pycom12g13980
ERF Family

Tetratricopeptide repeat (TPR)-like superfamily protein

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
Physical Location & Seq
Forward (+)
16425854 .. 16428550
2697 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1287 bp
ATGATTCGCACCGCAGTTAAGCTATCGCTATCTGCGGCCACCGTCAATCGAACCGCCAAGCTCGGGGTCTCCATCCTTCATCGATCACCGCCGTCCAGACTTGTCCACGACGGGATCAACGGCTTGAACGCCAACCCCGTTGCTCTTCAGATGATCAACTACGCTCTCTCTCACGCTAGGTCTCAGAAATCAGATGAATCGTATGCGCAAGGTGTGCTTGTACTGGAACAGTGCCTTTCGACTCAGCCGAGCGAAGGGCAAGACCCTGCTGGTGATAATTCAAGGGGAATGGTGTTGTTGGCCATGTCCACTTTATCATCTGAAAGAGGAAATTTCGGTGAAGCAGTGGAGAAGCTGCAAAAGATTCAAGATTTAACCAACTCTTCAGTTGGTGTTAGAGTTGCCGCCTTGGAGGCTCTTGTCGGACTTCACTTAGAGTTAGAGCAGGATGATACTTCATCAGTGCTCGCAGATAAATGCTTAGAACTGTTGGAGAACAATGAGCCTGGATCAAATGGTGGAGATTTTATAAATGCTCGCGCTAGAGCAGTAAAGGGGCTTGTTGAACTTGTCCATGGTAATACTGCATCAGCTGAATCGTTCTTTCAAGGACTTAAGGACAACCCGGCAATCACTGGTAGTACTGCTTTATCCTATGGAGAATTCTTGCATGCAACACAGAACTTTTCGTTGGCAAAGGATGTCTACCAGAATGTTATTCAAGGGTTGTCCAAGAACGAAGAGTATGGTAATCCGAATGCATTAGCAGCCTGTAATATGTCTGCTGAGGAAGTTTCCCTAGCCGCCACATGTGCTTTAGGACAACTTGAGGCTCACTTGGGGAACTTTGACGATGCCGAGGAGATATTGACTAAGGCTTTAACTATAACTGAGGAACATTTTGGCTCTCGTCACCCCCAGGTTGGTGTTATTTTAACCTGCATAGCTCTCATGTTTCGACGCAAAGCAATGCTAGAGCATTCTAGTGCTCTTTTGATTCAAGAGGGACTTTACAGAAGGGCAATAGAGTTGCTGAAACCCCCACCATTGGACTCAGAAGGTACAGAAGCAAAGGTAGATAGAAGTGATATAGTGGCCCTTGCAAGAGGTGGGTATGCTGAAGTGCTTTGTATCCAACAGAACCGAAAGGATCAAGGTGAAAAAGCAAAGAGTTGGGCGGAGGCTGTATGGAGGAACCGCCGGCTGTCATTGGCCGAAGCACTGGAAGTATCTAATACTAGTTCAGCAGTTCCAATTATAGATGCTCGAATCAGCAGGGTCCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

429

Amino Acids

46.05

Weight (kDa)

5.41

Isoelectric Point (pI)

