pycom12g11880

The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
14309900 .. 14313070
3171 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g11880.7

Sequence Viewer

Length: 1563 bp
ATGGCGACTGAAGATGGAACCTTTGCTAAAAACGGTGGCGGCATTTTCACCAACGAAGCTGAGCCTTCAACCTACATGGATGGAGTTTCCACTGAGATAATTGAAGAAGCACCTCCTGGCCATCTGTGGAGACGACAGAACCTCGTCTTACAGATACCTTCAAGAACTCTTGAGGATGCCAAAGAGAATTTTGTGAGAATAAACATGCCCCCAACGCCGAGCCCCACTCCCAAAAGAGTAAATTTCTCCCCATTACCCAGCCCTAGTTTAGCTAAAATCAATGAGTCCCCAGGTCCCTCGTCGTCAAAAACTAAATCGACCACAAAAAGAAGCCTCCTTCCAAGACTAAGTTTCAAAAATTGGAACACTACTTCGGATATTGAGAAGGCTGCCGCTCGAGCACTAGGAGGCTTGCCTGCGGGGACACGTGAGAAGCCTTCAACTCCGAGGGCCTGGTCCTTTGCAATGCTTTTAACTCCCAGGACGAAAACCGGATCATCCTTGCCTGCAACTCCAATTGCTCACTCAAATCTAGAGTCTATGCATGGCAGGAACACAATTGATCTGAAAGCAGAGGCCCAACGACCTATTAGCCGCTCACGTTCAGTTCCTGCGATTAAGAAAGATGGAAGTATATATGCAGGCAGTGTCATTCGTGTAATTCCAACCACGCCACGAGTGGCTGAGAGGACTGTCACAACTACATCAAGCACATCCCCAATAAATGTCACTAATGGAAGTGATGATGGTGGTGAAGATATTGCTGAAGAAGAAGCTGTTTGTCGAATTTGCTTAGTTGAGCTGGGTGAAGATGCCGACACCCTCAAGATGGAATGCAGCTGTAAAGGCGACCTTGCTCTTGCCCACCAAAAATGTGCTGTAAAATGGTTCAGCATTAAGGGTAATAAAACATGCGATGTGTGCGGAGAAGATGTTCAGAACCTACCGGTCACACTTCTACGAATTCAAAATTCTCAGGCTGTTAATTTTCGAGCAAGTAGAGCACAGCAGGCTGAGGTTACTCAATATAGGGCTTGGCAGGATGTTCCCATCCTTGCCATAGTCAGCATGCTTGCTTACTTCTGTCTTCTGGAGCAGCTTCTGGTGGGGAAAATGGGATCACACGCAATCACTCTGTCTCTTCCTTTTTCCTGCATTTTGGGTCTTCTGGCATCCATGACATCGACCACCATGGTGAGAAGAAGATATGTCTGGATTTATGCAACTACACAGTTTGCACTGGTCGTTATTGCAGCACATCTACTTTATTCATTGATTCACATGCAGGCAGTTCTGGCTCTTCTCCTCGCCACCTTTTCAGGGTTCGGAATTACAATGTGTGGAAGCTCTATCATTGTTGAGGCTTTGAGATGGAGGGGAAGATGGCGTTCTCGGCAGTCAAATCAACAGCATGGTTCTCAGGAGGTGACACGACCGAATCAATCACCACAGAATACACAACAAACACAAACGAATCCCCAACAGCGGGAAAATGAACCTGAAGGTGCAGAACTTACTCATGGCCCTACCTCTGTATGCATGAATACCACCGCTGCATGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

521

Amino Acids

56.72

Weight (kDa)

8.95

Isoelectric Point (pI)

55.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 395, 597
AciI CCGC 7 cut(s) 39, 393, 419, 595, 924, 1486, 1551
AclWI GGATC 2 cut(s) 502, 1126
AcoI YGGCCR 1 cut(s) 118
AcsI RAATTY 5 cut(s) 187, 241, 786, 963, 970
