pycom12g06390

Plays a central role in 2-thiolation of mcm(5)S(2)U at tRNA wobble positions of tRNA(Lys), tRNA(Glu) and tRNA(Gln). May act by forming a heterodimer with NCS6 CTU1 that ligates sulfur from thiocarboxylated URM1 onto the uridine of tRNAs at wobble position

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
6517650 .. 6521171
3522 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1392 bp
ATGGCGTGCAGTGCTTCAGGTTGCGAATCAAATTGCTACAAAACCCAACAAGAAGAAGATGAAGATGTCAAAGACAACAACAATTACAAATCAATTTCTACAAACACTAGAAACAACAACAGCAACAGTAATTTGTGCCTCAAGTGCAAGGCCAATCAACCCATCTCTTCCAACACCGACGGCGGCGGCGACGATGCGCGCTTCTGTGCCGATTGCTTCCGCGGCAATCTCTTCGGGAAGTTCAGGTTCGCTGTCACCTCCAACGCCATGATTTCTCCTACTGACAATGTCCTCGTTGCCTTCTCCGGTGGCCCTTCTTCCAGGGTTGCTTTGCAGTTTGTACATGAGATGCATAATAAAGCACAGAAGAATTTCGATGCAAGTAGGGATAGATCGTTGCCAGTTTTTGGGGTTGGAGTTGCATTTGTTGATGAGAGTTCTGTTTATTCTGTTCCGTCTGGTGAAGTAGAAAACGCAATTGAAGATATTAGATTGATCGTGGAAGACCTAGCTCCACCAACAAAAGAACTGCATGTTGTACCAATTGAAAGTGTATACTCTTCAGATTCTGGTGATGGAAGGGGTAGATTAAATCAGTTGTTAGAAGCTGTTCCAGATGCTACTGGGAAAGAAGATCTTTTGCTTCACATGCGGATGTTGGCATTGCAAAAGGTTGCCTCTGAAAAGGGATACAACAGACTAGTGCTCGGATCATGCATATCGAGGATCGCTTGCCATGTTATTACAGCCACTGTCAAGGGCCAAGGATATTCTTTACCAGCTGATATACAATATGTTGATGCAAGGTGGGAGATCCCAGTGTTACTTCCTCTTCGTGATTGTCTTGCACGAGAGCTGACCATGCTTTGCTGCCTTGATGGTCTAAAAACTGTGGAGTTGATGAGAAGTCCTAGTACTGGAATAAACGGCTTGGTCTCATCATTCGTGACACTTTTGCAGGAAGAAAATCCTTCTCGAGAGTGCACAATTGTGAGAACTGCTGGAAAGCTTATCCCATTTCATTTTAACGGAATTCAAGAGATAAATGACTCTAAGGTTTCTTTGGAAACTCGAAGGCGTCTGAAGAGATATAACGTTAAACCTAATGAATCTTTTTCCTCAGAGTCATTCTGCTTTATCTGCAATAGCCCACTCAGCCGATCTGACTTGCTAAGTTTGAAGAATTTTGAGGACCACAAAACAAGTTGTGTCTGCTGTTTAAGCTGCCAGTTTCAGATACTTCCTGAAGACCCCTCATCAATAAATCAATTTTTTACTCTTTTTCCTCAGCAGCTGGCTGCTCGCGCAAAGCATGACAATCTTGACCATAACAGTGTCCTCAGGGAACAAATACAAGATTGCTTGCTCTCAGAAGGTGAAGATGAGACTTGA

Protein Analysis

464

Amino Acids

51.2

Weight (kDa)

5.29

Isoelectric Point (pI)

53.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0013576)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 407
AccI GTMKAC 1 cut(s) 555
AccII CGCG 3 cut(s) 199, 222, 1305
AciI CCGC 5 cut(s) 183, 186, 220, 222, 652
AclI AACGTT 1 cut(s) 1095
AclWI GGATC 3 cut(s) 718, 734, 808