36.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR_12 PF13424 269 - 326 2.2e-06 Tetratricopeptide repeat
TPR_10 PF13374 269 - 306 1.7e-06 Tetratricopeptide repeat
TPR_NPHP3 PF24885 272 - 329 1.3e-06 Nephrocystin-3 TPR domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0012189)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 530
Acc16I TGCGCA 1 cut(s) 207
Acc36I ACCTGC 1 cut(s) 947
AccI GTMKAC 1 cut(s) 705
AccII CGCG 1 cut(s) 540
AciI CCGC 8 cut(s) 12, 35, 54, 89, 405, 804, 1178, 1198
AclWI GGATC 3 cut(s) 122, 517, 1158
AcoI YGGCCR 3 cut(s) 36, 300, 1212
AcsI RAATTY 2 cut(s) 331, 662
AcuI CTGAAG 3 cut(s) 131, 369, 1140
AfaI GTAC 3 cut(s) 222, 643, 1063
AfiI CCNNNNNNNGG 4 cut(s) 63, 254, 923, 1048
AflII CTTAAG 1 cut(s) 614
AflIII ACRYGT 1 cut(s) 809
AgsI TTSAA 7 cut(s) 127, 282, 368, 566, 608, 722, 1001
AhlI ACTAGT 1 cut(s) 1238
AjnI CCWGG 2 cut(s) 505, 918
AjuI GAANNNNNNNTTGG 2 cut(s) 674, 706
AluBI AGCT 5 cut(s) 22, 61, 355, 593, 947
AluI AGCT 5 cut(s) 22, 61, 355, 593, 947
Alw21I GWGCWC 2 cut(s) 468, 991
Alw26I GTCTC 2 cut(s) 73, 186
AlwI GGATC 3 cut(s) 122, 517, 1158
Ama87I CYCGRG 1 cut(s) 62
AoxI GGCC 4 cut(s) 36, 300, 1095, 1212
ApeKI GCWGC 2 cut(s) 355, 767
ApoI RAATTY 2 cut(s) 331, 662
AspLEI GCGC 2 cut(s) 208, 542
AspS9I GGNCC 2 cut(s) 1096, 1279
AsuC2I CCSGG 1 cut(s) 626
AsuHPI GGTGA 5 cut(s) 78, 284, 350, 905, 1169
AvaI CYCGRG 1 cut(s) 62
AvaII GGWCC 1 cut(s) 1279
BalI TGGCCA 1 cut(s) 302
Bbv12I GWGCWC 2 cut(s) 468, 991
BbvCI CCTCAGC 1 cut(s) 786
BbvI GCAGC 2 cut(s) 342, 779
BccI CCATC 1 cut(s) 80
BceAI ACGGC 2 cut(s) 76, 136
BciT130I CCWGG 2 cut(s) 507, 920
BciVI GTATCC 1 cut(s) 1142
BclI TGATCA 1 cut(s) 153
BcnI CCSGG 1 cut(s) 626
BcoDI GTCTC 2 cut(s) 73, 186
BcuI ACTAGT 1 cut(s) 1238
BfaI CTAG 6 cut(s) 177, 543, 800, 974, 984, 1239
BfrI CTTAAG 1 cut(s) 614
BfuAI ACCTGC 1 cut(s) 947
BfuI GTATCC 1 cut(s) 1142
BglI GCCNNNNNGGC 1 cut(s) 413
BisI GCNGC 5 cut(s) 36, 356, 405, 768, 804
BlsI GCNGC 5 cut(s) 37, 357, 406, 769, 805
BmcAI AGTACT 1 cut(s) 643
Bme1390I CCNGG 3 cut(s) 507, 626, 920
Bme18I GGWCC 1 cut(s) 1279
BmeT110I CYCGRG 1 cut(s) 62
BmgT120I GGNCC 2 cut(s) 1096, 1279
BmiI GGNNCC 2 cut(s) 1196, 1280
