Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0010307

Physical Location & Seq

Genomic Coordinates Reverse (-)

15827432 .. 15832267

Gene Structure 4836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 936 bp

ATGGGTTTCTTTGAATTGGTGACGGGAAAACGAGGGCCAAGTGGGTTTGGATCAGCTTCCACTGCTGAGCAGGTTACTGAAGGAGTTGATGCATCCAGCCTTACCGCCATTGTTACTGGAGGAGCTAGTGGGATTGGGTTAGAGACTGCAAGGGTGTTGGCACTCCGCGGAGCTCATATCATCATCGCCGCCAGAAACCTTGAGGCTGCAAGTGAAGCTAAACAGCTTATTCTTAAAGACAATCATACAGCTCGAATCGATGTTCTGAAACTTAACCTCAGCTCTATCAAGTCTGTTAGATCATTTGTCAACAGCTTCAACGCTCTCGATCTCCCTCTCAACCTCTTAATAAACAATGCTGGTGTTATGTTCTGCCCCTTCCAGCTTTCAGAAGATGGAATAGAGATGCACTTTGCAACCAATCATCTTGGTAATTTTCTACTACTATCTCTTTCTGTTTTAATTCCAATTACCTATTTTACAGGTCATTTTCTGTTAACGAACCTTCTCCTTGAGAAAATGAAGACTACTGCTAAAACTACTGGTGTGGAAGGCAGAATTGTGAATCTATCATCGCTTGCTCATGCAGGCACTTATAAAGGCGGGATTCGATTCGACAAAATCAATGATCCAGATAGTTACTCCACGATAAATGCATACGGGCAATCCAAATTAGCAAACTTACTGCATGCCAATGAGCTCTCTCGTCGATTGCAGGCTTTTAAGATGTTCACCTTCTGCATGTGGAAGAATGTACCTCAGGGAGCAGCCACAACATCGTATGTAGCTCTGCACCCAAAGTTGAAAGGTGTGACCGGAAAATACTATGCCGACTGCAATGAGACGGAACCCAGCAAAGATGCCGGTGATGAAAACTTGGCCAAAAAGCTTTGGGACTTCAGCAACAAGTTGATTGATGGAGCTTCCGAAATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00830 ko01100 map00830 map01100

Pfam Domains

Protein Families

adh_short

Protein Analysis

312

Amino Acids

33.61

Weight (kDa)

8.32

Isoelectric Point (pI)

