Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0006095

Physical Location & Seq

Genomic Coordinates Forward (+)

11343203 .. 11344690

Gene Structure 1488 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 897 bp

ATGGATTGTCATGCTTCTTCTTATTTGCAGTTTGCAACTGATGATTTCTTCGTCCTTTTCCTTTCAAACTCTTCTTACAATTCTTTTGGTCATGTAACATTTCAGGCTACAAATGAAAATCTCCCACCAAATGTAATTAAGCAACTTGCGAAGGAATTGAAGAGTCTTGATGAATCCCCTCCTGAAGGCATTCAAGTTGGGCTTAACGATGATGATTTTTCAATCATATATGCTGATATTGAAGGGCCAGCTGGCACTCCTTATGAGAATGGTGTTTTCCGCATGAAGTTGTTATTGTCCAGGGACTTTCCGCACTCTCCTCCTAAAGGCTACTTCCTGACGAAGATTTTCCATCCAAACATTGCGACTAACGGTGAGATTTGTGTCAACACCTTGAAAAAGGATTGGAATCCAAGTCTTGGATTACGACATGTTCTGATTGTAGTTAGATGTCTATTGATTGAACCATTTCCAGAATCAGCGTTGAATGAACAGGCAGGCAAGATGCTCCTTGAAAATTATGAGGAGTATGCAAGACATGCAAGGCTTTATACTGGAATCCATGCTAAGCCAAAACACAAGTTTAAAACAGGAGCTATTTCAGAGTCGACAACTGCACTGAACGTTGATCAAACTAACACATTGGCGCTTAATGCTGATCAAAAGAACACAGCACCCGGTGCTGCTTTGCTGGTGATCTCTGCATCCCCATCACTACTGGCACCTAGTACAGTCACCACTAGAGGAAATGGTCAGGATCAGCCACCCGTTGTAGCTCCAATGGAGACGGGAGTAGGTGGGTCTGCTACTACGGTGAGGAAGGAAGGTGGATTGACAAAAGCACAGGCAGAAAAGAAGAAAATAGATGCGAGAAAGAAGAGTTTGAAGAGATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000209 GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030163 GO:0031625 GO:0032446 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044389 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko04120 map04120

Pfam Domains

Protein Families

UQ_con

Protein Analysis

299

Amino Acids

32.55

Weight (kDa)

7.73

Isoelectric Point (pI)

35.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UQ_con	PF00179	49 - 184	5.9e-39	Ubiquitin-conjugating enzyme

