAAGTACCTTGATTCCAGGAGGAAGAGTTTCTGCCGAAGAAGGCCTAGCATTGAAAGCAATTGGGATCAGGGAGGTCTCAGTTTTATACTCTGATCAACGTGCTTCGAGTACCGATATTGTTGCAGAGGGGGCTTCCACTTTGCAGCATCCAATAGATCTTTCACAGTTTTTCCAGGAGGAGCATTGTAACGCACTGGAGAAGAACGGATGCAATGGGTTAACTGAAGTCATAGCCGAGGATGTTGACAGCGACAGTAGCCACTGCGAAAAGGTGAAACCCGAAAACGAGGAAGATGGTGAAATGCTTGGAGGCATGTTTGCCTTTTCTGATGAAGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000226 GO:0000785 GO:0001952 GO:0001953 GO:0003674 GO:0003682 GO:0005102 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0006355 GO:0006357 GO:0006810 GO:0006950 GO:0006996 GO:0007010 GO:0007017 GO:0007030 GO:0007162 GO:0007275 GO:0008047 GO:0008092 GO:0008134 GO:0008150 GO:0009605 GO:0009653 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010256 GO:0010468 GO:0010556 GO:0010557 GO:0010594 GO:0010595 GO:0010604 GO:0010628 GO:0010632 GO:0010634 GO:0010638 GO:0010698 GO:0010810 GO:0010812 GO:0015630 GO:0015631 GO:0016043 GO:0016192 GO:0019219 GO:0019222 GO:0019899 GO:0030155 GO:0030234 GO:0030334 GO:0030335 GO:0031023 GO:0031252 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031344 GO:0031346 GO:0031667 GO:0031974 GO:0031981 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032878 GO:0032879 GO:0032880 GO:0032956 GO:0032970 GO:0033043 GO:0033157 GO:0034260 GO:0035035 GO:0035148 GO:0035239 GO:0035257 GO:0035295 GO:0035327 GO:0040012 GO:0040017 GO:0042221 GO:0042393 GO:0042594 GO:0043085 GO:0043086 GO:0043087 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043547 GO:0043627 GO:0044087 GO:0044089 GO:0044092 GO:0044093 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0045111 GO:0045893 GO:0045935 GO:0045944 GO:0048487 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048646 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051128 GO:0051129 GO:0051130 GO:0051171 GO:0051173 GO:0051179 GO:0051222 GO:0051223 GO:0051234 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0051270 GO:0051272 GO:0051336 GO:0051345 GO:0051346 GO:0051427 GO:0051489 GO:0051491 GO:0051493 GO:0051495 GO:0051716 GO:0051893 GO:0051895 GO:0060255 GO:0060341 GO:0060491 GO:0065007 GO:0065009 GO:0070013 GO:0070201 GO:0070887 GO:0071391 GO:0071840 GO:0080090 GO:0090087 GO:0090109 GO:0090316 GO:0090630 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0120032 GO:0120034 GO:0120035 GO:1901888 GO:1901889 GO:1902680 GO:1903391 GO:1903392 GO:1903506 GO:1903508 GO:1903827 GO:1903829 GO:1904951 GO:2000112 GO:2000114 GO:2000145 GO:2000147 GO:2000249 GO:2000251 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
