pycom12g09350

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0012262
Physical Location & Seq
Forward (+)
11259657 .. 11262684
3028 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1098 bp
ATGATGAGACGACAGGATACTAGTCTGCGGTCAGCATCTTCGCGCCGTGAAAATTGCCCGACAGAAAATCTCAACGCCAAGACCGTCGGCTGCATGTCCGGCATCTTCAACCTTTTCTCTAAACACCACTCTTCCCGCAAATTCCTCACTTTTGGGAAAAGGCAAGAGAGGAATGGGGTTGGTTCCTCTTCTACAAGATCAAAATCCTCGATAGCACTAATCAAAGGTTCCGCACCCGCCAAACTAGCTGAAACCAAACATGAAGACAAGTCCATTTATATTGGGAGATTCTCAAGCAATAACGTGCCAAGAAGCCCGACCCTGCCAGCAGAGATCCGGCGGTTTAGCTCCCTGGATTCGCTCGCTGAGAACTCCAGAACCCCACCTGCTCTAGTTGCTCGGCTGATGGGGTTGGAGCAGGCTCCGCAGATAATGTCAAAGATGCCAATGCAGGAGTCCATGTCCATCAACAAGAGGCAGCAGCTTCTGGGAGCACTAGAGAAATGTGATGAAGATTTGAAGGCCCTAAAGAAGATCATAGACAGTGTCCGGGCTGCTGAAACTCTCCGATCACCCACCATGGTGAAGAGAATGGAGGCCGCCGTTGATGACAATAAGAAACGGTTCTATGGTGCAAATTTTAAGTGTATGGAGCTTACTAGTGAGCAGCCGAGTCCGGTGTCTGTGCTTGACGAGTTCGCTCATTCGCCTTTCAGCAACCAGCACCACTACAGAAAACAAGTATTAAATTACGGACGAGCAGCGGCACAACCTCAACTAAGGAAGAGACCAGGAGAAGAGGACTTTTTGAATCCAATTATGATTGACAAAATCACAACGGAATCAGTACTTTATAAGAGCCACAACGTAGAAGCACCATCGACACCATTGTGGAATAGCAAAGCCATGGTAGAGAGTGTAGCGGAAGTGTGCAGGGACATTGCTTGGGGAGAGAAGAGAGAGATTGGACGAATAGGGCTGGCTTTGCAGGACCACATTTGCAAAGACTTGATTGAAGAGATGGTCAAAGATATGGGATCATATACTTGTGTGTATTCACTGCCCTTTGAGGTATGTAAGAGAAGACTACGCTTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

366

Amino Acids

41.21

Weight (kDa)

9.52

Isoelectric Point (pI)

72.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012262)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G56810
fragaria_vesca FvH4_1g29470
malus_domestica MD12G1111200.v1.1
prunus_persica Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1 Prupe.7G023900_v2.0.a1
pyrus_communis pycom12g09350
rosa_chinensis RchiOBHm_Chr3g0495051
rosa_laevigata RLG00000022648
rosa_multiflora Rmu_sc0000340.1_g000035 Rmu_sc0004664.1_g000002
rosa_roxburghii Rroxscaffold_6G00390810
rosa_rugosa Rorug03G0269600
rosa_samantha Rh3AG318600 Rh3BG353900 Rh3CG351400 Rh3DG353000
rosa_wichuraiana Rw3G027790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 855
AarI CACCTGC 1 cut(s) 394
Acc36I ACCTGC 1 cut(s) 394
AccII CGCG 1 cut(s) 43