AcuI CTGAAG 3 cut(s) 30, 786, 1521
AcvI CACGTG 1 cut(s) 428
AfiI CCNNNNNNNGG 4 cut(s) 829, 1320, 1485, 1486
AflIII ACRYGT 1 cut(s) 425
AgeI ACCGGT 1 cut(s) 946
AgsI TTSAA 6 cut(s) 69, 104, 162, 355, 441, 968
AjnI CCWGG 4 cut(s) 115, 289, 452, 479
AleI CACNNNNGTG 1 cut(s) 1193
AloI GAACNNNNNNTCC 2 cut(s) 918, 950
AluBI AGCT 7 cut(s) 59, 272, 776, 802, 840, 1099, 1347
AluI AGCT 7 cut(s) 59, 272, 776, 802, 840, 1099, 1347
Alw21I GWGCWC 2 cut(s) 403, 1006
Alw26I GTCTC 2 cut(s) 124, 1143
AlwI GGATC 2 cut(s) 502, 1126
AlwNI CAGNNNCTG 2 cut(s) 611, 1102
Ama87I CYCGRG 1 cut(s) 396
AoxI GGCC 4 cut(s) 118, 450, 576, 1522
ApeKI GCWGC 5 cut(s) 389, 837, 1096, 1253, 1553
ApoI RAATTY 5 cut(s) 187, 241, 786, 963, 970
ArsI GACNNNNNNTTYG 2 cut(s) 521, 553
AsiGI ACCGGT 1 cut(s) 946
Asp700I GAANNNNTTC 1 cut(s) 933
AspS9I GGNCC 5 cut(s) 293, 450, 456, 577, 1523
AsuHPI GGTGA 6 cut(s) 40, 764, 818, 1207, 1437, 1438
AvaI CYCGRG 1 cut(s) 396
AvaII GGWCC 2 cut(s) 293, 456
BalI TGGCCA 1 cut(s) 120
BanII GRGCYC 1 cut(s) 224
BauI CACGAG 1 cut(s) 675
BbrPI CACGTG 1 cut(s) 428
BbsI GAAGAC 2 cut(s) 1079, 1157
Bbv12I GWGCWC 2 cut(s) 403, 1006
BbvCI CCTCAGC 1 cut(s) 1014
BbvI GCAGC 5 cut(s) 376, 849, 1108, 1265, 1540
BccI CCATC 9 cut(s) 8, 74, 129, 620, 740, 823, 1058, 1365, 1377
BciT130I CCWGG 4 cut(s) 117, 291, 454, 481
BcoDI GTCTC 2 cut(s) 124, 1143
BfaI CTAG 3 cut(s) 264, 404, 533
BisI GCNGC 8 cut(s) 40, 390, 393, 595, 838, 1097, 1254, 1554
BlpI GCTNAGC 1 cut(s) 60
BlsI GCNGC 8 cut(s) 41, 391, 394, 596, 839, 1098, 1255, 1555
Bme1390I CCNGG 4 cut(s) 117, 291, 454, 481
Bme18I GGWCC 2 cut(s) 293, 456
BmeT110I CYCGRG 1 cut(s) 396
BmgT120I GGNCC 5 cut(s) 293, 450, 456, 577, 1523
BmiI GGNNCC 2 cut(s) 19, 295
BmrFI CCNGG 4 cut(s) 117, 291, 454, 481
BmsI GCATC 3 cut(s) 166, 802, 1181
BpiI GAAGAC 2 cut(s) 1079, 1157
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BpmI CTGGAG 1 cut(s) 1112
Bpu10I CCTNAGC 1 cut(s) 1014
Bpu1102I GCTNAGC 1 cut(s) 60
BpuEI CTTGAG 2 cut(s) 191, 809
BsaAI YACGTR 1 cut(s) 428
BsaJI CCNNGG 4 cut(s) 289, 446, 479, 1191
BsaWI WCCGGW 2 cut(s) 491, 946