BCAS3 WD40

Protein Analysis

1011

Amino Acids

109.81

Weight (kDa)

6.09

Isoelectric Point (pI)

47.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BCAS3_WD40 PF21034 76 - 482 3.2e-32 BCAS3, WD40 repeat
BCAS3 PF12490 618 - 765 1.1e-46 BCAS3 microtubule associated cell migration factor, C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1406
Acc65I GGTACC 2 cut(s) 1952, 2109
AccB1I GGYRCC 2 cut(s) 1952, 2109
AccB7I CCANNNNNTGG 1 cut(s) 1896
AccI GTMKAC 2 cut(s) 80, 212
AccII CGCG 2 cut(s) 309, 653
AccIII TCCGGA 1 cut(s) 1227
AciI CCGC 5 cut(s) 350, 1547, 1915, 2369, 2521
AclI AACGTT 1 cut(s) 1221
AclWI GGATC 8 cut(s) 165, 174, 724, 1163, 1264, 1330, 2189, 2765
AcoI YGGCCR 1 cut(s) 491
AcsI RAATTY 2 cut(s) 636, 1030
AcuI CTGAAG 5 cut(s) 1617, 1691, 1772, 1973, 2937
AfiI CCNNNNNNNGG 5 cut(s) 842, 872, 1427, 1799, 1896
AflIII ACRYGT 1 cut(s) 559
AhlI ACTAGT 2 cut(s) 295, 1142
AjiI CACGTC 1 cut(s) 1845
AjnI CCWGG 9 cut(s) 176, 493, 841, 865, 936, 1338, 1833, 2707, 2865
AjuI GAANNNNNNNTTGG 2 cut(s) 2836, 2868
AloI GAACNNNNNNTCC 2 cut(s) 370, 402
Alw21I GWGCWC 1 cut(s) 1286
Alw26I GTCTC 5 cut(s) 492, 2059, 2260, 2396, 2773
AlwI GGATC 8 cut(s) 165, 174, 724, 1163, 1264, 1330, 2189, 2765
AlwNI CAGNNNCTG 2 cut(s) 434, 2006
Ama87I CYCGRG 1 cut(s) 1110
Aor13HI TCCGGA 1 cut(s) 1227
AoxI GGCC 5 cut(s) 491, 742, 817, 2332, 2734
ApeKI GCWGC 7 cut(s) 134, 337, 394, 920, 1673, 1838, 2836
ApoI RAATTY 2 cut(s) 636, 1030
AseI ATTAAT 1 cut(s) 1527
Asp700I GAANNNNTTC 2 cut(s) 1890, 2719
Asp718I GGTACC 2 cut(s) 1952, 2109
AspLEI GCGC 3 cut(s) 309, 655, 1159
AsuHPI GGTGA 7 cut(s) 649, 855, 953, 1585, 2662, 2977, 3002
AsuNHI GCTAGC 1 cut(s) 703
AvaI CYCGRG 1 cut(s) 1110
AvaII GGWCC 8 cut(s) 543, 758, 1179, 1395, 1725, 2089, 2100, 2242
BanI GGYRCC 2 cut(s) 1952, 2109
BarI GAAGNNNNNNTAC 2 cut(s) 2551, 2583
BbsI GAAGAC 2 cut(s) 1697, 2566
Bbv12I GWGCWC 1 cut(s) 1286
BbvCI CCTCAGC 1 cut(s) 699
BbvI GCAGC 7 cut(s) 121, 349, 381, 907, 1660, 1850, 2848
BceAI ACGGC 2 cut(s) 757, 2677
BcgI CGANNNNNNTGC 2 cut(s) 2795, 2829
BciT130I CCWGG 9 cut(s) 178, 495, 843, 867, 938, 1340, 1835, 2709, 2867
BciVI GTATCC 1 cut(s) 2361
BclI TGATCA 1 cut(s) 2785
BcoDI GTCTC 5 cut(s) 492, 2059, 2260, 2396, 2773
BcuI ACTAGT 2 cut(s) 295, 1142
BfmI CTRYAG 3 cut(s) 129, 516, 1674
BfuAI ACCTGC 1 cut(s) 1406
BfuI GTATCC 1 cut(s) 2361
BglII AGATCT 2 cut(s) 2391, 2848
BisI GCNGC 9 cut(s) 135, 338, 351, 395, 921, 1674, 1839, 2369, 2837
BlpI GCTNAGC 1 cut(s) 1607
BlsI GCNGC 9 cut(s) 136, 339, 352, 396, 922, 1675, 1840, 2370, 2838