AciI CCGC 9 cut(s) 28, 136, 231, 237, 340, 425, 600, 764, 923
AclWI GGATC 2 cut(s) 328, 1045
AcsI RAATTY 2 cut(s) 140, 637
AfaI GTAC 1 cut(s) 849
AgsI TTSAA 4 cut(s) 109, 520, 811, 1016
AhlI ACTAGT 2 cut(s) 20, 659
AjnI CCWGG 2 cut(s) 351, 790
AleI CACNNNNGTG 2 cut(s) 581, 889
AluBI AGCT 4 cut(s) 248, 348, 484, 655
AluI AGCT 4 cut(s) 248, 348, 484, 655
Alw21I GWGCWC 1 cut(s) 496
Alw26I GTCTC 1 cut(s) 781
AlwI GGATC 2 cut(s) 328, 1045
AlwNI CAGNNNCTG 1 cut(s) 487
AoxI GGCC 2 cut(s) 522, 597
ApeKI GCWGC 6 cut(s) 90, 478, 481, 554, 667, 761
ApoI RAATTY 2 cut(s) 140, 637
Asp700I GAANNNNTTC 1 cut(s) 623
AspLEI GCGC 1 cut(s) 45
AspS9I GGNCC 2 cut(s) 523, 991
AsuC2I CCSGG 1 cut(s) 551
AsuHPI GGTGA 2 cut(s) 564, 595
AvaII GGWCC 1 cut(s) 991
BbsI GAAGAC 2 cut(s) 270, 1090
Bbv12I GWGCWC 1 cut(s) 496
BbvI GCAGC 6 cut(s) 77, 490, 493, 541, 679, 773
BccI CCATC 4 cut(s) 400, 473, 886, 1015
BceAI ACGGC 2 cut(s) 30, 587
BciT130I CCWGG 2 cut(s) 353, 792
BciVI GTATCC 1 cut(s) 10
BcnI CCSGG 1 cut(s) 551
BcoDI GTCTC 1 cut(s) 781
BcuI ACTAGT 2 cut(s) 20, 659
BfaI CTAG 5 cut(s) 21, 245, 392, 497, 660
BfmI CTRYAG 1 cut(s) 730
BfuAI ACCTGC 1 cut(s) 394
BfuI GTATCC 1 cut(s) 10
BisI GCNGC 8 cut(s) 91, 479, 482, 555, 600, 668, 762, 765
BlsI GCNGC 8 cut(s) 92, 480, 483, 556, 601, 669, 763, 766
BmcAI AGTACT 1 cut(s) 849
Bme1390I CCNGG 3 cut(s) 353, 551, 792
Bme18I GGWCC 1 cut(s) 991
BmgT120I GGNCC 2 cut(s) 523, 991
BmiI GGNNCC 3 cut(s) 184, 229, 423
BmrFI CCNGG 3 cut(s) 353, 551, 792
BmsI GCATC 3 cut(s) 44, 111, 432
BpiI GAAGAC 2 cut(s) 270, 1090
BpmI CTGGAG 1 cut(s) 358
BpuEI CTTGAG 1 cut(s) 277
BpuMI CCSGG 1 cut(s) 551
BsaBI GATNNNNATC 1 cut(s) 202
BsaI GGTCTC 1 cut(s) 781
BsaJI CCNNGG 3 cut(s) 351, 579, 906
BsaWI WCCGGW 1 cut(s) 676
BsaXI ACNNNNNCTCC 2 cut(s) 446, 476
Bse3DI GCAATG 1 cut(s) 939
Bse8I GATNNNNATC 1 cut(s) 202
BseBI CCWGG 2 cut(s) 353, 792
BseDI CCNNGG 3 cut(s) 351, 579, 906
BseJI GATNNNNATC 1 cut(s) 202
BseMI GCAATG 1 cut(s) 939
BseMII CTCAG 1 cut(s) 357
BseXI GCAGC 6 cut(s) 77, 490, 493, 541, 679, 773
BsgI GTGCAG 1 cut(s) 952
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 524, 599
BsiHKAI GWGCWC 1 cut(s) 496
BsiSI CCGG 4 cut(s) 99, 337, 550, 677