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006095)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G05080 AT5G05080 AT5G05080 AT5G05080
fragaria_vesca	FvH4_1g29560 FvH4_1g29560 FvH4_1g29560
malus_domestica	MD12G1099900.v1.1 MD14G1093100.v1.1
prunus_persica	Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1 Prupe.7G024400_v2.0.a1
pyrus_communis	pycom12g09370 pycom14g09040
rosa_chinensis	RchiOBHm_Chr3g0495201
rosa_laevigata	RLG00000022639
rosa_multiflora	Rmu_sc0002943.1_g000025
rosa_roxburghii	Rroxscaffold_6G00390700
rosa_rugosa	Rorug03G0270100 Rorug03G0270200 Rorug03G0270200 Rorug03G0270300 Rorug03G0270300
rosa_samantha	Rh3AG319600 Rh3CG351600 Rh3DG353700
rosa_wichuraiana	Rw3G027910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	721
AccB7I	CCANNNNNTGG	1 cut(s)	419
AccI	GTMKAC	1 cut(s)	608
AciI	CCGC	2 cut(s)	280, 311
AclI	AACGTT	1 cut(s)	624
AclWI	GGATC	1 cut(s)	765
AcuI	CTGAAG	1 cut(s)	204
AdeI	CACNNNGTG	1 cut(s)	680
AfaI	GTAC	1 cut(s)	730
AfiI	CCNNNNNNNGG	3 cut(s)	185, 326, 419
AflIII	ACRYGT	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	299
AluBI	AGCT	3 cut(s)	251, 596, 776
AluI	AGCT	3 cut(s)	251, 596, 776
Alw26I	GTCTC	1 cut(s)	779
AlwI	GGATC	1 cut(s)	765
AoxI	GGCC	1 cut(s)	245
ApeKI	GCWGC	1 cut(s)	683
Asp700I	GAANNNNTTC	3 cut(s)	189, 347, 468
AspLEI	GCGC	1 cut(s)	649
AspS9I	GGNCC	1 cut(s)	245
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	4 cut(s)	386, 706, 727, 826
BanI	GGYRCC	1 cut(s)	721
BbvI	GCAGC	1 cut(s)	670
BccI	CCATC	2 cut(s)	360, 718
BciT130I	CCWGG	1 cut(s)	301
BclI	TGATCA	2 cut(s)	628, 658
BcnI	CCSGG	1 cut(s)	678
BcoDI	GTCTC	1 cut(s)	779
BfaI	CTAG	2 cut(s)	726, 741
BfoI	RGCGCY	1 cut(s)	650
BisI	GCNGC	1 cut(s)	684
BlpI	GCTNAGC	1 cut(s)	567
BlsI	GCNGC	1 cut(s)	685
Bme1390I	CCNGG	2 cut(s)	301, 678
BmgT120I	GGNCC	1 cut(s)	245
BmiI	GGNNCC	1 cut(s)	723
BmrFI	CCNGG	2 cut(s)	301, 678
BmsI	GCATC	3 cut(s)	495, 713, 856
Bpu1102I	GCTNAGC	1 cut(s)	567
BpuMI	CCSGG	1 cut(s)	678
BsaBI	GATNNNNATC	1 cut(s)	408
BsaJI	CCNNGG	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	3 cut(s)	185, 326, 419
Bse1I	ACTGG	2 cut(s)	559, 723
Bse3DI	GCAATG	1 cut(s)	360
Bse8I	GATNNNNATC	1 cut(s)	408
BseBI	CCWGG	1 cut(s)	301
BseDI	CCNNGG	1 cut(s)	300
BseGI	GGATG	2 cut(s)	352, 704
BseJI	GATNNNNATC	1 cut(s)	408
BseLI	CCNNNNNNNGG	3 cut(s)	185, 326, 419
BseMI	GCAATG	1 cut(s)	360
BseNI	ACTGG	2 cut(s)	559, 723
BseRI	GAGGAG	2 cut(s)	309, 539
BseXI	GCAGC	1 cut(s)	670
BsgI	GTGCAG	1 cut(s)	600
BshFI	GGCC	1 cut(s)	247
BshNI	GGYRCC	1 cut(s)	721
BsiSI	CCGG	1 cut(s)	678
BslFI	GGGAC	1 cut(s)	317
BslI	CCNNNNNNNGG	3 cut(s)	185, 326, 419
BsmAI	GTCTC	1 cut(s)	779
BsmBI	CGTCTC	1 cut(s)	779