Bme1390I CCNGG 9 cut(s) 178, 495, 843, 867, 938, 1340, 1835, 2709, 2867
Bme18I GGWCC 8 cut(s) 543, 758, 1179, 1395, 1725, 2089, 2100, 2242
BmeT110I CYCGRG 1 cut(s) 1110
BmgBI CACGTC 1 cut(s) 1845
BmrFI CCNGG 9 cut(s) 178, 495, 843, 867, 938, 1340, 1835, 2709, 2867
BmtI GCTAGC 1 cut(s) 707
BpiI GAAGAC 2 cut(s) 1697, 2566
BplI GAGNNNNNCTC 4 cut(s) 263, 295, 1273, 1305
BpmI CTGGAG 2 cut(s) 429, 2909
Bpu10I CCTNAGC 3 cut(s) 47, 699, 814
Bpu1102I GCTNAGC 1 cut(s) 1607
BpuEI CTTGAG 2 cut(s) 1705, 2510
Bsa29I ATCGAT 2 cut(s) 1006, 2646
BsaI GGTCTC 2 cut(s) 2059, 2773
BsaWI WCCGGW 2 cut(s) 1227, 2068
BsaXI ACNNNNNCTCC 2 cut(s) 2703, 2733
Bsc4I CCNNNNNNNGG 5 cut(s) 842, 872, 1427, 1799, 1896
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 7 cut(s) 1258, 1484, 1728, 1928, 2111, 2221, 2892
Bse3DI GCAATG 3 cut(s) 877, 903, 2911
BseAI TCCGGA 1 cut(s) 1227
BseBI CCWGG 9 cut(s) 178, 495, 843, 867, 938, 1340, 1835, 2709, 2867
BseCI ATCGAT 2 cut(s) 1006, 2646
BseLI CCNNNNNNNGG 5 cut(s) 842, 872, 1427, 1799, 1896
BseMI GCAATG 3 cut(s) 877, 903, 2911
BseMII CTCAG 6 cut(s) 557, 713, 1212, 1862, 2466, 2784
BseNI ACTGG 7 cut(s) 1258, 1484, 1728, 1928, 2111, 2221, 2892
BseRI GAGGAG 1 cut(s) 2885
BseXI GCAGC 7 cut(s) 121, 349, 381, 907, 1660, 1850, 2848
BseYI CCCAGC 1 cut(s) 2319
BsgI GTGCAG 2 cut(s) 447, 2150
Bsh1236I CGCG 2 cut(s) 309, 653
BshFI GGCC 5 cut(s) 493, 744, 819, 2334, 2736
BshNI GGYRCC 2 cut(s) 1952, 2109
BshVI ATCGAT 2 cut(s) 1006, 2646
BsiHKAI GWGCWC 1 cut(s) 1286
BsiHKCI CYCGRG 1 cut(s) 1110
BsiSI CCGG 3 cut(s) 120, 1228, 2069
BslFI GGGAC 5 cut(s) 529, 1192, 1408, 2086, 2228
BslI CCNNNNNNNGG 5 cut(s) 842, 872, 1427, 1799, 1896
BsmAI GTCTC 5 cut(s) 492, 2059, 2260, 2396, 2773
BsmFI GGGAC 5 cut(s) 529, 1192, 1408, 2086, 2228
BsmI GAATGC 2 cut(s) 91, 2610
BsnI GGCC 5 cut(s) 493, 744, 819, 2334, 2736
Bso31I GGTCTC 2 cut(s) 2059, 2773
BsoBI CYCGRG 1 cut(s) 1110
Bsp1286I GDGCHC 1 cut(s) 1286
Bsp13I TCCGGA 1 cut(s) 1227
Bsp1407I TGTACA 1 cut(s) 556
Bsp1720I GCTNAGC 1 cut(s) 1607
BspACI CCGC 5 cut(s) 350, 1547, 1915, 2369, 2521
BspANI GGCC 5 cut(s) 493, 744, 819, 2334, 2736
BspCNI CTCAG 6 cut(s) 558, 712, 1211, 1863, 2465, 2783
BspDI ATCGAT 2 cut(s) 1006, 2646
BspEI TCCGGA 1 cut(s) 1227
BspFNI CGCG 2 cut(s) 309, 653
BspHI TCATGA 1 cut(s) 2251
BspMAI CTGCAG 1 cut(s) 1678
BspMI ACCTGC 1 cut(s) 1406
BspOI GCTAGC 1 cut(s) 707
BspPI GGATC 8 cut(s) 165, 174, 724, 1163, 1264, 1330, 2189, 2765
BspQI GCTCTTC 1 cut(s) 1860
BspT107I GGYRCC 2 cut(s) 1952, 2109
BspTNI GGTCTC 2 cut(s) 2059, 2773