BmrFI CCNGG 3 cut(s) 507, 626, 920
BmsI GCATC 3 cut(s) 596, 844, 1252
Bpu10I CCTNAGC 1 cut(s) 786
BpuEI CTTGAG 1 cut(s) 848
BpuMI CCSGG 1 cut(s) 626
Bsa29I ATCGAT 1 cut(s) 82
BsaI GGTCTC 2 cut(s) 73, 186
BsaJI CCNNGG 4 cut(s) 408, 574, 858, 918
Bsc4I CCNNNNNNNGG 4 cut(s) 63, 254, 923, 1048
Bse118I RCCGGY 1 cut(s) 1200
Bse1I ACTGG 3 cut(s) 228, 640, 1227
Bse3DI GCAATG 1 cut(s) 975
BseBI CCWGG 2 cut(s) 507, 920
BseCI ATCGAT 1 cut(s) 82
BseDI CCNNGG 4 cut(s) 408, 574, 858, 918
BseGI GGATG 3 cut(s) 72, 454, 706
BseLI CCNNNNNNNGG 4 cut(s) 63, 254, 923, 1048
BseMI GCAATG 1 cut(s) 975
BseMII CTCAG 5 cut(s) 197, 257, 777, 882, 1068
BseNI ACTGG 3 cut(s) 228, 640, 1227
BseRI GAGGAG 1 cut(s) 875
BseXI GCAGC 2 cut(s) 342, 779
Bsh1236I CGCG 1 cut(s) 540
BshFI GGCC 4 cut(s) 38, 302, 1097, 1214
BshVI ATCGAT 1 cut(s) 82
BsiHKAI GWGCWC 2 cut(s) 468, 991
BsiHKCI CYCGRG 1 cut(s) 62
BsiSI CCGG 2 cut(s) 626, 1201
BslFI GGGAC 1 cut(s) 1020
BslI CCNNNNNNNGG 4 cut(s) 63, 254, 923, 1048
BsmAI GTCTC 2 cut(s) 73, 186
BsmFI GGGAC 1 cut(s) 1020
BsmI GAATGC 2 cut(s) 763, 979
BsnI GGCC 4 cut(s) 38, 302, 1097, 1214
Bso31I GGTCTC 2 cut(s) 73, 186
BsoBI CYCGRG 1 cut(s) 62
Bsp1286I GDGCHC 2 cut(s) 468, 991
Bsp143I GATC 5 cut(s) 83, 114, 153, 509, 1150
Bsp19I CCATGG 1 cut(s) 574
BspACI CCGC 8 cut(s) 12, 35, 54, 89, 405, 804, 1178, 1198
BspANI GGCC 4 cut(s) 38, 302, 1097, 1214
BspCNI CTCAG 5 cut(s) 196, 256, 778, 883, 1067
BspDI ATCGAT 1 cut(s) 82
BspFNI CGCG 1 cut(s) 540
BspLI GGNNCC 2 cut(s) 1196, 1280
BspMI ACCTGC 1 cut(s) 947
BspPI GGATC 3 cut(s) 122, 517, 1158
BspQI GCTCTTC 1 cut(s) 150
BspTI CTTAAG 1 cut(s) 614
BspTNI GGTCTC 2 cut(s) 73, 186
BsrDI GCAATG 1 cut(s) 975
BsrFI RCCGGY 1 cut(s) 1200
BsrI ACTGG 3 cut(s) 228, 640, 1227
BssAI RCCGGY 1 cut(s) 1200
BssECI CCNNGG 4 cut(s) 408, 574, 858, 918
BssMI GATC 5 cut(s) 83, 114, 153, 509, 1150
BssT1I CCWWGG 2 cut(s) 408, 574
Bst2UI CCWGG 2 cut(s) 507, 920
Bst4CI ACNGT 3 cut(s) 43, 231, 489
Bst6I CTCTTC 3 cut(s) 150, 388, 735
BstAFI CTTAAG 1 cut(s) 614
BstAPI GCANNNNNTGC 1 cut(s) 214
BstC8I GCNNGC 4 cut(s) 468, 538, 672, 1202
BstDEI CTNAG 8 cut(s) 183, 243, 433, 481, 786, 873, 891, 1054
BstDSI CCRYGG 1 cut(s) 574
BstF5I GGATG 3 cut(s) 72, 454, 706