28.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
adh_short	PF00106	35 - 149	1.5e-16	short chain dehydrogenase
KR	PF08659	35 - 123	3.8e-08	KR domain
adh_short_C2	PF13561	42 - 147	1.8e-06	Enoyl-(Acyl carrier protein) reductase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37540 AT2G37540 AT5G02540
fragaria_vesca	FvH4_6g14170 FvH4_6g14170
malus_domestica	MD04G1123600.v1.1 MD04G1124100.v1.1 MD12G1139500.v1.1
prunus_persica	Prupe.6G251300_v2.0.a1 Prupe.6G251300_v2.0.a1 Prupe.6G251400_v2.0.a1
pyrus_communis	pycom12g13380
rosa_chinensis	RchiOBHm_Chr3g0467121
rosa_laevigata	RLG00000024524
rosa_multiflora	Rmu_sc0018989.1_g000002
rosa_roxburghii	Rroxscaffold_6G00413870
rosa_rugosa	Rorug03G0085500
rosa_samantha	Rh3BG154900 Rh3CG154700 Rh3DG155800
rosa_wichuraiana	Rw3G012640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
Acc36I	ACCTGC	1 cut(s)	61
AccII	CGCG	1 cut(s)	168
AciI	CCGC	5 cut(s)	105, 166, 168, 189, 603
AclWI	GGATC	2 cut(s)	58, 623
AcoI	YGGCCR	1 cut(s)	879
AcuI	CTGAAG	2 cut(s)	99, 883
AfaI	GTAC	1 cut(s)	756
AgsI	TTSAA	3 cut(s)	14, 319, 805
Alw21I	GWGCWC	2 cut(s)	175, 702
Alw26I	GTCTC	2 cut(s)	137, 836
AlwI	GGATC	2 cut(s)	58, 623
AoxI	GGCC	2 cut(s)	35, 879
ApeKI	GCWGC	2 cut(s)	206, 767
AspS9I	GGNCC	1 cut(s)	35
AsuHPI	GGTGA	3 cut(s)	31, 724, 878
AxyI	CCTNAGG	1 cut(s)	759
BalI	TGGCCA	1 cut(s)	881
BanII	GRGCYC	2 cut(s)	175, 702
BbsI	GAAGAC	1 cut(s)	530
Bbv12I	GWGCWC	2 cut(s)	175, 702
BbvCI	CCTCAGC	1 cut(s)	278
BbvI	GCAGC	2 cut(s)	193, 779
BccI	CCATC	2 cut(s)	389, 911
BcoDI	GTCTC	2 cut(s)	137, 836
BfaI	CTAG	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	189, 207, 768
BlpI	GCTNAGC	1 cut(s)	66
BlsI	GCNGC	3 cut(s)	190, 208, 769
BmgT120I	GGNCC	1 cut(s)	35
BmiI	GGNNCC	1 cut(s)	849
BmsI	GCATC	4 cut(s)	79, 101, 396, 850
BpiI	GAAGAC	1 cut(s)	530
BpmI	CTGGAG	1 cut(s)	138
Bpu10I	CCTNAGC	1 cut(s)	278
Bpu1102I	GCTNAGC	1 cut(s)	66
BpuEI	CTTGAG	2 cut(s)	221, 533
Bsa29I	ATCGAT	1 cut(s)	258
BsaJI	CCNNGG	1 cut(s)	166
BsaWI	WCCGGW	1 cut(s)	815
Bse118I	RCCGGY	1 cut(s)	863
Bse1I	ACTGG	2 cut(s)	121, 547
Bse21I	CCTNAGG	1 cut(s)	759
Bse3DI	GCAATG	1 cut(s)	844
BseCI	ATCGAT	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	166
BseGI	GGATG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	844
BseMII	CTCAG	3 cut(s)	57, 292, 773
BseNI	ACTGG	2 cut(s)	121, 547
BseRI	GAGGAG	1 cut(s)	135
BseXI	GCAGC	2 cut(s)	193, 779
BseYI	CCCAGC	1 cut(s)	851
BsgI	GTGCAG	1 cut(s)	776
Bsh1236I	CGCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	37, 881
BshVI	ATCGAT	1 cut(s)	258
BsiHKAI	GWGCWC	2 cut(s)	175, 702
BsiSI	CCGG	2 cut(s)	816, 864
BslFI	GGGAC	1 cut(s)	908
BsmAI	GTCTC	2 cut(s)	137, 836
BsmBI	CGTCTC	1 cut(s)	836
BsmFI	GGGAC	1 cut(s)	908
BsnI	GGCC	2 cut(s)	37, 881