BsaXI ACNNNNNCTCC 2 cut(s) 918, 948
Bsc4I CCNNNNNNNGG 4 cut(s) 829, 1320, 1485, 1486
Bse118I RCCGGY 1 cut(s) 946
Bse1I ACTGG 1 cut(s) 1245
Bse3DI GCAATG 1 cut(s) 471
BseBI CCWGG 4 cut(s) 117, 291, 454, 481
BseDI CCNNGG 4 cut(s) 289, 446, 479, 1191
BseGI GGATG 7 cut(s) 85, 181, 497, 713, 1048, 1050, 1172
BseLI CCNNNNNNNGG 4 cut(s) 829, 1320, 1485, 1486
BseMI GCAATG 1 cut(s) 471
BseMII CTCAG 6 cut(s) 51, 84, 675, 989, 1005, 1433
BseNI ACTGG 1 cut(s) 1245
BseRI GAGGAG 1 cut(s) 1295
BseXI GCAGC 5 cut(s) 376, 849, 1108, 1265, 1540
BseYI CCCAGC 2 cut(s) 257, 802
BsgI GTGCAG 1 cut(s) 1527
Bsh1285I CGRYCG 1 cut(s) 1436
BshFI GGCC 4 cut(s) 120, 452, 578, 1524
BshTI ACCGGT 1 cut(s) 946
BsiEI CGRYCG 1 cut(s) 1436
BsiHKAI GWGCWC 2 cut(s) 403, 1006
BsiHKCI CYCGRG 1 cut(s) 396
BsiSI CCGG 2 cut(s) 492, 947
BslFI GGGAC 3 cut(s) 271, 279, 436
BslI CCNNNNNNNGG 4 cut(s) 829, 1320, 1485, 1486
BsmAI GTCTC 2 cut(s) 124, 1143
BsmBI CGTCTC 1 cut(s) 124
BsmFI GGGAC 3 cut(s) 271, 279, 436
BsmI GAATGC 1 cut(s) 839
BsnI GGCC 4 cut(s) 120, 452, 578, 1524
BsoBI CYCGRG 1 cut(s) 396
Bsp1286I GDGCHC 3 cut(s) 224, 403, 1006
Bsp143I GATC 3 cut(s) 494, 562, 1118
Bsp1720I GCTNAGC 1 cut(s) 60
Bsp19I CCATGG 1 cut(s) 1191
BspACI CCGC 7 cut(s) 39, 393, 419, 595, 924, 1486, 1551
BspANI GGCC 4 cut(s) 120, 452, 578, 1524
BspCNI CTCAG 6 cut(s) 52, 85, 676, 988, 1006, 1432
BspLI GGNNCC 2 cut(s) 19, 295
BspPI GGATC 2 cut(s) 502, 1126
BspQI GCTCTTC 1 cut(s) 1305
BsrBI CCGCTC 2 cut(s) 395, 597
BsrDI GCAATG 1 cut(s) 471
BsrFI RCCGGY 1 cut(s) 946
BsrI ACTGG 1 cut(s) 1245
BssAI RCCGGY 1 cut(s) 946
BssECI CCNNGG 4 cut(s) 289, 446, 479, 1191
BssMI GATC 3 cut(s) 494, 562, 1118
BssSI CACGAG 1 cut(s) 675
BssT1I CCWWGG 1 cut(s) 1191
Bst2BI CACGAG 1 cut(s) 675
Bst2UI CCWGG 4 cut(s) 117, 291, 454, 481
Bst4CI ACNGT 3 cut(s) 35, 694, 1233
Bst6I CTCTTC 2 cut(s) 1146, 1305
BstBAI YACGTR 1 cut(s) 428
BstC8I GCNNGC 9 cut(s) 413, 417, 507, 643, 1011, 1070, 1074, 1287, 1558
BstDEI CTNAG 8 cut(s) 60, 93, 347, 684, 793, 975, 1014, 1419
BstDSI CCRYGG 1 cut(s) 1191
BstF5I GGATG 7 cut(s) 85, 181, 497, 713, 1048, 1050, 1172
BstKTI GATC 3 cut(s) 497, 565, 1121