BsmFI	GGGAC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	189
BsnI	GGCC	1 cut(s)	247
Bsp143I	GATC	4 cut(s)	628, 658, 696, 757
Bsp1720I	GCTNAGC	1 cut(s)	567
BspACI	CCGC	2 cut(s)	280, 311
BspANI	GGCC	1 cut(s)	247
BspLI	GGNNCC	1 cut(s)	723
BspPI	GGATC	1 cut(s)	765
BspT107I	GGYRCC	1 cut(s)	721
BsrDI	GCAATG	1 cut(s)	360
BsrI	ACTGG	2 cut(s)	559, 723
BssECI	CCNNGG	1 cut(s)	300
BssMI	GATC	4 cut(s)	628, 658, 696, 757
Bst2UI	CCWGG	1 cut(s)	301
Bst4CI	ACNGT	3 cut(s)	374, 733, 814
Bst6I	CTCTTC	4 cut(s)	76, 155, 872, 881
BstAPI	GCANNNNNTGC	2 cut(s)	539, 680
BstC8I	GCNNGC	3 cut(s)	249, 253, 499
BstDEI	CTNAG	1 cut(s)	567
BstENI	CCTNNNNNAGG	2 cut(s)	183, 324
BstF5I	GGATG	2 cut(s)	352, 704
BstH2I	RGCGCY	1 cut(s)	650
BstHHI	GCGC	1 cut(s)	649
BstKTI	GATC	4 cut(s)	631, 661, 699, 760
BstMAI	GTCTC	1 cut(s)	779
BstMBI	GATC	4 cut(s)	628, 658, 696, 757
BstMWI	GCNNNNNNNGC	3 cut(s)	539, 653, 680
BstNI	CCWGG	1 cut(s)	301
BstNSI	RCATGY	2 cut(s)	434, 542
BstSCI	CCNGG	2 cut(s)	299, 676
BstV1I	GCAGC	1 cut(s)	670
BsuRI	GGCC	1 cut(s)	247
BtsCI	GGATG	2 cut(s)	352, 704
BtsIMutI	CAGTG	1 cut(s)	617
Cac8I	GCNNGC	3 cut(s)	249, 253, 499
CfoI	GCGC	1 cut(s)	649
Cfr13I	GGNCC	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	729
CviAII	CATG	6 cut(s)	11, 92, 283, 431, 539, 563
CviQI	GTAC	1 cut(s)	729
DdeI	CTNAG	1 cut(s)	567
DpnI	GATC	4 cut(s)	630, 660, 698, 759
DpnII	GATC	4 cut(s)	628, 658, 696, 757
DraI	TTTAAA	1 cut(s)	586
DraIII	CACNNNGTG	1 cut(s)	680
Eam1104I	CTCTTC	4 cut(s)	76, 155, 872, 881
EarI	CTCTTC	4 cut(s)	76, 155, 872, 881
Eco57I	CTGAAG	1 cut(s)	204
EcoNI	CCTNNNNNAGG	2 cut(s)	183, 324
EcoRII	CCWGG	1 cut(s)	299
Esp3I	CGTCTC	1 cut(s)	779
FaeI	CATG	6 cut(s)	14, 95, 286, 434, 542, 566
FalI	AAGNNNNNCTT	2 cut(s)	186, 218
FaqI	GGGAC	1 cut(s)	317
FatI	CATG	6 cut(s)	10, 91, 282, 430, 538, 562
FbaI	TGATCA	2 cut(s)	628, 658
FblI	GTMKAC	1 cut(s)	608
Fnu4HI	GCNGC	1 cut(s)	684
FokI	GGATG	2 cut(s)	339, 691
Fsp4HI	GCNGC	1 cut(s)	684
FspBI	CTAG	2 cut(s)	726, 741
GlaI	GCGC	1 cut(s)	648
GluI	GCNGC	1 cut(s)	684
HaeII	RGCGCY	1 cut(s)	650
HaeIII	GGCC	1 cut(s)	247
HapII	CCGG	1 cut(s)	678
HhaI	GCGC	1 cut(s)	649
Hin1II	CATG	6 cut(s)	14, 95, 286, 434, 542, 566
Hin6I	GCGC	1 cut(s)	647
HinP1I	GCGC	1 cut(s)	647
HincII	GTYRAC	2 cut(s)	388, 609
HindII	GTYRAC	2 cut(s)	388, 609
HinfI	GANTC	6 cut(s)	163, 173, 409, 476, 558, 605
HpaII	CCGG	1 cut(s)	678
HphI	GGTGA	4 cut(s)	386, 706, 727, 826
Hpy166II	GTNNAC	2 cut(s)	388, 609
Hpy188I	TCNGA	2 cut(s)	438, 604
Hpy188III	TCNNGA	5 cut(s)	167, 182, 337, 473, 755
Hpy8I	GTNNAC	2 cut(s)	388, 609
HpyAV	CCTTC	5 cut(s)	145, 179, 236, 814, 818
HpyCH4III	ACNGT	3 cut(s)	374, 733, 814
HpyCH4IV	ACGT	1 cut(s)	624
HpyCH4V	TGCA	6 cut(s)	28, 35, 533, 542, 617, 704