AcsI RAATTY 3 cut(s) 370, 1032, 1183
AcuI CTGAAG 3 cut(s) 546, 1103, 1266
AcyI GRCGYC 1 cut(s) 1078
AfaI GTAC 3 cut(s) 342, 540, 916
AfiI CCNNNNNNNGG 2 cut(s) 407, 917
AgsI TTSAA 4 cut(s) 482, 548, 1037, 1180
AhlI ACTAGT 1 cut(s) 700
AjnI CCWGG 1 cut(s) 320
AleI CACNNNNGTG 1 cut(s) 989
AluBI AGCT 7 cut(s) 512, 608, 782, 856, 1009, 1224, 1294
AluI AGCT 7 cut(s) 512, 608, 782, 856, 1009, 1224, 1294
Alw21I GWGCWC 2 cut(s) 708, 986
Alw26I GTCTC 2 cut(s) 940, 1379
Alw44I GTGCAC 1 cut(s) 982
AlwI GGATC 3 cut(s) 718, 734, 808
AlwNI CAGNNNCTG 3 cut(s) 569, 752, 1294
Ama87I CYCGRG 1 cut(s) 975
AoxI GGCC 3 cut(s) 150, 310, 760
ApaLI GTGCAC 1 cut(s) 982
ApeKI GCWGC 4 cut(s) 870, 1224, 1291, 1298
ApoI RAATTY 3 cut(s) 370, 1032, 1183
Asp700I GAANNNNTTC 2 cut(s) 371, 609
AspLEI GCGC 3 cut(s) 199, 201, 1307
AspS9I GGNCC 3 cut(s) 311, 760, 1192
AsuHPI GGTGA 4 cut(s) 247, 473, 584, 1388
AvaI CYCGRG 1 cut(s) 975
AvaII GGWCC 1 cut(s) 1192
AxyI CCTNAGG 1 cut(s) 1340
BaeGI GKGCMC 1 cut(s) 986
BarI GAAGNNNNNNTAC 2 cut(s) 898, 930
BauI CACGAG 1 cut(s) 849
BbsI GAAGAC 2 cut(s) 510, 1254
Bbv12I GWGCWC 2 cut(s) 708, 986
BbvCI CCTCAGC 1 cut(s) 1287
BbvI GCAGC 4 cut(s) 857, 1211, 1285, 1303
BccI CCATC 3 cut(s) 170, 569, 872
BceAI ACGGC 2 cut(s) 196, 943
BcgI CGANNNNNNTGC 2 cut(s) 214, 248
BciT130I CCWGG 1 cut(s) 322
BciVI GTATCC 1 cut(s) 683
BcoDI GTCTC 2 cut(s) 940, 1379
BcuI ACTAGT 1 cut(s) 700
BfaI CTAG 4 cut(s) 108, 509, 701, 912
BfuI GTATCC 1 cut(s) 683
BglII AGATCT 1 cut(s) 634
BisI GCNGC 7 cut(s) 184, 187, 223, 871, 1225, 1292, 1299
BlsI GCNGC 7 cut(s) 185, 188, 224, 872, 1226, 1293, 1300
BmcAI AGTACT 1 cut(s) 916
Bme1390I CCNGG 1 cut(s) 322
Bme18I GGWCC 1 cut(s) 1192
BmeT110I CYCGRG 1 cut(s) 975
BmgT120I GGNCC 3 cut(s) 311, 760, 1192
BmrFI CCNGG 1 cut(s) 322
BmrI ACTGGG 2 cut(s) 633, 812
BmsI GCATC 5 cut(s) 184, 339, 367, 607, 790
BmuI ACTGGG 2 cut(s) 633, 812
BpiI GAAGAC 2 cut(s) 510, 1254
Bpu10I CCTNAGC 1 cut(s) 1287
BpuEI CTTGAG 1 cut(s) 125
BsaHI GRCGYC 1 cut(s) 1078
BsaI GGTCTC 1 cut(s) 940
BsaJI CCNNGG 3 cut(s) 220, 321, 763
BsaWI WCCGGW 1 cut(s) 305
Bsc4I CCNNNNNNNGG 2 cut(s) 407, 917
Bse1I ACTGG 5 cut(s) 401, 628, 818, 922, 1228
Bse21I CCTNAGG 1 cut(s) 1340
