Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010831

Physical Location & Seq

Genomic Coordinates Forward (+)

14730779 .. 14733126

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGTCACGCCATTGGTAGGAGGAATTGCTGTAGCTGCTGCTGCATATGCTGGTAGGTATAGCATTCAAGCTTGGCAAGCGTTCAAAGCAAGACCACCGACAGCTAGACTGCGGAAATTCTATGAGGGTGGTTTTCAATCTACCATGACCAAAAGGGAAGCTGCTCTCATACTTGGAGTGAGGGAGACTACTCCTAAAGACAAAATCCGGGAAGCACATTGGAGGGTGATGGTTGCTAACCATCCGGATGCAGGGGGTAGTCATTACCTTGCATCCAAAATTAACGAAGCTAAAGAAATGATGCTTGGAAGAACCAAGGGCACCGGCTCTGCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002082 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006140 GO:0006950 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009892 GO:0009987 GO:0009991 GO:0010563 GO:0016020 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0019866 GO:0031090 GO:0031323 GO:0031324 GO:0031333 GO:0031667 GO:0031668 GO:0031669 GO:0031966 GO:0031967 GO:0031975 GO:0033554 GO:0042325 GO:0042326 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043457 GO:0043467 GO:0044087 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0045934 GO:0045936 GO:0045980 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051174 GO:0051716 GO:0062012 GO:0062014 GO:0065007 GO:0071496 GO:0080090 GO:0090324 GO:1900542 GO:1900543 GO:1901856 GO:1902956 GO:1902957 GO:1903578 GO:1903579 GO:1905446 GO:1905447

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

113

Amino Acids

12.22

Weight (kDa)

10.27

Isoelectric Point (pI)