BsrDI GCAATG 3 cut(s) 877, 903, 2911
BsrFI RCCGGY 1 cut(s) 119
BsrGI TGTACA 1 cut(s) 556
BsrI ACTGG 7 cut(s) 1258, 1484, 1728, 1928, 2111, 2221, 2892
BssAI RCCGGY 1 cut(s) 119
BssT1I CCWWGG 7 cut(s) 367, 547, 761, 1389, 1499, 1734, 1793
Bst2UI CCWGG 9 cut(s) 178, 495, 843, 867, 938, 1340, 1835, 2709, 2867
Bst6I CTCTTC 4 cut(s) 2, 1860, 2394, 2710
BstAPI GCANNNNNTGC 1 cut(s) 391
BstAUI TGTACA 1 cut(s) 556
BstC8I GCNNGC 9 cut(s) 91, 184, 466, 705, 1052, 1056, 1060, 1981, 2427
BstDSI CCRYGG 1 cut(s) 1569
BstEII GGTNACC 2 cut(s) 172, 362
BstENI CCTNNNNNAGG 1 cut(s) 840
BstFNI CGCG 2 cut(s) 309, 653
BstHHI GCGC 3 cut(s) 309, 655, 1159
BstMAI GTCTC 5 cut(s) 492, 2059, 2260, 2396, 2773
BstNI CCWGG 9 cut(s) 178, 495, 843, 867, 938, 1340, 1835, 2709, 2867
BstNSI RCATGY 4 cut(s) 227, 563, 1058, 3010
BstPI GGTNACC 2 cut(s) 172, 362
BstSCI CCNGG 9 cut(s) 176, 493, 841, 865, 936, 1338, 1833, 2707, 2865
BstSFI CTRYAG 3 cut(s) 129, 516, 1674
BstUI CGCG 2 cut(s) 309, 653
BstV1I GCAGC 7 cut(s) 121, 349, 381, 907, 1660, 1850, 2848
BstV2I GAAGAC 2 cut(s) 1697, 2566
BstX2I RGATCY 2 cut(s) 2391, 2848
BstXI CCANNNNNNTGG 1 cut(s) 1735
BstYI RGATCY 2 cut(s) 2391, 2848
Bsu15I ATCGAT 2 cut(s) 1006, 2646
BsuI GTATCC 1 cut(s) 2361
BsuRI GGCC 5 cut(s) 493, 744, 819, 2334, 2736
BsuTUI ATCGAT 2 cut(s) 1006, 2646
BtgI CCRYGG 1 cut(s) 1569
BtgZI GCGATG 2 cut(s) 324, 1446
BtrI CACGTC 1 cut(s) 1845
BtsI GCAGTG 2 cut(s) 1626, 2953
BveI ACCTGC 1 cut(s) 1406
Cac8I GCNNGC 9 cut(s) 91, 184, 466, 705, 1052, 1056, 1060, 1981, 2427
CaiI CAGNNNCTG 2 cut(s) 434, 2006
CciI TCATGA 1 cut(s) 2251
CfoI GCGC 3 cut(s) 309, 655, 1159
Cfr10I RCCGGY 1 cut(s) 119
ClaI ATCGAT 2 cut(s) 1006, 2646
CseI GACGC 4 cut(s) 114, 659, 786, 1510
CspCI CAANNNNNGTGG 2 cut(s) 735, 770
DraI TTTAAA 1 cut(s) 2040
EaeI YGGCCR 1 cut(s) 491
Eam1104I CTCTTC 4 cut(s) 2, 1860, 2394, 2710
EarI CTCTTC 4 cut(s) 2, 1860, 2394, 2710
Eco130I CCWWGG 7 cut(s) 367, 547, 761, 1389, 1499, 1734, 1793
Eco147I AGGCCT 2 cut(s) 2334, 2736
Eco31I GGTCTC 2 cut(s) 2059, 2773
Eco47I GGWCC 8 cut(s) 543, 758, 1179, 1395, 1725, 2089, 2100, 2242
Eco57I CTGAAG 5 cut(s) 1617, 1691, 1772, 1973, 2937
Eco88I CYCGRG 1 cut(s) 1110
Eco91I GGTNACC 2 cut(s) 172, 362
EcoNI CCTNNNNNAGG 1 cut(s) 840
EcoO109I RGGNCCY 6 cut(s) 543, 818, 1179, 1395, 2100, 2242
EcoO65I GGTNACC 2 cut(s) 172, 362
EcoRII CCWGG 9 cut(s) 176, 493, 841, 865, 936, 1338, 1833, 2707, 2865
EcoT14I CCWWGG 7 cut(s) 367, 547, 761, 1389, 1499, 1734, 1793
EcoT22I ATGCAT 1 cut(s) 1854
ErhI CCWWGG 7 cut(s) 367, 547, 761, 1389, 1499, 1734, 1793