Bsp1286I	GDGCHC	2 cut(s)	175, 702
Bsp143I	GATC	4 cut(s)	50, 299, 328, 628
Bsp1720I	GCTNAGC	1 cut(s)	66
BspACI	CCGC	5 cut(s)	105, 166, 168, 189, 603
BspANI	GGCC	2 cut(s)	37, 881
BspCNI	CTCAG	3 cut(s)	58, 291, 772
BspDI	ATCGAT	1 cut(s)	258
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	849
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	2 cut(s)	58, 623
BsrDI	GCAATG	1 cut(s)	844
BsrFI	RCCGGY	1 cut(s)	863
BsrI	ACTGG	2 cut(s)	121, 547
BssAI	RCCGGY	1 cut(s)	863
BssECI	CCNNGG	1 cut(s)	166
BssMI	GATC	4 cut(s)	50, 299, 328, 628
BstC8I	GCNNGC	4 cut(s)	579, 589, 690, 717
BstDEI	CTNAG	3 cut(s)	66, 278, 759
BstDSI	CCRYGG	1 cut(s)	166
BstF5I	GGATG	1 cut(s)	92
BstFNI	CGCG	1 cut(s)	168
BstKTI	GATC	4 cut(s)	53, 302, 331, 631
BstMAI	GTCTC	2 cut(s)	137, 836
BstMBI	GATC	4 cut(s)	50, 299, 328, 628
BstMWI	GCNNNNNNNGC	2 cut(s)	62, 215
BstNSI	RCATGY	2 cut(s)	692, 745
BstUI	CGCG	1 cut(s)	168
BstV1I	GCAGC	2 cut(s)	193, 779
BstV2I	GAAGAC	1 cut(s)	530
Bsu15I	ATCGAT	1 cut(s)	258
Bsu36I	CCTNAGG	1 cut(s)	759
BsuRI	GGCC	2 cut(s)	37, 881
BsuTUI	ATCGAT	1 cut(s)	258
BtgI	CCRYGG	1 cut(s)	166
BtgZI	GCGATG	2 cut(s)	169, 558
BtsCI	GGATG	1 cut(s)	92
BtsI	GCAGTG	1 cut(s)	60
BtsIMutI	CAGTG	1 cut(s)	60
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	4 cut(s)	579, 589, 690, 717
Cfr10I	RCCGGY	1 cut(s)	863
Cfr13I	GGNCC	1 cut(s)	35
Cfr42I	CCGCGG	1 cut(s)	169
ClaI	ATCGAT	1 cut(s)	258
Csp6I	GTAC	1 cut(s)	755
CviAII	CATG	3 cut(s)	584, 689, 742
CviQI	GTAC	1 cut(s)	755
DdeI	CTNAG	3 cut(s)	66, 278, 759
DpnI	GATC	4 cut(s)	52, 301, 330, 630
DpnII	GATC	4 cut(s)	50, 299, 328, 628
EaeI	YGGCCR	1 cut(s)	879
Ecl136II	GAGCTC	2 cut(s)	173, 700
Eco24I	GRGCYC	2 cut(s)	175, 702
Eco53kI	GAGCTC	2 cut(s)	173, 700
Eco57I	CTGAAG	2 cut(s)	99, 883
Eco81I	CCTNAGG	1 cut(s)	759
EcoICRI	GAGCTC	2 cut(s)	173, 700
EcoT22I	ATGCAT	2 cut(s)	94, 658
EcoT38I	GRGCYC	2 cut(s)	175, 702
Esp3I	CGTCTC	1 cut(s)	836
FaeI	CATG	3 cut(s)	587, 692, 745
FaqI	GGGAC	1 cut(s)	908
FatI	CATG	3 cut(s)	583, 688, 741
FauI	CCCGC	1 cut(s)	596
Fnu4HI	GCNGC	3 cut(s)	189, 207, 768
FokI	GGATG	1 cut(s)	79
FriOI	GRGCYC	2 cut(s)	175, 702
Fsp4HI	GCNGC	3 cut(s)	189, 207, 768
FspBI	CTAG	1 cut(s)	126
GluI	GCNGC	3 cut(s)	189, 207, 768
GsaI	CCCAGC	1 cut(s)	855
GsuI	CTGGAG	1 cut(s)	138
HaeIII	GGCC	2 cut(s)	37, 881
HapII	CCGG	2 cut(s)	816, 864
Hin1II	CATG	3 cut(s)	587, 692, 745
HincII	GTYRAC	2 cut(s)	310, 498
HindII	GTYRAC	2 cut(s)	310, 498
HindIII	AAGCTT	1 cut(s)	887
HinfI	GANTC	4 cut(s)	255, 565, 607, 612
HpaI	GTTAAC	1 cut(s)	498
HpaII	CCGG	2 cut(s)	816, 864
HphI	GGTGA	3 cut(s)	31, 724, 878
Hpy166II	GTNNAC	3 cut(s)	310, 498, 732
Hpy188I	TCNGA	4 cut(s)	267, 391, 928, 935
Hpy188III	TCNNGA	2 cut(s)	326, 632
Hpy8I	GTNNAC	3 cut(s)	310, 498, 732