23.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010831)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09700 AT5G03030 AT5G03030
fragaria_vesca	FvH4_6g15420
malus_domestica	MD04G1103700.v1.1 MD12G1123600.v1.1
prunus_persica	Prupe.6G240700_v2.0.a1
pyrus_communis	pycom04g09890 pycom12g12230
rosa_chinensis	RchiOBHm_Chr3g0468901 RchiOBHm_Chr6g0264141
rosa_laevigata	RLG00000024402
rosa_multiflora	Rmu_sc0001639.1_g000012 Rmu_sc0003298.1_g000003
rosa_roxburghii	Rroxscaffold_6G00412470
rosa_rugosa	Rorug03G0097500
rosa_samantha	Rh3AG147100 Rh3BG169600 Rh3DG205500
rosa_wichuraiana	Rw3G013840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	320
AccIII	TCCGGA	1 cut(s)	244
AciI	CCGC	1 cut(s)	112
AcsI	RAATTY	1 cut(s)	116
AfiI	CCNNNNNNNGG	2 cut(s)	17, 251
AgsI	TTSAA	3 cut(s)	68, 85, 137
AjuI	GAANNNNNNNTTGG	2 cut(s)	288, 320
AluBI	AGCT	5 cut(s)	35, 71, 104, 161, 290
AluI	AGCT	5 cut(s)	35, 71, 104, 161, 290
Alw26I	GTCTC	1 cut(s)	179
Aor13HI	TCCGGA	1 cut(s)	244
ApeKI	GCWGC	4 cut(s)	35, 38, 41, 161
ApoI	RAATTY	1 cut(s)	116
AsuC2I	CCSGG	1 cut(s)	209
AsuHPI	GGTGA	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	323
BanI	GGYRCC	1 cut(s)	320
BbvI	GCAGC	4 cut(s)	22, 25, 28, 148
BccI	CCATC	2 cut(s)	223, 249
BcnI	CCSGG	1 cut(s)	209
BcoDI	GTCTC	1 cut(s)	179
BfaI	CTAG	1 cut(s)	105
BfmI	CTRYAG	1 cut(s)	30
BisI	GCNGC	4 cut(s)	36, 39, 42, 162
BlsI	GCNGC	4 cut(s)	37, 40, 43, 163
Bme1390I	CCNGG	1 cut(s)	209
BmiI	GGNNCC	1 cut(s)	322
BmrFI	CCNGG	1 cut(s)	209
BmsI	GCATC	3 cut(s)	238, 281, 291
BpuMI	CCSGG	1 cut(s)	209
BsaJI	CCNNGG	1 cut(s)	315
BsaWI	WCCGGW	1 cut(s)	244
Bsc4I	CCNNNNNNNGG	2 cut(s)	17, 251
Bse118I	RCCGGY	1 cut(s)	323
BseAI	TCCGGA	1 cut(s)	244
BseDI	CCNNGG	1 cut(s)	315
BseGI	GGATG	3 cut(s)	241, 253, 272
BseLI	CCNNNNNNNGG	2 cut(s)	17, 251
BseSI	GKGCMC	1 cut(s)	323
BseXI	GCAGC	4 cut(s)	22, 25, 28, 148
BshNI	GGYRCC	1 cut(s)	320
BsiSI	CCGG	3 cut(s)	208, 245, 324
BslI	CCNNNNNNNGG	2 cut(s)	17, 251
BsmAI	GTCTC	1 cut(s)	179
BsmI	GAATGC	1 cut(s)	63
Bsp1286I	GDGCHC	1 cut(s)	323
Bsp13I	TCCGGA	1 cut(s)	244
BspACI	CCGC	1 cut(s)	112
BspEI	TCCGGA	1 cut(s)	244
BspLI	GGNNCC	1 cut(s)	322
BspT107I	GGYRCC	1 cut(s)	320
BsrFI	RCCGGY	1 cut(s)	323
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	1 cut(s)	315
BssT1I	CCWWGG	1 cut(s)	315
BstC8I	GCNNGC	1 cut(s)	78
BstF5I	GGATG	3 cut(s)	241, 253, 272
BstMAI	GTCTC	1 cut(s)	179
BstMWI	GCNNNNNNNGC	5 cut(s)	35, 41, 47, 77, 86
BstSCI	CCNGG	1 cut(s)	207
BstSFI	CTRYAG	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	323
BstV1I	GCAGC	4 cut(s)	22, 25, 28, 148
BtsCI	GGATG	3 cut(s)	241, 253, 272
Cac8I	GCNNGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	323
CviAII	CATG	1 cut(s)	145
CviJI	RGCY	6 cut(s)	35, 71, 104, 161, 290, 327
CviKI_1	RGCY	6 cut(s)	35, 71, 104, 161, 290, 327
Eco130I	CCWWGG	1 cut(s)	315
EcoT14I	CCWWGG	1 cut(s)	315
ErhI	CCWWGG	1 cut(s)	315
FaeI	CATG	1 cut(s)	148
FaiI	YATR	6 cut(s)	46, 48, 60, 123, 146, 170
FatI	CATG	1 cut(s)	144
FauNDI	CATATG	1 cut(s)	46
Fnu4HI	GCNGC	4 cut(s)	36, 39, 42, 162
FokI	GGATG	3 cut(s)	228, 259, 260
Fsp4HI	GCNGC	4 cut(s)	36, 39, 42, 162
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	4 cut(s)	36, 39, 42, 162
HapII	CCGG	3 cut(s)	208, 245, 324
Hin1II	CATG	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	69
HpaII	CCGG	3 cut(s)	208, 245, 324
HphI	GGTGA	1 cut(s)	238
Hpy188III	TCNNGA	1 cut(s)	245
HpyCH4V	TGCA	4 cut(s)	44, 251, 272, 332
HpyF10VI	GCNNNNNNNGC	5 cut(s)	35, 41, 47, 77, 86
Hsp92II	CATG	1 cut(s)	148
Kpn2I	TCCGGA	1 cut(s)	244
LpnPI	CCDG	4 cut(s)	36, 221, 237, 258
Lsp1109I	GCAGC	4 cut(s)	22, 25, 28, 148
LweI	GCATC	3 cut(s)	238, 281, 291
MaeI	CTAG	1 cut(s)	105
MaeIII	GTNAC	1 cut(s)	4
MboII	GAAGA	1 cut(s)	321
MhlI	GDGCHC	1 cut(s)	323
MluCI	AATT	3 cut(s)	24, 116, 279
MnlI	CCTC	4 cut(s)	14, 118, 174, 216
MroI	TCCGGA	1 cut(s)	244
MseI	TTAA	2 cut(s)	282, 337
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	3 cut(s)	208, 245, 324
MspR9I	CCNGG	1 cut(s)	209
Mva1269I	GAATGC	1 cut(s)	63
MwoI	GCNNNNNNNGC	5 cut(s)	35, 41, 47, 77, 86
NciI	CCSGG	1 cut(s)	209
NdeI	CATATG	1 cut(s)	46
NlaIII	CATG	1 cut(s)	148
NlaIV	GGNNCC	1 cut(s)	322
NmuCI	GTSAC	1 cut(s)	4
PctI	GAATGC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	4 cut(s)	37, 40, 43, 163
PspN4I	GGNNCC	1 cut(s)	322
RseI	CAYNNNNRTG	1 cut(s)	246
SaqAI	TTAA	2 cut(s)	282, 337
SatI	GCNGC	4 cut(s)	36, 39, 42, 162
ScrFI	CCNGG	1 cut(s)	209
SduI	GDGCHC	1 cut(s)	323
SetI	ASST	7 cut(s)	37, 59, 73, 106, 163, 270, 292
SfaNI	GCATC	3 cut(s)	238, 281, 291
SfcI	CTRYAG	1 cut(s)	30
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse9I	AATT	3 cut(s)	24, 116, 279
SsiI	CCGC	1 cut(s)	112
SspMI	CTAG	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	315
TasI	AATT	3 cut(s)	24, 116, 279
Tru1I	TTAA	2 cut(s)	282, 337
Tru9I	TTAA	2 cut(s)	282, 337
TseFI	GTSAC	1 cut(s)	4
TseI	GCWGC	4 cut(s)	35, 38, 41, 161
Tsp45I	GTSAC	1 cut(s)	4
XapI	RAATTY	1 cut(s)	116
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.