PAPA-1-like conserved region
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G47350 AT2G47350 |
| fragaria_vesca | FvH4_5g39030 |
| malus_domestica | MD00G1140600.v1.1 MD03G1292700.v1.1 |
| prunus_persica | Prupe.8G265700_v2.0.a1 |
| pyrus_communis | pycom03g23200 pycom11g27340 |
| rosa_chinensis | RchiOBHm_Chr7g0241001 |
| rosa_laevigata | RLG00000000605 |
| rosa_multiflora | Rmu_sc0003187.1_g000010 |
| rosa_roxburghii | Rroxscaffold_3G00219330 |
| rosa_rugosa | Rorug07G0341200 |
| rosa_samantha | Rh7AG496300 Rh7BG467600 Rh7CG513600 Rh7DG480800 |
| rosa_wichuraiana | Rw7G041920 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1180 |
| Acc36I | ACCTGC | 4 cut(s) | 62, 134, 1180, 1249 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 365 |
| AccII | CGCG | 1 cut(s) | 753 |
| AciI | CCGC | 5 cut(s) | 677, 1128, 1439, 1532, 1631 |
| AclWI | GGATC | 1 cut(s) | 44 |
| AcoI | YGGCCR | 1 cut(s) | 123 |
| AcsI | RAATTY | 3 cut(s) | 556, 606, 1305 |
| AcuI | CTGAAG | 2 cut(s) | 1094, 1244 |
| AfaI | GTAC | 6 cut(s) | 364, 445, 475, 688, 1444, 1546 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 272, 365, 696 |
| AflII | CTTAAG | 1 cut(s) | 1598 |
| AflIII | ACRYGT | 1 cut(s) | 440 |
| AgsI | TTSAA | 4 cut(s) | 90, 469, 1022, 1140 |
| AjnI | CCWGG | 4 cut(s) | 125, 1132, 1477, 1617 |
| AluBI | AGCT | 9 cut(s) | 282, 288, 421, 1018, 1049, 1143, 1232, 1506, 1582 |
| AluI | AGCT | 9 cut(s) | 282, 288, 421, 1018, 1049, 1143, 1232, 1506, 1582 |
| Alw21I | GWGCWC | 1 cut(s) | 284 |
| Alw26I | GTCTC | 5 cut(s) | 58, 206, 966, 1240, 1478 |
| AlwI | GGATC | 1 cut(s) | 44 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 1222, 1289 |
| AoxI | GGCC | 4 cut(s) | 123, 453, 1104, 1432 |
| ApaI | GGGCCC | 2 cut(s) | 1108, 1436 |
| ApeKI | GCWGC | 6 cut(s) | 140, 1216, 1238, 1271, 1385, 1503 |
| ApoI | RAATTY | 3 cut(s) | 556, 606, 1305 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 620, 720, 883 |
| AspLEI | GCGC | 1 cut(s) | 753 |
| AspS9I | GGNCC | 5 cut(s) | 1104, 1105, 1432, 1433, 1535 |
| AsuHPI | GGTGA | 1 cut(s) | 362 |
| AvaII | GGWCC | 1 cut(s) | 1535 |
| BaeGI | GKGCMC | 2 cut(s) | 1108, 1436 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1434, 1467 |
| BalI | TGGCCA | 1 cut(s) | 125 |
| BanII | GRGCYC | 3 cut(s) | 284, 1108, 1436 |
| BbsI | GAAGAC | 3 cut(s) | 126, 483, 1347 |
| Bbv12I | GWGCWC | 1 cut(s) | 284 |
| BbvCI | CCTCAGC | 2 cut(s) | 1233, 1290 |
| BbvI | GCAGC | 6 cut(s) | 127, 1225, 1228, 1258, 1372, 1515 |
| BccI | CCATC | 9 cut(s) | 377, 658, 755, 1004, 1057, 1061, 1186, 1423, 1546 |
| BceAI | ACGGC | 2 cut(s) | 548, 1644 |
| BciT130I | CCWGG | 4 cut(s) | 127, 1134, 1479, 1619 |