FaqI GGGAC 5 cut(s) 529, 1192, 1408, 2086, 2228
FauI CCCGC 1 cut(s) 2528
FauNDI CATATG 1 cut(s) 2598
FbaI TGATCA 1 cut(s) 2785
FblI GTMKAC 2 cut(s) 80, 212
Fnu4HI GCNGC 9 cut(s) 135, 338, 351, 395, 921, 1674, 1839, 2369, 2837
Fsp4HI GCNGC 9 cut(s) 135, 338, 351, 395, 921, 1674, 1839, 2369, 2837
GlaI GCGC 3 cut(s) 308, 654, 1158
GluI GCNGC 9 cut(s) 135, 338, 351, 395, 921, 1674, 1839, 2369, 2837
GsaI CCCAGC 1 cut(s) 2323
GsuI CTGGAG 2 cut(s) 429, 2909
HaeIII GGCC 5 cut(s) 493, 744, 819, 2334, 2736
HapII CCGG 3 cut(s) 120, 1228, 2069
HgaI GACGC 4 cut(s) 114, 659, 786, 1510
HhaI GCGC 3 cut(s) 309, 655, 1159
Hin6I GCGC 3 cut(s) 307, 653, 1157
HinP1I GCGC 3 cut(s) 307, 653, 1157
HincII GTYRAC 4 cut(s) 81, 1219, 2913, 2938
HindII GTYRAC 4 cut(s) 81, 1219, 2913, 2938
HinfI GANTC 6 cut(s) 485, 902, 1813, 2027, 2648, 2704
HpaI GTTAAC 2 cut(s) 1219, 2913
HpaII CCGG 3 cut(s) 120, 1228, 2069
HphI GGTGA 7 cut(s) 649, 855, 953, 1585, 2662, 2977, 3002
Hpy166II GTNNAC 8 cut(s) 81, 213, 293, 911, 1219, 2619, 2913, 2938
Hpy188III TCNNGA 7 cut(s) 977, 1228, 1859, 2033, 2252, 2469, 2489
Hpy8I GTNNAC 8 cut(s) 81, 213, 293, 911, 1219, 2619, 2913, 2938
Hpy99I CGWCG 3 cut(s) 64, 85, 101
HpyCH4IV ACGT 3 cut(s) 1221, 1844, 2791
HpySE526I ACGT 3 cut(s) 1221, 1844, 2791
HspAI GCGC 3 cut(s) 307, 653, 1157
KflI GGGWCCC 2 cut(s) 1179, 2100
Kpn2I TCCGGA 1 cut(s) 1227
KpnI GGTACC 2 cut(s) 1956, 2113
Ksp22I TGATCA 1 cut(s) 2785
KspAI GTTAAC 2 cut(s) 1219, 2913
LguI GCTCTTC 1 cut(s) 1860
LmnI GCTCC 4 cut(s) 990, 1281, 2444, 2872
Lsp1109I GCAGC 7 cut(s) 121, 349, 381, 907, 1660, 1850, 2848
MaeII ACGT 3 cut(s) 1221, 1844, 2791
MfeI CAATTG 3 cut(s) 1377, 2571, 2751
MflI RGATCY 2 cut(s) 2391, 2848
MhlI GDGCHC 1 cut(s) 1286
MlyI GAGTC 3 cut(s) 494, 911, 1822
MmeI TCCRAC 2 cut(s) 807, 1417
Mph1103I ATGCAT 1 cut(s) 1854
MroI TCCGGA 1 cut(s) 1227
MroXI GAANNNNTTC 2 cut(s) 1890, 2719
MslI CAYNNNNRTG 2 cut(s) 1067, 1847
MspA1I CMGCKG 2 cut(s) 521, 2381
MspI CCGG 3 cut(s) 120, 1228, 2069
MspR9I CCNGG 9 cut(s) 178, 495, 843, 867, 938, 1340, 1835, 2709, 2867
MunI CAATTG 3 cut(s) 1377, 2571, 2751
Mva1269I GAATGC 2 cut(s) 91, 2610
MvaI CCWGG 9 cut(s) 178, 495, 843, 867, 938, 1340, 1835, 2709, 2867
MvnI CGCG 2 cut(s) 309, 653
NdeI CATATG 1 cut(s) 2598
NheI GCTAGC 1 cut(s) 703
NmeAIII GCCGAG 2 cut(s) 469, 2953
NmuCI GTSAC 4 cut(s) 941, 1457, 2414, 2668
NsiI ATGCAT 1 cut(s) 1854
NspI RCATGY 4 cut(s) 227, 563, 1058, 3010
PaeI GCATGC 1 cut(s) 1058
PagI TCATGA 1 cut(s) 2251
PceI AGGCCT 2 cut(s) 2334, 2736
PciI ACATGT 1 cut(s) 559