BslFI GGGAC 1 cut(s) 950
BsmAI GTCTC 1 cut(s) 781
BsmFI GGGAC 1 cut(s) 950
BsnI GGCC 2 cut(s) 524, 599
Bso31I GGTCTC 1 cut(s) 781
Bsp1286I GDGCHC 1 cut(s) 496
Bsp143I GATC 5 cut(s) 197, 333, 534, 569, 1037
Bsp19I CCATGG 2 cut(s) 579, 906
BspACI CCGC 9 cut(s) 28, 136, 231, 237, 340, 425, 600, 764, 923
BspANI GGCC 2 cut(s) 524, 599
BspCNI CTCAG 1 cut(s) 358
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 3 cut(s) 184, 229, 423
BspMI ACCTGC 1 cut(s) 394
BspPI GGATC 2 cut(s) 328, 1045
BspTNI GGTCTC 1 cut(s) 781
BsrDI GCAATG 1 cut(s) 939
BssECI CCNNGG 3 cut(s) 351, 579, 906
BssMI GATC 5 cut(s) 197, 333, 534, 569, 1037
BssT1I CCWWGG 2 cut(s) 579, 906
Bst2UI CCWGG 2 cut(s) 353, 792
Bst4CI ACNGT 3 cut(s) 85, 545, 624
Bst6I CTCTTC 7 cut(s) 136, 193, 581, 779, 792, 950, 1011
BstC8I GCNNGC 4 cut(s) 327, 363, 420, 981
BstDEI CTNAG 2 cut(s) 366, 779
BstDSI CCRYGG 2 cut(s) 579, 906
BstFNI CGCG 1 cut(s) 43
BstHHI GCGC 1 cut(s) 45
BstKTI GATC 5 cut(s) 200, 336, 537, 572, 1040
BstMAI GTCTC 1 cut(s) 781
BstMBI GATC 5 cut(s) 197, 333, 534, 569, 1037
BstMWI GCNNNNNNNGC 5 cut(s) 99, 245, 395, 424, 985
BstNI CCWGG 2 cut(s) 353, 792
BstNSI RCATGY 1 cut(s) 97
BstSCI CCNGG 3 cut(s) 351, 549, 790
BstSFI CTRYAG 1 cut(s) 730
BstUI CGCG 1 cut(s) 43
BstV1I GCAGC 6 cut(s) 77, 490, 493, 541, 679, 773
BstV2I GAAGAC 2 cut(s) 270, 1090
BstX2I RGATCY 1 cut(s) 333
BstYI RGATCY 1 cut(s) 333
BsuI GTATCC 1 cut(s) 10
BsuRI GGCC 2 cut(s) 524, 599
BtgI CCRYGG 2 cut(s) 579, 906
BtsI GCAGTG 1 cut(s) 1058
BtsIMutI CAGTG 2 cut(s) 550, 1058
BveI ACCTGC 1 cut(s) 394
Cac8I GCNNGC 4 cut(s) 327, 363, 420, 981
CaiI CAGNNNCTG 1 cut(s) 487
CfoI GCGC 1 cut(s) 45
Cfr13I GGNCC 2 cut(s) 523, 991
Csp6I GTAC 1 cut(s) 848
CviAII CATG 5 cut(s) 94, 260, 460, 580, 907
CviQI GTAC 1 cut(s) 848
DdeI CTNAG 2 cut(s) 366, 779
DpnI GATC 5 cut(s) 199, 335, 536, 571, 1039
DpnII GATC 5 cut(s) 197, 333, 534, 569, 1037
Eam1104I CTCTTC 7 cut(s) 136, 193, 581, 779, 792, 950, 1011
EarI CTCTTC 7 cut(s) 136, 193, 581, 779, 792, 950, 1011
Eco130I CCWWGG 2 cut(s) 579, 906
Eco31I GGTCTC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 991
EcoO109I RGGNCCY 1 cut(s) 523