BstFNI CGCG 1 cut(s) 540
BstHHI GCGC 2 cut(s) 208, 542
BstKTI GATC 5 cut(s) 86, 117, 156, 512, 1153
BstMAI GTCTC 2 cut(s) 73, 186
BstMBI GATC 5 cut(s) 83, 114, 153, 509, 1150
BstMWI GCNNNNNNNGC 4 cut(s) 214, 413, 767, 812
BstNI CCWGG 2 cut(s) 507, 920
BstNSI RCATGY 2 cut(s) 674, 813
BstSCI CCNGG 3 cut(s) 505, 624, 918
BstUI CGCG 1 cut(s) 540
BstV1I GCAGC 2 cut(s) 342, 779
Bsu15I ATCGAT 1 cut(s) 82
BsuI GTATCC 1 cut(s) 1142
BsuRI GGCC 4 cut(s) 38, 302, 1097, 1214
BsuTUI ATCGAT 1 cut(s) 82
BtgI CCRYGG 1 cut(s) 574
BtsCI GGATG 3 cut(s) 72, 454, 706
BtsI GCAGTG 1 cut(s) 351
BtsIMutI CAGTG 5 cut(s) 236, 351, 468, 633, 1220
BveI ACCTGC 1 cut(s) 947
Cac8I GCNNGC 4 cut(s) 468, 538, 672, 1202
CfoI GCGC 2 cut(s) 208, 542
Cfr10I RCCGGY 1 cut(s) 1200
Cfr13I GGNCC 2 cut(s) 1096, 1279
ClaI ATCGAT 1 cut(s) 82
CseI GACGC 1 cut(s) 969
Csp6I GTAC 3 cut(s) 221, 642, 1062
CviAII CATG 5 cut(s) 304, 575, 671, 810, 952
CviQI GTAC 3 cut(s) 221, 642, 1062
DdeI CTNAG 8 cut(s) 183, 243, 433, 481, 786, 873, 891, 1054
DpnI GATC 5 cut(s) 85, 116, 155, 511, 1152
DpnII GATC 5 cut(s) 83, 114, 153, 509, 1150
EaeI YGGCCR 3 cut(s) 36, 300, 1212
Eam1104I CTCTTC 3 cut(s) 150, 388, 735
EarI CTCTTC 3 cut(s) 150, 388, 735
EciI GGCGGA 1 cut(s) 1193
Eco130I CCWWGG 2 cut(s) 408, 574
Eco31I GGTCTC 2 cut(s) 73, 186
Eco47I GGWCC 1 cut(s) 1279
Eco57I CTGAAG 3 cut(s) 131, 369, 1140
Eco88I CYCGRG 1 cut(s) 62
EcoO109I RGGNCCY 1 cut(s) 1279
EcoRI GAATTC 1 cut(s) 662
EcoRII CCWGG 2 cut(s) 505, 918
EcoT14I CCWWGG 2 cut(s) 408, 574
EcoT22I ATGCAT 1 cut(s) 763
ErhI CCWWGG 2 cut(s) 408, 574
FaeI CATG 5 cut(s) 307, 578, 674, 813, 955
FalI AAGNNNNNCTT 4 cut(s) 201, 233, 993, 1025
FaqI GGGAC 1 cut(s) 1020
FatI CATG 5 cut(s) 303, 574, 670, 809, 951
FbaI TGATCA 1 cut(s) 153
FblI GTMKAC 1 cut(s) 705
Fnu4HI GCNGC 5 cut(s) 36, 356, 405, 768, 804
FokI GGATG 3 cut(s) 59, 461, 713
Fsp4HI GCNGC 5 cut(s) 36, 356, 405, 768, 804
FspBI CTAG 6 cut(s) 177, 543, 800, 974, 984, 1239
FspI TGCGCA 1 cut(s) 207
GlaI GCGC 2 cut(s) 207, 541
GluI GCNGC 5 cut(s) 36, 356, 405, 768, 804
HaeIII GGCC 4 cut(s) 38, 302, 1097, 1214
HapII CCGG 2 cut(s) 626, 1201
HgaI GACGC 1 cut(s) 969
HhaI GCGC 2 cut(s) 208, 542