Bse3DI GCAATG 1 cut(s) 662
BseBI CCWGG 1 cut(s) 322
BseDI CCNNGG 3 cut(s) 220, 321, 763
BseGI GGATG 1 cut(s) 660
BseLI CCNNNNNNNGG 2 cut(s) 407, 917
BseMI GCAATG 1 cut(s) 662
BseMII CTCAG 5 cut(s) 1134, 1168, 1301, 1354, 1383
BseNI ACTGG 5 cut(s) 401, 628, 818, 922, 1228
BsePI GCGCGC 1 cut(s) 197
BseSI GKGCMC 1 cut(s) 986
BseXI GCAGC 4 cut(s) 857, 1211, 1285, 1303
BsgI GTGCAG 1 cut(s) 28
Bsh1236I CGCG 3 cut(s) 199, 222, 1305
BshFI GGCC 3 cut(s) 152, 312, 762
BsiHKAI GWGCWC 2 cut(s) 708, 986
BsiHKCI CYCGRG 1 cut(s) 975
BsiSI CCGG 1 cut(s) 306
BslI CCNNNNNNNGG 2 cut(s) 407, 917
BsmAI GTCTC 2 cut(s) 940, 1379
BsnI GGCC 3 cut(s) 152, 312, 762
Bso31I GGTCTC 1 cut(s) 940
BsoBI CYCGRG 1 cut(s) 975
Bsp1286I GDGCHC 2 cut(s) 708, 986
Bsp1407I TGTACA 1 cut(s) 340
Bsp143I GATC 7 cut(s) 392, 495, 634, 710, 726, 813, 1160
BspACI CCGC 5 cut(s) 183, 186, 220, 222, 652
BspANI GGCC 3 cut(s) 152, 312, 762
BspCNI CTCAG 5 cut(s) 1133, 1167, 1300, 1353, 1382
BspFNI CGCG 3 cut(s) 199, 222, 1305
BspPI GGATC 3 cut(s) 718, 734, 808
BspTNI GGTCTC 1 cut(s) 940
BsrDI GCAATG 1 cut(s) 662
BsrGI TGTACA 1 cut(s) 340
BsrI ACTGG 5 cut(s) 401, 628, 818, 922, 1228
BssECI CCNNGG 3 cut(s) 220, 321, 763
BssHII GCGCGC 1 cut(s) 197
BssMI GATC 7 cut(s) 392, 495, 634, 710, 726, 813, 1160
BssNAI GTATAC 1 cut(s) 556
BssNI GRCGYC 1 cut(s) 1078
BssSI CACGAG 1 cut(s) 849
BssT1I CCWWGG 1 cut(s) 763
Bst1107I GTATAC 1 cut(s) 556
Bst2BI CACGAG 1 cut(s) 849
Bst2UI CCWGG 1 cut(s) 322
Bst4CI ACNGT 4 cut(s) 128, 754, 892, 1334
Bst6I CTCTTC 5 cut(s) 172, 236, 565, 837, 1079
BstACI GRCGYC 1 cut(s) 1078
BstAUI TGTACA 1 cut(s) 340
BstC8I GCNNGC 6 cut(s) 7, 199, 733, 1296, 1303, 1364
BstDEI CTNAG 7 cut(s) 1053, 1120, 1154, 1172, 1287, 1340, 1369
BstDSI CCRYGG 1 cut(s) 220
BstF5I GGATG 1 cut(s) 660
BstFNI CGCG 3 cut(s) 199, 222, 1305
BstHHI GCGC 3 cut(s) 199, 201, 1307
BstKTI GATC 7 cut(s) 395, 498, 637, 713, 729, 816, 1163
BstMAI GTCTC 2 cut(s) 940, 1379
BstMBI GATC 7 cut(s) 392, 495, 634, 710, 726, 813, 1160
BstMWI GCNNNNNNNGC 9 cut(s) 11, 144, 222, 649, 862, 1140, 1155, 1221, 1304
BstNI CCWGG 1 cut(s) 322
BstNSI RCATGY 2 cut(s) 536, 652
BstSCI CCNGG 1 cut(s) 320
BstSLI GKGCMC 1 cut(s) 986