EcoRII CCWGG 2 cut(s) 351, 790
EcoT14I CCWWGG 2 cut(s) 579, 906
ErhI CCWWGG 2 cut(s) 579, 906
FaeI CATG 5 cut(s) 97, 263, 463, 583, 910
FaqI GGGAC 1 cut(s) 950
FatI CATG 5 cut(s) 93, 259, 459, 579, 906
FauI CCCGC 2 cut(s) 143, 244
Fnu4HI GCNGC 8 cut(s) 91, 479, 482, 555, 600, 668, 762, 765
Fsp4HI GCNGC 8 cut(s) 91, 479, 482, 555, 600, 668, 762, 765
FspBI CTAG 5 cut(s) 21, 245, 392, 497, 660
GlaI GCGC 1 cut(s) 44
GluI GCNGC 8 cut(s) 91, 479, 482, 555, 600, 668, 762, 765
GsuI CTGGAG 1 cut(s) 358
HaeIII GGCC 2 cut(s) 524, 599
HapII CCGG 4 cut(s) 99, 337, 550, 677
HhaI GCGC 1 cut(s) 45
Hin1II CATG 5 cut(s) 97, 263, 463, 583, 910
Hin6I GCGC 1 cut(s) 43
HinP1I GCGC 1 cut(s) 43
HinfI GANTC 6 cut(s) 288, 356, 455, 673, 811, 842
HpaII CCGG 4 cut(s) 99, 337, 550, 677
HphI GGTGA 2 cut(s) 564, 595
Hpy188I TCNGA 1 cut(s) 569
Hpy188III TCNNGA 1 cut(s) 375
Hpy99I CGWCG 1 cut(s) 89
HpyAV CCTTC 1 cut(s) 514
HpyCH4III ACNGT 3 cut(s) 85, 545, 624
HpyCH4IV ACGT 2 cut(s) 303, 867
HpyCH4V TGCA 6 cut(s) 93, 451, 635, 933, 988, 1002
HpyF10VI GCNNNNNNNGC 5 cut(s) 99, 245, 395, 424, 985
HpyF3I CTNAG 2 cut(s) 366, 779
HpySE526I ACGT 2 cut(s) 303, 867
Hsp92II CATG 5 cut(s) 97, 263, 463, 583, 910
HspAI GCGC 1 cut(s) 43
Kzo9I GATC 5 cut(s) 197, 333, 534, 569, 1037
LmnI GCTCC 5 cut(s) 353, 415, 427, 491, 652
Lsp1109I GCAGC 6 cut(s) 77, 490, 493, 541, 679, 773
LweI GCATC 3 cut(s) 44, 111, 432
MaeI CTAG 5 cut(s) 21, 245, 392, 497, 660
MaeII ACGT 2 cut(s) 303, 867
MalI GATC 5 cut(s) 199, 335, 536, 571, 1039
MboI GATC 5 cut(s) 197, 333, 534, 569, 1037
MflI RGATCY 1 cut(s) 333
MhlI GDGCHC 1 cut(s) 496
MluCI AATT 5 cut(s) 52, 140, 637, 748, 816
MlyI GAGTC 2 cut(s) 464, 682
MmeI TCCRAC 1 cut(s) 393
MnlI CCTC 9 cut(s) 155, 162, 196, 217, 468, 589, 783, 793, 1063
MroXI GAANNNNTTC 1 cut(s) 623
MseI TTAA 2 cut(s) 642, 746
MslI CAYNNNNRTG 2 cut(s) 581, 889
MspA1I CMGCKG 1 cut(s) 764
MspI CCGG 4 cut(s) 99, 337, 550, 677
MspR9I CCNGG 3 cut(s) 353, 551, 792
MvaI CCWGG 2 cut(s) 353, 792
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 5 cut(s) 99, 245, 395, 424, 985
NciI CCSGG 1 cut(s) 551
NcoI CCATGG 2 cut(s) 579, 906
NdeII GATC 5 cut(s) 197, 333, 534, 569, 1037