BstMAI GTCTC 2 cut(s) 124, 1143
BstMBI GATC 3 cut(s) 494, 562, 1118
BstMCI CGRYCG 1 cut(s) 1436
BstMWI GCNNNNNNNGC 8 cut(s) 214, 398, 846, 921, 1001, 1010, 1295, 1393
BstNI CCWGG 4 cut(s) 117, 291, 454, 481
BstNSI RCATGY 5 cut(s) 208, 915, 1072, 1285, 1560
BstSCI CCNGG 4 cut(s) 115, 289, 452, 479
BstV1I GCAGC 5 cut(s) 376, 849, 1108, 1265, 1540
BstV2I GAAGAC 2 cut(s) 1079, 1157
BsuRI GGCC 4 cut(s) 120, 452, 578, 1524
BtgI CCRYGG 1 cut(s) 1191
BtgZI GCGATG 1 cut(s) 930
BtsCI GGATG 7 cut(s) 85, 181, 497, 713, 1048, 1050, 1172
BtsI GCAGTG 1 cut(s) 652
BtsIMutI CAGTG 3 cut(s) 90, 652, 1238
Cac8I GCNNGC 9 cut(s) 413, 417, 507, 643, 1011, 1070, 1074, 1287, 1558
CaiI CAGNNNCTG 2 cut(s) 611, 1102
Cfr10I RCCGGY 1 cut(s) 946
Cfr13I GGNCC 5 cut(s) 293, 450, 456, 577, 1523
CspAI ACCGGT 1 cut(s) 946
DdeI CTNAG 8 cut(s) 60, 93, 347, 684, 793, 975, 1014, 1419
DpnI GATC 3 cut(s) 496, 564, 1120
DpnII GATC 3 cut(s) 494, 562, 1118
EaeI YGGCCR 1 cut(s) 118
Eam1104I CTCTTC 2 cut(s) 1146, 1305
EarI CTCTTC 2 cut(s) 1146, 1305
Eco130I CCWWGG 1 cut(s) 1191
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 293, 456
Eco57I CTGAAG 3 cut(s) 30, 786, 1521
Eco72I CACGTG 1 cut(s) 428
Eco88I CYCGRG 1 cut(s) 396
EcoO109I RGGNCCY 2 cut(s) 293, 450
EcoRI GAATTC 1 cut(s) 963
EcoRII CCWGG 4 cut(s) 115, 289, 452, 479
EcoT14I CCWWGG 1 cut(s) 1191
EcoT22I ATGCAT 2 cut(s) 546, 1541
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 1 cut(s) 1191
Esp3I CGTCTC 1 cut(s) 124
FalI AAGNNNNNCTT 2 cut(s) 837, 869
FaqI GGGAC 3 cut(s) 271, 279, 436
FauI CCCGC 2 cut(s) 412, 1479
Fnu4HI GCNGC 8 cut(s) 40, 390, 393, 595, 838, 1097, 1254, 1554
FokI GGATG 7 cut(s) 92, 188, 484, 700, 1037, 1055, 1159
FriOI GRGCYC 1 cut(s) 224
Fsp4HI GCNGC 8 cut(s) 40, 390, 393, 595, 838, 1097, 1254, 1554
FspBI CTAG 3 cut(s) 264, 404, 533
GluI GCNGC 8 cut(s) 40, 390, 393, 595, 838, 1097, 1254, 1554
GsaI CCCAGC 2 cut(s) 261, 806
GsuI CTGGAG 1 cut(s) 1112
HaeIII GGCC 4 cut(s) 120, 452, 578, 1524
HapII CCGG 2 cut(s) 492, 947
HinfI GANTC 5 cut(s) 284, 536, 1276, 1438, 1474
HpaII CCGG 2 cut(s) 492, 947