BstUI CGCG 3 cut(s) 199, 222, 1305
BstV1I GCAGC 4 cut(s) 857, 1211, 1285, 1303
BstV2I GAAGAC 2 cut(s) 510, 1254
BstX2I RGATCY 2 cut(s) 634, 813
BstYI RGATCY 2 cut(s) 634, 813
BstZ17I GTATAC 1 cut(s) 556
Bsu36I CCTNAGG 1 cut(s) 1340
BsuI GTATCC 1 cut(s) 683
BsuRI GGCC 3 cut(s) 152, 312, 762
BtgI CCRYGG 1 cut(s) 220
BtsCI GGATG 1 cut(s) 660
BtsI GCAGTG 1 cut(s) 16
BtsIMutI CAGTG 4 cut(s) 16, 750, 825, 1339
Cac8I GCNNGC 6 cut(s) 7, 199, 733, 1296, 1303, 1364
CaiI CAGNNNCTG 3 cut(s) 569, 752, 1294
CfoI GCGC 3 cut(s) 199, 201, 1307
Cfr13I GGNCC 3 cut(s) 311, 760, 1192
Cfr42I CCGCGG 1 cut(s) 223
CseI GACGC 1 cut(s) 1067
Csp6I GTAC 3 cut(s) 341, 539, 915
CviAII CATG 8 cut(s) 268, 344, 533, 649, 714, 737, 862, 1313
CviQI GTAC 3 cut(s) 341, 539, 915
DdeI CTNAG 7 cut(s) 1053, 1120, 1154, 1172, 1287, 1340, 1369
DpnI GATC 7 cut(s) 394, 497, 636, 712, 728, 815, 1162
DpnII GATC 7 cut(s) 392, 495, 634, 710, 726, 813, 1160
Eam1104I CTCTTC 5 cut(s) 172, 236, 565, 837, 1079
EarI CTCTTC 5 cut(s) 172, 236, 565, 837, 1079
Eco130I CCWWGG 1 cut(s) 763
Eco31I GGTCTC 1 cut(s) 940
Eco47I GGWCC 1 cut(s) 1192
Eco57I CTGAAG 3 cut(s) 546, 1103, 1266
Eco81I CCTNAGG 1 cut(s) 1340
Eco88I CYCGRG 1 cut(s) 975
EcoRI GAATTC 1 cut(s) 1032
EcoRII CCWGG 1 cut(s) 320
EcoT14I CCWWGG 1 cut(s) 763
EcoT22I ATGCAT 2 cut(s) 354, 719
ErhI CCWWGG 1 cut(s) 763
FaeI CATG 8 cut(s) 271, 347, 536, 652, 717, 740, 865, 1316
FalI AAGNNNNNCTT 2 cut(s) 621, 653
FatI CATG 8 cut(s) 267, 343, 532, 648, 713, 736, 861, 1312
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 7 cut(s) 184, 187, 223, 871, 1225, 1292, 1299
FokI GGATG 1 cut(s) 667
Fsp4HI GCNGC 7 cut(s) 184, 187, 223, 871, 1225, 1292, 1299
FspBI CTAG 4 cut(s) 108, 509, 701, 912
GlaI GCGC 3 cut(s) 198, 200, 1306
GluI GCNGC 7 cut(s) 184, 187, 223, 871, 1225, 1292, 1299
HaeIII GGCC 3 cut(s) 152, 312, 762
HapII CCGG 1 cut(s) 306
HgaI GACGC 1 cut(s) 1067
HhaI GCGC 3 cut(s) 199, 201, 1307
Hin1I GRCGYC 1 cut(s) 1078
Hin1II CATG 8 cut(s) 271, 347, 536, 652, 717, 740, 865, 1316
Hin6I GCGC 3 cut(s) 197, 199, 1305
HinP1I GCGC 3 cut(s) 197, 199, 1305
HindIII AAGCTT 1 cut(s) 1007
HinfI GANTC 5 cut(s) 26, 566, 1049, 1109, 1124
HpaII CCGG 1 cut(s) 306