NlaIII CATG 5 cut(s) 97, 263, 463, 583, 910
NlaIV GGNNCC 3 cut(s) 184, 229, 423
NmeAIII GCCGAG 2 cut(s) 379, 696
NspI RCATGY 1 cut(s) 97
OliI CACNNNNGTG 2 cut(s) 581, 889
PaqCI CACCTGC 1 cut(s) 394
PcsI WCGNNNNNNNCGW 1 cut(s) 81
PdmI GAANNNNTTC 1 cut(s) 623
PfeI GAWTC 4 cut(s) 288, 356, 811, 842
PflFI GACNNNGTC 1 cut(s) 545
PkrI GCNGC 8 cut(s) 92, 480, 483, 556, 601, 669, 763, 766
PleI GAGTC 2 cut(s) 463, 681
PpsI GAGTC 2 cut(s) 463, 681
PsiI TTATAA 1 cut(s) 855
Psp6I CCWGG 2 cut(s) 351, 790
PspGI CCWGG 2 cut(s) 351, 790
PspN4I GGNNCC 3 cut(s) 184, 229, 423
PspPI GGNCC 2 cut(s) 523, 991
PstNI CAGNNNCTG 1 cut(s) 487
PsuI RGATCY 1 cut(s) 333
PsyI GACNNNGTC 1 cut(s) 545
RsaI GTAC 1 cut(s) 849
RsaNI GTAC 1 cut(s) 848
RseI CAYNNNNRTG 2 cut(s) 581, 889
SaqAI TTAA 2 cut(s) 642, 746
SatI GCNGC 8 cut(s) 91, 479, 482, 555, 600, 668, 762, 765
Sau3AI GATC 5 cut(s) 197, 333, 534, 569, 1037
Sau96I GGNCC 2 cut(s) 523, 991
ScaI AGTACT 1 cut(s) 849
SchI GAGTC 2 cut(s) 464, 682
ScrFI CCNGG 3 cut(s) 353, 551, 792
SduI GDGCHC 1 cut(s) 496
SfaNI GCATC 3 cut(s) 44, 111, 432
SfcI CTRYAG 1 cut(s) 730
SinI GGWCC 1 cut(s) 991
SmiMI CAYNNNNRTG 2 cut(s) 581, 889
SmlI CTYRAG 1 cut(s) 292
SmoI CTYRAG 1 cut(s) 292
SpeI ACTAGT 2 cut(s) 20, 659
Sse9I AATT 5 cut(s) 52, 140, 637, 748, 816
SsiI CCGC 9 cut(s) 28, 136, 231, 237, 340, 425, 600, 764, 923
SspMI CTAG 5 cut(s) 21, 245, 392, 497, 660
StyD4I CCNGG 3 cut(s) 351, 549, 790
StyI CCWWGG 2 cut(s) 579, 906
TaaI ACNGT 3 cut(s) 85, 545, 624
TaiI ACGT 2 cut(s) 306, 870
TaqI TCGA 2 cut(s) 209, 881
TasI AATT 5 cut(s) 52, 140, 637, 748, 816
TatI WGTACW 1 cut(s) 847
TauI GCSGC 2 cut(s) 602, 767
TfiI GAWTC 4 cut(s) 288, 356, 811, 842
Tru1I TTAA 2 cut(s) 642, 746
Tru9I TTAA 2 cut(s) 642, 746
TscAI CASTG 2 cut(s) 550, 1065
TseI GCWGC 6 cut(s) 90, 478, 481, 554, 667, 761
TspDTI ATGAA 2 cut(s) 276, 525
TspGWI ACGGA 2 cut(s) 768, 854
TspRI CASTG 2 cut(s) 550, 1065
Tth111I GACNNNGTC 1 cut(s) 545
VpaK11BI GGWCC 1 cut(s) 991
XapI RAATTY 2 cut(s) 140, 637
XceI RCATGY 1 cut(s) 97
XmnI GAANNNNTTC 1 cut(s) 623
XspI CTAG 5 cut(s) 21, 245, 392, 497, 660
ZrmI AGTACT 1 cut(s) 849
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.