HphI GGTGA 6 cut(s) 40, 764, 818, 1207, 1437, 1438
Hpy188I TCNGA 5 cut(s) 376, 447, 567, 939, 1328
Hpy188III TCNNGA 7 cut(s) 162, 170, 533, 826, 1091, 1213, 1421
Hpy99I CGWCG 1 cut(s) 304
HpyAV CCTTC 6 cut(s) 75, 168, 347, 379, 447, 1496
HpyCH4III ACNGT 3 cut(s) 35, 694, 1233
HpyCH4IV ACGT 2 cut(s) 427, 601
HpyF10VI GCNNNNNNNGC 8 cut(s) 214, 398, 846, 921, 1001, 1010, 1295, 1393
HpyF3I CTNAG 8 cut(s) 60, 93, 347, 684, 793, 975, 1014, 1419
HpySE526I ACGT 2 cut(s) 427, 601
Kzo9I GATC 3 cut(s) 494, 562, 1118
LguI GCTCTTC 1 cut(s) 1305
LmnI GCTCC 1 cut(s) 1093
Lsp1109I GCAGC 5 cut(s) 376, 849, 1108, 1265, 1540
LweI GCATC 3 cut(s) 166, 802, 1181
MaeI CTAG 3 cut(s) 264, 404, 533
MaeII ACGT 2 cut(s) 427, 601
MaeIII GTNAC 5 cut(s) 694, 727, 949, 1018, 1426
MalI GATC 3 cut(s) 496, 564, 1120
MbiI CCGCTC 2 cut(s) 395, 597
MboI GATC 3 cut(s) 494, 562, 1118
MfeI CAATTG 2 cut(s) 516, 558
MhlI GDGCHC 3 cut(s) 224, 403, 1006
MlsI TGGCCA 1 cut(s) 120
MluNI TGGCCA 1 cut(s) 120
MlyI GAGTC 2 cut(s) 293, 545
MmeI TCCRAC 1 cut(s) 689
Mox20I TGGCCA 1 cut(s) 120
Mph1103I ATGCAT 2 cut(s) 546, 1541
MroXI GAANNNNTTC 1 cut(s) 933
MscI TGGCCA 1 cut(s) 120
MseI TTAA 4 cut(s) 473, 618, 897, 984
MslI CAYNNNNRTG 1 cut(s) 1193
Msp20I TGGCCA 1 cut(s) 120
MspA1I CMGCKG 3 cut(s) 840, 1486, 1553
MspI CCGG 2 cut(s) 492, 947
MspR9I CCNGG 4 cut(s) 117, 291, 454, 481
MunI CAATTG 2 cut(s) 516, 558
Mva1269I GAATGC 1 cut(s) 839
MvaI CCWGG 4 cut(s) 117, 291, 454, 481
MwoI GCNNNNNNNGC 8 cut(s) 214, 398, 846, 921, 1001, 1010, 1295, 1393
NcoI CCATGG 1 cut(s) 1191
NdeII GATC 3 cut(s) 494, 562, 1118
NlaIV GGNNCC 2 cut(s) 19, 295
NmeAIII GCCGAG 2 cut(s) 243, 1372
NmuCI GTSAC 4 cut(s) 694, 727, 949, 1426
NsiI ATGCAT 2 cut(s) 546, 1541
NspI RCATGY 5 cut(s) 208, 915, 1072, 1285, 1560
OliI CACNNNNGTG 1 cut(s) 1193
PaeI GCATGC 2 cut(s) 1072, 1560
PaeR7I CTCGAG 1 cut(s) 396
PciSI GCTCTTC 1 cut(s) 1305
PctI GAATGC 1 cut(s) 839
PdmI GAANNNNTTC 1 cut(s) 933
PfeI GAWTC 3 cut(s) 1276, 1438, 1474
PinAI ACCGGT 1 cut(s) 946
PkrI GCNGC 8 cut(s) 41, 391, 394, 596, 839, 1098, 1255, 1555
PleI GAGTC 2 cut(s) 292, 544
PmaCI CACGTG 1 cut(s) 428