| BcoDI | GTCTC | 5 cut(s) | 58, 206, 966, 1240, 1478 |
| BfaI | CTAG | 4 cut(s) | 57, 525, 1182, 1275 |
| BfmI | CTRYAG | 5 cut(s) | 141, 834, 888, 1446, 1501 |
| BfrI | CTTAAG | 1 cut(s) | 1598 |
| BfuAI | ACCTGC | 4 cut(s) | 62, 134, 1180, 1249 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 748 |
| BglII | AGATCT | 1 cut(s) | 710 |
| BisI | GCNGC | 7 cut(s) | 141, 1128, 1217, 1239, 1272, 1386, 1504 |
| BlsI | GCNGC | 7 cut(s) | 142, 1129, 1218, 1240, 1273, 1387, 1505 |
| BmcAI | AGTACT | 1 cut(s) | 364 |
| Bme1390I | CCNGG | 4 cut(s) | 127, 1134, 1479, 1619 |
| Bme18I | GGWCC | 1 cut(s) | 1535 |
| BmgT120I | GGNCC | 5 cut(s) | 1104, 1105, 1432, 1433, 1535 |
| BmiI | GGNNCC | 3 cut(s) | 1106, 1434, 1536 |
| BmrFI | CCNGG | 4 cut(s) | 127, 1134, 1479, 1619 |
| BmrI | ACTGGG | 1 cut(s) | 375 |
| BmsI | GCATC | 4 cut(s) | 70, 319, 926, 1114 |
| BmuI | ACTGGG | 1 cut(s) | 375 |
| BoxI | GACNNNNGTC | 1 cut(s) | 1470 |
| BpiI | GAAGAC | 3 cut(s) | 126, 483, 1347 |
| BpmI | CTGGAG | 2 cut(s) | 827, 990 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1233, 1290 |
| BpuEI | CTTGAG | 3 cut(s) | 268, 407, 610 |
| Bsa29I | ATCGAT | 2 cut(s) | 6, 39 |
| BsaAI | YACGTR | 1 cut(s) | 443 |
| BsaBI | GATNNNNATC | 1 cut(s) | 715 |
| BsaI | GGTCTC | 2 cut(s) | 58, 1478 |
| BsaJI | CCNNGG | 5 cut(s) | 126, 530, 611, 1132, 1477 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 334, 364, 473, 503 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 272, 365, 696 |
| Bse118I | RCCGGY | 1 cut(s) | 911 |
| Bse1I | ACTGG | 1 cut(s) | 370 |
| Bse8I | GATNNNNATC | 1 cut(s) | 715 |
| BseBI | CCWGG | 4 cut(s) | 127, 1134, 1479, 1619 |
| BseCI | ATCGAT | 2 cut(s) | 6, 39 |
| BseDI | CCNNGG | 5 cut(s) | 126, 530, 611, 1132, 1477 |
| BseGI | GGATG | 5 cut(s) | 194, 304, 392, 793, 1072 |
| BseJI | GATNNNNATC | 1 cut(s) | 715 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 272, 365, 696 |
| BseMII | CTCAG | 4 cut(s) | 1224, 1256, 1281, 1529 |
| BseNI | ACTGG | 1 cut(s) | 370 |
| BseSI | GKGCMC | 2 cut(s) | 1108, 1436 |
| BseXI | GCAGC | 6 cut(s) | 127, 1225, 1228, 1258, 1372, 1515 |
| BsgI | GTGCAG | 1 cut(s) | 1158 |
| Bsh1236I | CGCG | 1 cut(s) | 753 |
| BshFI | GGCC | 4 cut(s) | 125, 455, 1106, 1434 |
| BshVI | ATCGAT | 2 cut(s) | 6, 39 |
| BsiHKAI | GWGCWC | 1 cut(s) | 284 |
| BsiSI | CCGG | 1 cut(s) | 912 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 272, 365, 696 |
| BsmAI | GTCTC | 5 cut(s) | 58, 206, 966, 1240, 1478 |
| BsmBI | CGTCTC | 1 cut(s) | 1240 |
| BsmI | GAATGC | 3 cut(s) | 73, 122, 1260 |
| BsnI | GGCC | 4 cut(s) | 125, 455, 1106, 1434 |
| Bso31I | GGTCTC | 2 cut(s) | 58, 1478 |