PciSI GCTCTTC 1 cut(s) 1860
PctI GAATGC 2 cut(s) 91, 2610
PdmI GAANNNNTTC 2 cut(s) 1890, 2719
PfeI GAWTC 3 cut(s) 2027, 2648, 2704
PflMI CCANNNNNTGG 1 cut(s) 1896
PfoI TCCNGGA 3 cut(s) 1338, 2707, 2865
PkrI GCNGC 9 cut(s) 136, 339, 352, 396, 922, 1675, 1840, 2370, 2838
PleI GAGTC 3 cut(s) 493, 910, 1821
PpsI GAGTC 3 cut(s) 493, 910, 1821
PpuMI RGGWCCY 5 cut(s) 543, 1179, 1395, 2100, 2242
PscI ACATGT 1 cut(s) 559
PshBI ATTAAT 1 cut(s) 1527
Psp1406I AACGTT 1 cut(s) 1221
Psp5II RGGWCCY 5 cut(s) 543, 1179, 1395, 2100, 2242
Psp6I CCWGG 9 cut(s) 176, 493, 841, 865, 936, 1338, 1833, 2707, 2865
PspEI GGTNACC 2 cut(s) 172, 362
PspFI CCCAGC 1 cut(s) 2319
PspGI CCWGG 9 cut(s) 176, 493, 841, 865, 936, 1338, 1833, 2707, 2865
PspPPI RGGWCCY 5 cut(s) 543, 1179, 1395, 2100, 2242
PstI CTGCAG 1 cut(s) 1678
PstNI CAGNNNCTG 2 cut(s) 434, 2006
PsuI RGATCY 2 cut(s) 2391, 2848
PvuII CAGCTG 2 cut(s) 521, 2381
RseI CAYNNNNRTG 2 cut(s) 1067, 1847
SalI GTCGAC 1 cut(s) 79
SapI GCTCTTC 1 cut(s) 1860
SatI GCNGC 9 cut(s) 135, 338, 351, 395, 921, 1674, 1839, 2369, 2837
SchI GAGTC 3 cut(s) 494, 911, 1822
ScrFI CCNGG 9 cut(s) 178, 495, 843, 867, 938, 1340, 1835, 2709, 2867
SduI GDGCHC 1 cut(s) 1286
SfcI CTRYAG 3 cut(s) 129, 516, 1674
SinI GGWCC 8 cut(s) 543, 758, 1179, 1395, 1725, 2089, 2100, 2242
SmiI ATTTAAAT 1 cut(s) 2040
SmiMI CAYNNNNRTG 2 cut(s) 1067, 1847
SmlI CTYRAG 2 cut(s) 1720, 2489
SmoI CTYRAG 2 cut(s) 1720, 2489
SpeI ACTAGT 2 cut(s) 295, 1142
SphI GCATGC 1 cut(s) 1058
SseBI AGGCCT 2 cut(s) 2334, 2736
SsiI CCGC 5 cut(s) 350, 1547, 1915, 2369, 2521
SspI AATATT 1 cut(s) 1023
StuI AGGCCT 2 cut(s) 2334, 2736
StyD4I CCNGG 9 cut(s) 176, 493, 841, 865, 936, 1338, 1833, 2707, 2865
StyI CCWWGG 7 cut(s) 367, 547, 761, 1389, 1499, 1734, 1793
SwaI ATTTAAAT 1 cut(s) 2040
TaiI ACGT 3 cut(s) 1224, 1847, 2794
TaqII GACCGA 1 cut(s) 564
TatI WGTACW 3 cut(s) 556, 1587, 2618
TauI GCSGC 2 cut(s) 353, 2371
TfiI GAWTC 3 cut(s) 2027, 2648, 2704
TseFI GTSAC 4 cut(s) 941, 1457, 2414, 2668
TseI GCWGC 7 cut(s) 134, 337, 394, 920, 1673, 1838, 2836
Tsp45I GTSAC 4 cut(s) 941, 1457, 2414, 2668
TspGWI ACGGA 3 cut(s) 1558, 2034, 2913
Van91I CCANNNNNTGG 1 cut(s) 1896
VpaK11BI GGWCC 8 cut(s) 543, 758, 1179, 1395, 1725, 2089, 2100, 2242
VspI ATTAAT 1 cut(s) 1527
XagI CCTNNNNNAGG 1 cut(s) 840
XapI RAATTY 2 cut(s) 636, 1030
XbaI TCTAGA 1 cut(s) 2032
XceI RCATGY 4 cut(s) 227, 563, 1058, 3010
XmiI GTMKAC 2 cut(s) 80, 212
XmnI GAANNNNTTC 2 cut(s) 1890, 2719
Zsp2I ATGCAT 1 cut(s) 1854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.