PmlI CACGTG 1 cut(s) 428
PpsI GAGTC 2 cut(s) 292, 544
Ppu21I YACGTR 1 cut(s) 428
PpuMI RGGWCCY 1 cut(s) 293
Psp5II RGGWCCY 1 cut(s) 293
Psp6I CCWGG 4 cut(s) 115, 289, 452, 479
PspCI CACGTG 1 cut(s) 428
PspFI CCCAGC 2 cut(s) 257, 802
PspGI CCWGG 4 cut(s) 115, 289, 452, 479
PspN4I GGNNCC 2 cut(s) 19, 295
PspPI GGNCC 5 cut(s) 293, 450, 456, 577, 1523
PspPPI RGGWCCY 1 cut(s) 293
PspXI VCTCGAGB 1 cut(s) 396
PstNI CAGNNNCTG 2 cut(s) 611, 1102
PvuII CAGCTG 1 cut(s) 840
RseI CAYNNNNRTG 1 cut(s) 1193
SapI GCTCTTC 1 cut(s) 1305
SaqAI TTAA 4 cut(s) 473, 618, 897, 984
SatI GCNGC 8 cut(s) 40, 390, 393, 595, 838, 1097, 1254, 1554
Sau3AI GATC 3 cut(s) 494, 562, 1118
Sau96I GGNCC 5 cut(s) 293, 450, 456, 577, 1523
SchI GAGTC 2 cut(s) 293, 545
ScrFI CCNGG 4 cut(s) 117, 291, 454, 481
SduI GDGCHC 3 cut(s) 224, 403, 1006
SfaNI GCATC 3 cut(s) 166, 802, 1181
Sfr274I CTCGAG 1 cut(s) 396
SinI GGWCC 2 cut(s) 293, 456
SlaI CTCGAG 1 cut(s) 396
SmiMI CAYNNNNRTG 1 cut(s) 1193
SmlI CTYRAG 3 cut(s) 170, 396, 824
SmoI CTYRAG 3 cut(s) 170, 396, 824
SphI GCATGC 2 cut(s) 1072, 1560
SsiI CCGC 7 cut(s) 39, 393, 419, 595, 924, 1486, 1551
SspMI CTAG 3 cut(s) 264, 404, 533
StyD4I CCNGG 4 cut(s) 115, 289, 452, 479
StyI CCWWGG 1 cut(s) 1191
TaaI ACNGT 3 cut(s) 35, 694, 1233
TaiI ACGT 2 cut(s) 430, 604
TaqI TCGA 5 cut(s) 317, 397, 784, 991, 1184
TaqII GACCGA 1 cut(s) 1450
TauI GCSGC 3 cut(s) 42, 395, 597
TfiI GAWTC 3 cut(s) 1276, 1438, 1474
Tru1I TTAA 4 cut(s) 473, 618, 897, 984
Tru9I TTAA 4 cut(s) 473, 618, 897, 984
TscAI CASTG 3 cut(s) 97, 652, 1245
TseFI GTSAC 4 cut(s) 694, 727, 949, 1426
TseI GCWGC 5 cut(s) 389, 837, 1096, 1253, 1553
Tsp45I GTSAC 4 cut(s) 694, 727, 949, 1426
TspDTI ATGAA 3 cut(s) 1260, 1509, 1556
TspRI CASTG 3 cut(s) 97, 652, 1245
VpaK11BI GGWCC 2 cut(s) 293, 456
XapI RAATTY 5 cut(s) 187, 241, 786, 963, 970
XbaI TCTAGA 1 cut(s) 532
XceI RCATGY 5 cut(s) 208, 915, 1072, 1285, 1560
XcmI CCANNNNNNNNNTGG 1 cut(s) 676
XhoI CTCGAG 1 cut(s) 396
XmnI GAANNNNTTC 1 cut(s) 933
XspI CTAG 3 cut(s) 264, 404, 533
Zsp2I ATGCAT 2 cut(s) 546, 1541
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.