| Bsp120I | GGGCCC | 2 cut(s) | 1104, 1432 |
| Bsp1286I | GDGCHC | 3 cut(s) | 284, 1108, 1436 |
| Bsp143I | GATC | 5 cut(s) | 3, 7, 36, 40, 710 |
| Bsp19I | CCATGG | 1 cut(s) | 611 |
| BspACI | CCGC | 5 cut(s) | 677, 1128, 1439, 1532, 1631 |
| BspANI | GGCC | 4 cut(s) | 125, 455, 1106, 1434 |
| BspCNI | CTCAG | 4 cut(s) | 1225, 1255, 1282, 1528 |
| BspDI | ATCGAT | 2 cut(s) | 6, 39 |
| BspFNI | CGCG | 1 cut(s) | 753 |
| BspLI | GGNNCC | 3 cut(s) | 1106, 1434, 1536 |
| BspMAI | CTGCAG | 3 cut(s) | 145, 892, 1505 |
| BspMI | ACCTGC | 4 cut(s) | 62, 134, 1180, 1249 |
| BspPI | GGATC | 1 cut(s) | 44 |
| BspQI | GCTCTTC | 2 cut(s) | 272, 722 |
| BspTI | CTTAAG | 1 cut(s) | 1598 |
| BspTNI | GGTCTC | 2 cut(s) | 58, 1478 |
| BsrFI | RCCGGY | 1 cut(s) | 911 |
| BsrI | ACTGG | 1 cut(s) | 370 |
| BssAI | RCCGGY | 1 cut(s) | 911 |
| BssECI | CCNNGG | 5 cut(s) | 126, 530, 611, 1132, 1477 |
| BssMI | GATC | 5 cut(s) | 3, 7, 36, 40, 710 |
| BssT1I | CCWWGG | 1 cut(s) | 611 |
| Bst2UI | CCWGG | 4 cut(s) | 127, 1134, 1479, 1619 |
| Bst4CI | ACNGT | 3 cut(s) | 14, 838, 1426 |
| Bst6I | CTCTTC | 3 cut(s) | 272, 722, 777 |
| BstAFI | CTTAAG | 1 cut(s) | 1598 |
| BstBAI | YACGTR | 1 cut(s) | 443 |
| BstC8I | GCNNGC | 1 cut(s) | 734 |
| BstDEI | CTNAG | 6 cut(s) | 744, 1233, 1242, 1290, 1515, 1572 |
| BstDSI | CCRYGG | 2 cut(s) | 530, 611 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 694 |
| BstF5I | GGATG | 5 cut(s) | 194, 304, 392, 793, 1072 |
| BstFNI | CGCG | 1 cut(s) | 753 |
| BstHHI | GCGC | 1 cut(s) | 753 |
| BstKTI | GATC | 5 cut(s) | 6, 10, 39, 43, 713 |
| BstMAI | GTCTC | 5 cut(s) | 58, 206, 966, 1240, 1478 |
| BstMBI | GATC | 5 cut(s) | 3, 7, 36, 40, 710 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 748, 1238, 1391 |
| BstNI | CCWGG | 4 cut(s) | 127, 1134, 1479, 1619 |
| BstNSI | RCATGY | 1 cut(s) | 1647 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 1470 |
| BstSCI | CCNGG | 4 cut(s) | 125, 1132, 1477, 1617 |
| BstSFI | CTRYAG | 5 cut(s) | 141, 834, 888, 1446, 1501 |
| BstSLI | GKGCMC | 2 cut(s) | 1108, 1436 |
| BstUI | CGCG | 1 cut(s) | 753 |
| BstV1I | GCAGC | 6 cut(s) | 127, 1225, 1228, 1258, 1372, 1515 |
| BstV2I | GAAGAC | 3 cut(s) | 126, 483, 1347 |
| BstX2I | RGATCY | 1 cut(s) | 710 |
| BstYI | RGATCY | 1 cut(s) | 710 |
| Bsu15I | ATCGAT | 2 cut(s) | 6, 39 |
| BsuRI | GGCC | 4 cut(s) | 125, 455, 1106, 1434 |
| BsuTUI | ATCGAT | 2 cut(s) | 6, 39 |
| BtgI | CCRYGG | 2 cut(s) | 530, 611 |
| BtsCI | GGATG | 5 cut(s) | 194, 304, 392, 793, 1072 |
| BtsIMutI | CAGTG | 3 cut(s) | 10, 843, 975 |
| BveI | ACCTGC | 4 cut(s) | 62, 134, 1180, 1249 |
| Cac8I | GCNNGC | 1 cut(s) | 734 |