HphI GGTGA 4 cut(s) 247, 473, 584, 1388
Hpy166II GTNNAC 2 cut(s) 556, 984
Hpy188I TCNGA 8 cut(s) 565, 682, 710, 1083, 1123, 1165, 1236, 1372
Hpy188III TCNNGA 9 cut(s) 235, 614, 836, 946, 975, 977, 1037, 1244, 1322
Hpy8I GTNNAC 2 cut(s) 556, 984
Hpy99I CGWCG 2 cut(s) 182, 194
HpyAV CCTTC 6 cut(s) 310, 324, 573, 981, 1068, 1367
HpyCH4III ACNGT 4 cut(s) 128, 754, 892, 1334
HpyCH4IV ACGT 1 cut(s) 1095
HpyF10VI GCNNNNNNNGC 9 cut(s) 11, 144, 222, 649, 862, 1140, 1155, 1221, 1304
HpyF3I CTNAG 7 cut(s) 1053, 1120, 1154, 1172, 1287, 1340, 1369
HpySE526I ACGT 1 cut(s) 1095
Hsp92I GRCGYC 1 cut(s) 1078
Hsp92II CATG 8 cut(s) 271, 347, 536, 652, 717, 740, 865, 1316
HspAI GCGC 3 cut(s) 197, 199, 1305
KspI CCGCGG 1 cut(s) 223
Kzo9I GATC 7 cut(s) 392, 495, 634, 710, 726, 813, 1160
LmnI GCTCC 1 cut(s) 517
Lsp1109I GCAGC 4 cut(s) 857, 1211, 1285, 1303
LweI GCATC 5 cut(s) 184, 339, 367, 607, 790
MaeI CTAG 4 cut(s) 108, 509, 701, 912
MaeII ACGT 1 cut(s) 1095
MaeIII GTNAC 3 cut(s) 253, 822, 946
MalI GATC 7 cut(s) 394, 497, 636, 712, 728, 815, 1162
MboI GATC 7 cut(s) 392, 495, 634, 710, 726, 813, 1160
MfeI CAATTG 3 cut(s) 477, 543, 987
MflI RGATCY 2 cut(s) 634, 813
MhlI GDGCHC 2 cut(s) 708, 986
MlyI GAGTC 2 cut(s) 1043, 1133
MmeI TCCRAC 3 cut(s) 195, 285, 394
Mph1103I ATGCAT 2 cut(s) 354, 719
MroXI GAANNNNTTC 2 cut(s) 371, 609
MseI TTAA 4 cut(s) 590, 1026, 1098, 1220
MslI CAYNNNNRTG 3 cut(s) 653, 989, 1332
MspA1I CMGCKG 3 cut(s) 222, 782, 1294
MspI CCGG 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 322
MunI CAATTG 3 cut(s) 477, 543, 987
MvaI CCWGG 1 cut(s) 322
MvnI CGCG 3 cut(s) 199, 222, 1305
MwoI GCNNNNNNNGC 9 cut(s) 11, 144, 222, 649, 862, 1140, 1155, 1221, 1304
NdeII GATC 7 cut(s) 392, 495, 634, 710, 726, 813, 1160
NlaIII CATG 8 cut(s) 271, 347, 536, 652, 717, 740, 865, 1316
NmuCI GTSAC 2 cut(s) 253, 946
NsiI ATGCAT 2 cut(s) 354, 719
NspI RCATGY 2 cut(s) 536, 652
OliI CACNNNNGTG 1 cut(s) 989
PaeR7I CTCGAG 1 cut(s) 975
PauI GCGCGC 1 cut(s) 197
PcsI WCGNNNNNNNCGW 1 cut(s) 186
PdmI GAANNNNTTC 2 cut(s) 371, 609
PfeI GAWTC 3 cut(s) 26, 566, 1109
PflFI GACNNNGTC 1 cut(s) 287
PflMI CCANNNNNTGG 1 cut(s) 407
PkrI GCNGC 7 cut(s) 185, 188, 224, 872, 1226, 1293, 1300