Hpy99I	CGWCG	1 cut(s)	711
HpyAV	CCTTC	5 cut(s)	74, 388, 515, 545, 745
HpyF10VI	GCNNNNNNNGC	2 cut(s)	62, 215
HpyF3I	CTNAG	3 cut(s)	66, 278, 759
Hsp92II	CATG	3 cut(s)	587, 692, 745
KspAI	GTTAAC	1 cut(s)	498
KspI	CCGCGG	1 cut(s)	169
Kzo9I	GATC	4 cut(s)	50, 299, 328, 628
LmnI	GCTCC	4 cut(s)	122, 170, 764, 920
Lsp1109I	GCAGC	2 cut(s)	193, 779
LweI	GCATC	4 cut(s)	79, 101, 396, 850
MaeI	CTAG	1 cut(s)	126
MaeIII	GTNAC	5 cut(s)	19, 73, 112, 638, 811
MalI	GATC	4 cut(s)	52, 301, 330, 630
MboI	GATC	4 cut(s)	50, 299, 328, 628
MboII	GAAGA	3 cut(s)	404, 535, 760
MhlI	GDGCHC	2 cut(s)	175, 702
MlsI	TGGCCA	1 cut(s)	881
MluCI	AATT	6 cut(s)	14, 433, 462, 468, 558, 671
MluNI	TGGCCA	1 cut(s)	881
MnlI	CCTC	7 cut(s)	26, 113, 196, 287, 345, 353, 768
Mox20I	TGGCCA	1 cut(s)	881
Mph1103I	ATGCAT	2 cut(s)	94, 658
MscI	TGGCCA	1 cut(s)	881
MseI	TTAA	6 cut(s)	234, 273, 347, 461, 497, 723
MslI	CAYNNNNRTG	1 cut(s)	693
Msp20I	TGGCCA	1 cut(s)	881
MspA1I	CMGCKG	1 cut(s)	168
MspI	CCGG	2 cut(s)	816, 864
MvnI	CGCG	1 cut(s)	168
MwoI	GCNNNNNNNGC	2 cut(s)	62, 215
NdeII	GATC	4 cut(s)	50, 299, 328, 628
NlaIII	CATG	3 cut(s)	587, 692, 745
NlaIV	GGNNCC	1 cut(s)	849
NmuCI	GTSAC	2 cut(s)	19, 811
NsiI	ATGCAT	2 cut(s)	94, 658
NspI	RCATGY	2 cut(s)	692, 745
PaeI	GCATGC	1 cut(s)	692
PfeI	GAWTC	4 cut(s)	255, 565, 607, 612
PkrI	GCNGC	3 cut(s)	190, 208, 769
PsiI	TTATAA	1 cut(s)	597
Psp124BI	GAGCTC	2 cut(s)	175, 702
PspFI	CCCAGC	1 cut(s)	851
PspN4I	GGNNCC	1 cut(s)	849
PspPI	GGNCC	1 cut(s)	35
RsaI	GTAC	1 cut(s)	756
RsaNI	GTAC	1 cut(s)	755
RseI	CAYNNNNRTG	1 cut(s)	693
SacI	GAGCTC	2 cut(s)	175, 702
SacII	CCGCGG	1 cut(s)	169
SaqAI	TTAA	6 cut(s)	234, 273, 347, 461, 497, 723
SatI	GCNGC	3 cut(s)	189, 207, 768
Sau3AI	GATC	4 cut(s)	50, 299, 328, 628
Sau96I	GGNCC	1 cut(s)	35
SduI	GDGCHC	2 cut(s)	175, 702
SfaNI	GCATC	4 cut(s)	79, 101, 396, 850
Sfr303I	CCGCGG	1 cut(s)	169
SgrBI	CCGCGG	1 cut(s)	169
SmiMI	CAYNNNNRTG	1 cut(s)	693
SmlI	CTYRAG	2 cut(s)	200, 512
SmoI	CTYRAG	2 cut(s)	200, 512
SphI	GCATGC	1 cut(s)	692
Sse9I	AATT	6 cut(s)	14, 433, 462, 468, 558, 671
SsiI	CCGC	5 cut(s)	105, 166, 168, 189, 603
SspMI	CTAG	1 cut(s)	126
SstI	GAGCTC	2 cut(s)	175, 702
TaqI	TCGA	6 cut(s)	253, 258, 327, 610, 615, 709
TasI	AATT	6 cut(s)	14, 433, 462, 468, 558, 671
TauI	GCSGC	1 cut(s)	191
TfiI	GAWTC	4 cut(s)	255, 565, 607, 612
Tru1I	TTAA	6 cut(s)	234, 273, 347, 461, 497, 723
Tru9I	TTAA	6 cut(s)	234, 273, 347, 461, 497, 723
TscAI	CASTG	1 cut(s)	67
TseFI	GTSAC	2 cut(s)	19, 811
TseI	GCWGC	2 cut(s)	206, 767
Tsp45I	GTSAC	2 cut(s)	19, 811
TspDTI	ATGAA	2 cut(s)	536, 885
TspGWI	ACGGA	1 cut(s)	860
TspRI	CASTG	1 cut(s)	67
XceI	RCATGY	2 cut(s)	692, 745
XspI	CTAG	1 cut(s)	126
Zsp2I	ATGCAT	2 cut(s)	94, 658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.