| CaiI | CAGNNNCTG | 2 cut(s) | 1222, 1289 |
| CfoI | GCGC | 1 cut(s) | 753 |
| Cfr10I | RCCGGY | 1 cut(s) | 911 |
| Cfr13I | GGNCC | 5 cut(s) | 1104, 1105, 1432, 1433, 1535 |
| ClaI | ATCGAT | 2 cut(s) | 6, 39 |
| CseI | GACGC | 2 cut(s) | 742, 1499 |
| Csp6I | GTAC | 6 cut(s) | 363, 444, 474, 687, 1443, 1545 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 412, 447 |
| CviAII | CATG | 4 cut(s) | 121, 612, 1468, 1644 |
| CviQI | GTAC | 6 cut(s) | 363, 444, 474, 687, 1443, 1545 |
| DdeI | CTNAG | 6 cut(s) | 744, 1233, 1242, 1290, 1515, 1572 |
| DpnI | GATC | 5 cut(s) | 5, 9, 38, 42, 712 |
| DpnII | GATC | 5 cut(s) | 3, 7, 36, 40, 710 |
| EaeI | YGGCCR | 1 cut(s) | 123 |
| Eam1104I | CTCTTC | 3 cut(s) | 272, 722, 777 |
| EarI | CTCTTC | 3 cut(s) | 272, 722, 777 |
| Ecl136II | GAGCTC | 1 cut(s) | 282 |
| Eco130I | CCWWGG | 1 cut(s) | 611 |
| Eco24I | GRGCYC | 3 cut(s) | 284, 1108, 1436 |
| Eco31I | GGTCTC | 2 cut(s) | 58, 1478 |
| Eco47I | GGWCC | 1 cut(s) | 1535 |
| Eco53kI | GAGCTC | 1 cut(s) | 282 |
| Eco57I | CTGAAG | 2 cut(s) | 1094, 1244 |
| EcoICRI | GAGCTC | 1 cut(s) | 282 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 694 |
| EcoO109I | RGGNCCY | 3 cut(s) | 1104, 1105, 1433 |
| EcoRI | GAATTC | 1 cut(s) | 606 |
| EcoRII | CCWGG | 4 cut(s) | 125, 1132, 1477, 1617 |
| EcoT14I | CCWWGG | 1 cut(s) | 611 |
| EcoT22I | ATGCAT | 2 cut(s) | 122, 334 |
| EcoT38I | GRGCYC | 3 cut(s) | 284, 1108, 1436 |
| ErhI | CCWWGG | 1 cut(s) | 611 |
| Esp3I | CGTCTC | 1 cut(s) | 1240 |
| FaeI | CATG | 4 cut(s) | 124, 615, 1471, 1647 |
| FaiI | YATR | 9 cut(s) | 122, 613, 843, 984, 1448, 1469, 1555, 1563, 1645 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 243, 275, 581, 613 |
| FatI | CATG | 4 cut(s) | 120, 611, 1467, 1643 |
| FauI | CCCGC | 3 cut(s) | 670, 1432, 1525 |
| Fnu4HI | GCNGC | 7 cut(s) | 141, 1128, 1217, 1239, 1272, 1386, 1504 |
| FokI | GGATG | 5 cut(s) | 201, 311, 399, 800, 1079 |
| FriOI | GRGCYC | 3 cut(s) | 284, 1108, 1436 |
| Fsp4HI | GCNGC | 7 cut(s) | 141, 1128, 1217, 1239, 1272, 1386, 1504 |
| FspBI | CTAG | 4 cut(s) | 57, 525, 1182, 1275 |
| GlaI | GCGC | 1 cut(s) | 752 |
| GluI | GCNGC | 7 cut(s) | 141, 1128, 1217, 1239, 1272, 1386, 1504 |
| GsuI | CTGGAG | 2 cut(s) | 827, 990 |
| HaeIII | GGCC | 4 cut(s) | 125, 455, 1106, 1434 |
| HapII | CCGG | 1 cut(s) | 912 |
| HgaI | GACGC | 2 cut(s) | 742, 1499 |
| HhaI | GCGC | 1 cut(s) | 753 |
| Hin1II | CATG | 4 cut(s) | 124, 615, 1471, 1647 |
| Hin6I | GCGC | 1 cut(s) | 751 |
| HinP1I | GCGC | 1 cut(s) | 751 |
| HincII | GTYRAC | 1 cut(s) | 1398 |
| HindII | GTYRAC | 1 cut(s) | 1398 |
| HindIII | AAGCTT | 3 cut(s) | 286, 1141, 1580 |