PleI GAGTC 2 cut(s) 1043, 1132
PpsI GAGTC 2 cut(s) 1043, 1132
Psp1406I AACGTT 1 cut(s) 1095
Psp6I CCWGG 1 cut(s) 320
PspGI CCWGG 1 cut(s) 320
PspPI GGNCC 3 cut(s) 311, 760, 1192
PstNI CAGNNNCTG 3 cut(s) 569, 752, 1294
PsuI RGATCY 2 cut(s) 634, 813
PsyI GACNNNGTC 1 cut(s) 287
PteI GCGCGC 1 cut(s) 197
PvuII CAGCTG 2 cut(s) 782, 1294
RsaI GTAC 3 cut(s) 342, 540, 916
RsaNI GTAC 3 cut(s) 341, 539, 915
RseI CAYNNNNRTG 3 cut(s) 653, 989, 1332
SacII CCGCGG 1 cut(s) 223
SaqAI TTAA 4 cut(s) 590, 1026, 1098, 1220
SatI GCNGC 7 cut(s) 184, 187, 223, 871, 1225, 1292, 1299
Sau3AI GATC 7 cut(s) 392, 495, 634, 710, 726, 813, 1160
Sau96I GGNCC 3 cut(s) 311, 760, 1192
ScaI AGTACT 1 cut(s) 916
SchI GAGTC 2 cut(s) 1043, 1133
ScrFI CCNGG 1 cut(s) 322
SduI GDGCHC 2 cut(s) 708, 986
SfaNI GCATC 5 cut(s) 184, 339, 367, 607, 790
Sfr274I CTCGAG 1 cut(s) 975
Sfr303I CCGCGG 1 cut(s) 223
SgrBI CCGCGG 1 cut(s) 223
SinI GGWCC 1 cut(s) 1192
SlaI CTCGAG 1 cut(s) 975
SmiMI CAYNNNNRTG 3 cut(s) 653, 989, 1332
SmlI CTYRAG 2 cut(s) 140, 975
SmoI CTYRAG 2 cut(s) 140, 975
SpeI ACTAGT 1 cut(s) 700
SsiI CCGC 5 cut(s) 183, 186, 220, 222, 652
SspMI CTAG 4 cut(s) 108, 509, 701, 912
StyD4I CCNGG 1 cut(s) 320
StyI CCWWGG 1 cut(s) 763
TaaI ACNGT 4 cut(s) 128, 754, 892, 1334
TaiI ACGT 1 cut(s) 1098
TaqI TCGA 4 cut(s) 375, 722, 976, 1072
TatI WGTACW 2 cut(s) 340, 914
TauI GCSGC 3 cut(s) 186, 189, 225
TfiI GAWTC 3 cut(s) 26, 566, 1109
Tru1I TTAA 4 cut(s) 590, 1026, 1098, 1220
Tru9I TTAA 4 cut(s) 590, 1026, 1098, 1220
TscAI CASTG 4 cut(s) 16, 757, 825, 1339
TseFI GTSAC 2 cut(s) 253, 946
TseI GCWGC 4 cut(s) 870, 1224, 1291, 1298
Tsp45I GTSAC 2 cut(s) 253, 946
TspDTI ATGAA 3 cut(s) 75, 1010, 1122
TspGWI ACGGA 2 cut(s) 444, 1044
TspRI CASTG 4 cut(s) 16, 757, 825, 1339
Tth111I GACNNNGTC 1 cut(s) 287
Van91I CCANNNNNTGG 1 cut(s) 407
VneI GTGCAC 1 cut(s) 982
VpaK11BI GGWCC 1 cut(s) 1192
XapI RAATTY 3 cut(s) 370, 1032, 1183
XceI RCATGY 2 cut(s) 536, 652
XhoI CTCGAG 1 cut(s) 975
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 2 cut(s) 371, 609
XspI CTAG 4 cut(s) 108, 509, 701, 912
ZrmI AGTACT 1 cut(s) 916
Zsp2I ATGCAT 2 cut(s) 354, 719
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.