HpyF10VI	GCNNNNNNNGC	3 cut(s)	539, 653, 680
HpyF3I	CTNAG	1 cut(s)	567
HpySE526I	ACGT	1 cut(s)	624
Hsp92II	CATG	6 cut(s)	14, 95, 286, 434, 542, 566
HspAI	GCGC	1 cut(s)	647
Ksp22I	TGATCA	2 cut(s)	628, 658
Kzo9I	GATC	4 cut(s)	628, 658, 696, 757
LmnI	GCTCC	3 cut(s)	513, 593, 781
Lsp1109I	GCAGC	1 cut(s)	670
LweI	GCATC	3 cut(s)	495, 713, 856
MaeI	CTAG	2 cut(s)	726, 741
MaeII	ACGT	1 cut(s)	624
MaeIII	GTNAC	2 cut(s)	94, 733
MalI	GATC	4 cut(s)	630, 660, 698, 759
MboI	GATC	4 cut(s)	628, 658, 696, 757
MboII	GAAGA	7 cut(s)	9, 40, 63, 172, 355, 868, 889
MluCI	AATT	4 cut(s)	79, 135, 155, 517
MlyI	GAGTC	2 cut(s)	172, 614
MnlI	CCTC	5 cut(s)	189, 330, 517, 737, 810
MroXI	GAANNNNTTC	3 cut(s)	189, 347, 468
MseI	TTAA	4 cut(s)	138, 204, 585, 651
MspA1I	CMGCKG	1 cut(s)	251
MspI	CCGG	1 cut(s)	678
MspR9I	CCNGG	2 cut(s)	301, 678
Mva1269I	GAATGC	1 cut(s)	189
MvaI	CCWGG	1 cut(s)	301
MwoI	GCNNNNNNNGC	3 cut(s)	539, 653, 680
NciI	CCSGG	1 cut(s)	678
NdeII	GATC	4 cut(s)	628, 658, 696, 757
NlaIII	CATG	6 cut(s)	14, 95, 286, 434, 542, 566
NlaIV	GGNNCC	1 cut(s)	723
NmuCI	GTSAC	1 cut(s)	733
NspI	RCATGY	2 cut(s)	434, 542
PciI	ACATGT	1 cut(s)	430
PctI	GAATGC	1 cut(s)	189
PdmI	GAANNNNTTC	3 cut(s)	189, 347, 468
PfeI	GAWTC	4 cut(s)	173, 409, 476, 558
PflMI	CCANNNNNTGG	1 cut(s)	419
PkrI	GCNGC	1 cut(s)	685
PleI	GAGTC	2 cut(s)	171, 613
PpsI	GAGTC	2 cut(s)	171, 613
PscI	ACATGT	1 cut(s)	430
Psp1406I	AACGTT	1 cut(s)	624
Psp6I	CCWGG	1 cut(s)	299
PspGI	CCWGG	1 cut(s)	299
PspN4I	GGNNCC	1 cut(s)	723
PspPI	GGNCC	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	730
RsaNI	GTAC	1 cut(s)	729
SalI	GTCGAC	1 cut(s)	607
SaqAI	TTAA	4 cut(s)	138, 204, 585, 651
SatI	GCNGC	1 cut(s)	684
Sau3AI	GATC	4 cut(s)	628, 658, 696, 757
Sau96I	GGNCC	1 cut(s)	245
SchI	GAGTC	2 cut(s)	172, 614
ScrFI	CCNGG	2 cut(s)	301, 678
SetI	ASST	8 cut(s)	253, 395, 598, 627, 727, 778, 799, 829
SfaNI	GCATC	3 cut(s)	495, 713, 856
Sse9I	AATT	4 cut(s)	79, 135, 155, 517
SsiI	CCGC	2 cut(s)	280, 311
SspMI	CTAG	2 cut(s)	726, 741
StyD4I	CCNGG	2 cut(s)	299, 676
TaaI	ACNGT	3 cut(s)	374, 733, 814
TaiI	ACGT	1 cut(s)	627
TaqI	TCGA	1 cut(s)	608
TasI	AATT	4 cut(s)	79, 135, 155, 517
TatI	WGTACW	1 cut(s)	728
TfiI	GAWTC	4 cut(s)	173, 409, 476, 558
Tru1I	TTAA	4 cut(s)	138, 204, 585, 651
Tru9I	TTAA	4 cut(s)	138, 204, 585, 651
TscAI	CASTG	1 cut(s)	624
TseFI	GTSAC	1 cut(s)	733
TseI	GCWGC	1 cut(s)	683
Tsp45I	GTSAC	1 cut(s)	733
TspDTI	ATGAA	4 cut(s)	129, 186, 299, 504
TspRI	CASTG	1 cut(s)	624
Van91I	CCANNNNNTGG	1 cut(s)	419
XagI	CCTNNNNNAGG	2 cut(s)	183, 324
XceI	RCATGY	2 cut(s)	434, 542
XmiI	GTMKAC	1 cut(s)	608
XmnI	GAANNNNTTC	3 cut(s)	189, 347, 468
XspI	CTAG	2 cut(s)	726, 741

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.