| HpaII | CCGG | 1 cut(s) | 912 |
| HphI | GGTGA | 1 cut(s) | 362 |
| Hpy166II | GTNNAC | 2 cut(s) | 1398, 1545 |
| Hpy188III | TCNNGA | 9 cut(s) | 525, 627, 693, 806, 951, 969, 1157, 1182, 1316 |
| Hpy8I | GTNNAC | 2 cut(s) | 1398, 1545 |
| HpyCH4III | ACNGT | 3 cut(s) | 14, 838, 1426 |
| HpyCH4IV | ACGT | 1 cut(s) | 442 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 748, 1238, 1391 |
| HpyF3I | CTNAG | 6 cut(s) | 744, 1233, 1242, 1290, 1515, 1572 |
| HpySE526I | ACGT | 1 cut(s) | 442 |
| Hsp92II | CATG | 4 cut(s) | 124, 615, 1471, 1647 |
| HspAI | GCGC | 1 cut(s) | 751 |
| Kzo9I | GATC | 5 cut(s) | 3, 7, 36, 40, 710 |
| LguI | GCTCTTC | 2 cut(s) | 272, 722 |
| LmnI | GCTCC | 3 cut(s) | 228, 1015, 1213 |
| Lsp1109I | GCAGC | 6 cut(s) | 127, 1225, 1228, 1258, 1372, 1515 |
| LweI | GCATC | 4 cut(s) | 70, 319, 926, 1114 |
| MaeI | CTAG | 4 cut(s) | 57, 525, 1182, 1275 |
| MaeII | ACGT | 1 cut(s) | 442 |
| MaeIII | GTNAC | 2 cut(s) | 436, 1450 |
| MalI | GATC | 5 cut(s) | 5, 9, 38, 42, 712 |
| MboI | GATC | 5 cut(s) | 3, 7, 36, 40, 710 |
| MflI | RGATCY | 1 cut(s) | 710 |
| MhlI | GDGCHC | 3 cut(s) | 284, 1108, 1436 |
| MlsI | TGGCCA | 1 cut(s) | 125 |
| MluNI | TGGCCA | 1 cut(s) | 125 |
| MlyI | GAGTC | 2 cut(s) | 323, 1078 |
| MmeI | TCCRAC | 2 cut(s) | 906, 921 |
| Mox20I | TGGCCA | 1 cut(s) | 125 |
| Mph1103I | ATGCAT | 2 cut(s) | 122, 334 |
| MroXI | GAANNNNTTC | 3 cut(s) | 620, 720, 883 |
| MscI | TGGCCA | 1 cut(s) | 125 |
| Msp20I | TGGCCA | 1 cut(s) | 125 |
| MspA1I | CMGCKG | 1 cut(s) | 677 |
| MspCI | CTTAAG | 1 cut(s) | 1598 |
| MspI | CCGG | 1 cut(s) | 912 |
| MspR9I | CCNGG | 4 cut(s) | 127, 1134, 1479, 1619 |
| Mva1269I | GAATGC | 3 cut(s) | 73, 122, 1260 |
| MvaI | CCWGG | 4 cut(s) | 127, 1134, 1479, 1619 |
| MvnI | CGCG | 1 cut(s) | 753 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 748, 1238, 1391 |
| NcoI | CCATGG | 1 cut(s) | 611 |
| NdeII | GATC | 5 cut(s) | 3, 7, 36, 40, 710 |
| NlaIII | CATG | 4 cut(s) | 124, 615, 1471, 1647 |
| NlaIV | GGNNCC | 3 cut(s) | 1106, 1434, 1536 |
| NmuCI | GTSAC | 2 cut(s) | 436, 1450 |
| NsiI | ATGCAT | 2 cut(s) | 122, 334 |
| NspI | RCATGY | 1 cut(s) | 1647 |
| PaqCI | CACCTGC | 1 cut(s) | 1180 |
| PciSI | GCTCTTC | 2 cut(s) | 272, 722 |
| PctI | GAATGC | 3 cut(s) | 73, 122, 1260 |
| PdmI | GAANNNNTTC | 3 cut(s) | 620, 720, 883 |
| PfeI | GAWTC | 8 cut(s) | 716, 796, 860, 998, 1055, 1280, 1319, 1568 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 365 |
| PfoI | TCCNGGA | 1 cut(s) | 1617 |
| PkrI | GCNGC | 7 cut(s) | 142, 1129, 1218, 1240, 1273, 1387, 1505 |
| PleI | GAGTC | 2 cut(s) | 322, 1078 |
| PpsI | GAGTC | 2 cut(s) | 322, 1078 |
| Ppu21I | YACGTR | 1 cut(s) | 443 |
| PshAI | GACNNNNGTC | 1 cut(s) | 1470 |
| Psp124BI | GAGCTC | 1 cut(s) | 284 |
| Psp6I | CCWGG | 4 cut(s) | 125, 1132, 1477, 1617 |
| PspGI | CCWGG | 4 cut(s) | 125, 1132, 1477, 1617 |
| PspN4I | GGNNCC | 3 cut(s) | 1106, 1434, 1536 |
| PspOMI | GGGCCC | 2 cut(s) | 1104, 1432 |
| PspPI | GGNCC | 5 cut(s) | 1104, 1105, 1432, 1433, 1535 |
| PstI | CTGCAG | 3 cut(s) | 145, 892, 1505 |
| PstNI | CAGNNNCTG | 2 cut(s) | 1222, 1289 |
| PsuI | RGATCY | 1 cut(s) | 710 |
| RsaI | GTAC | 6 cut(s) | 364, 445, 475, 688, 1444, 1546 |
| RsaNI | GTAC | 6 cut(s) | 363, 444, 474, 687, 1443, 1545 |
| SacI | GAGCTC | 1 cut(s) | 284 |
| SapI | GCTCTTC | 2 cut(s) | 272, 722 |
| SatI | GCNGC | 7 cut(s) | 141, 1128, 1217, 1239, 1272, 1386, 1504 |
| Sau3AI | GATC | 5 cut(s) | 3, 7, 36, 40, 710 |
| Sau96I | GGNCC | 5 cut(s) | 1104, 1105, 1432, 1433, 1535 |
| ScaI | AGTACT | 1 cut(s) | 364 |
| SchI | GAGTC | 2 cut(s) | 323, 1078 |
| ScrFI | CCNGG | 4 cut(s) | 127, 1134, 1479, 1619 |
| SduI | GDGCHC | 3 cut(s) | 284, 1108, 1436 |
| SfaNI | GCATC | 4 cut(s) | 70, 319, 926, 1114 |
| SfcI | CTRYAG | 5 cut(s) | 141, 834, 888, 1446, 1501 |
| SinI | GGWCC | 1 cut(s) | 1535 |
| SmlI | CTYRAG | 4 cut(s) | 283, 422, 625, 1598 |
| SmoI | CTYRAG | 4 cut(s) | 283, 422, 625, 1598 |
| SsiI | CCGC | 5 cut(s) | 677, 1128, 1439, 1532, 1631 |
| SspMI | CTAG | 4 cut(s) | 57, 525, 1182, 1275 |
| SstI | GAGCTC | 1 cut(s) | 284 |
| StyD4I | CCNGG | 4 cut(s) | 125, 1132, 1477, 1617 |
| StyI | CCWWGG | 1 cut(s) | 611 |
| TaaI | ACNGT | 3 cut(s) | 14, 838, 1426 |
| TaiI | ACGT | 1 cut(s) | 445 |
| TaqI | TCGA | 5 cut(s) | 6, 39, 508, 662, 950 |
| TaqII | GACCGA | 1 cut(s) | 1301 |
| TatI | WGTACW | 1 cut(s) | 362 |
| TauI | GCSGC | 1 cut(s) | 1130 |
| TfiI | GAWTC | 8 cut(s) | 716, 796, 860, 998, 1055, 1280, 1319, 1568 |
| TscAI | CASTG | 3 cut(s) | 17, 843, 982 |
| TseFI | GTSAC | 2 cut(s) | 436, 1450 |
| TseI | GCWGC | 6 cut(s) | 140, 1216, 1238, 1271, 1385, 1503 |
| Tsp45I | GTSAC | 2 cut(s) | 436, 1450 |
| TspDTI | ATGAA | 5 cut(s) | 129, 308, 792, 873, 990 |
| TspGWI | ACGGA | 2 cut(s) | 494, 1176 |
| TspRI | CASTG | 3 cut(s) | 17, 843, 982 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 365 |
| Vha464I | CTTAAG | 1 cut(s) | 1598 |
| VpaK11BI | GGWCC | 1 cut(s) | 1535 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 694 |
| XapI | RAATTY | 3 cut(s) | 556, 606, 1305 |
| XbaI | TCTAGA | 2 cut(s) | 524, 1181 |
| XceI | RCATGY | 1 cut(s) | 1647 |
| XmnI | GAANNNNTTC | 3 cut(s) | 620, 720, 883 |
| XspI | CTAG | 4 cut(s) | 57, 525, 1182, 1275 |
| ZrmI | AGTACT | 1 cut(s) | 364 |
| Zsp2I | ATGCAT | 2 cut(s) | 122, 334 |