Hin1II CATG 5 cut(s) 307, 578, 674, 813, 955
Hin6I GCGC 2 cut(s) 206, 540
HinP1I GCGC 2 cut(s) 206, 540
HinfI GANTC 8 cut(s) 4, 197, 241, 364, 596, 997, 1052, 1269
HpaII CCGG 2 cut(s) 626, 1201
HphI GGTGA 5 cut(s) 78, 284, 350, 905, 1169
Hpy166II GTNNAC 3 cut(s) 106, 309, 706
Hpy188I TCNGA 7 cut(s) 150, 186, 193, 322, 425, 756, 1057
Hpy188III TCNNGA 3 cut(s) 96, 368, 1001
Hpy8I GTNNAC 3 cut(s) 106, 309, 706
Hpy99I CGWCG 2 cut(s) 113, 963
HpyAV CCTTC 4 cut(s) 86, 248, 1011, 1052
HpyCH4III ACNGT 3 cut(s) 43, 231, 489
HpyCH4V TGCA 7 cut(s) 358, 587, 670, 674, 761, 942, 1103
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 413, 767, 812
HpyF3I CTNAG 8 cut(s) 183, 243, 433, 481, 786, 873, 891, 1054
Hsp92II CATG 5 cut(s) 307, 578, 674, 813, 955
HspAI GCGC 2 cut(s) 206, 540
KroI GCCGGC 1 cut(s) 1200
KroNI GCCGGC 1 cut(s) 1202
Ksp22I TGATCA 1 cut(s) 153
Kzo9I GATC 5 cut(s) 83, 114, 153, 509, 1150
LguI GCTCTTC 1 cut(s) 150
Lsp1109I GCAGC 2 cut(s) 342, 779
LweI GCATC 3 cut(s) 596, 844, 1252
MaeI CTAG 6 cut(s) 177, 543, 800, 974, 984, 1239
MaeIII GTNAC 1 cut(s) 911
MalI GATC 5 cut(s) 85, 116, 155, 511, 1152
MboI GATC 5 cut(s) 83, 114, 153, 509, 1150
MboII GAAGA 3 cut(s) 137, 375, 752
MhlI GDGCHC 2 cut(s) 468, 991
MlsI TGGCCA 1 cut(s) 302
MluCI AATT 4 cut(s) 277, 331, 662, 1254
MluNI TGGCCA 1 cut(s) 302
MlyI GAGTC 2 cut(s) 235, 1046
MmeI TCCRAC 3 cut(s) 403, 471, 1159
Mox20I TGGCCA 1 cut(s) 302
Mph1103I ATGCAT 1 cut(s) 763
MroNI GCCGGC 1 cut(s) 1200
MscI TGGCCA 1 cut(s) 302
MseI TTAA 5 cut(s) 18, 374, 615, 881, 935
MslI CAYNNNNRTG 1 cut(s) 984
Msp20I TGGCCA 1 cut(s) 302
MspA1I CMGCKG 1 cut(s) 593
MspCI CTTAAG 1 cut(s) 614
MspI CCGG 2 cut(s) 626, 1201
MspR9I CCNGG 3 cut(s) 507, 626, 920
Mva1269I GAATGC 2 cut(s) 763, 979
MvaI CCWGG 2 cut(s) 507, 920
MvnI CGCG 1 cut(s) 540
MwoI GCNNNNNNNGC 4 cut(s) 214, 413, 767, 812
NaeI GCCGGC 1 cut(s) 1202
NciI CCSGG 1 cut(s) 626
NcoI CCATGG 1 cut(s) 574
NdeII GATC 5 cut(s) 83, 114, 153, 509, 1150
NgoMIV GCCGGC 1 cut(s) 1200
NlaIII CATG 5 cut(s) 307, 578, 674, 813, 955
NlaIV GGNNCC 2 cut(s) 1196, 1280
NmeAIII GCCGAG 2 cut(s) 273, 883
NmuCI GTSAC 1 cut(s) 911
NsbI TGCGCA 1 cut(s) 207
NsiI ATGCAT 1 cut(s) 763
NspI RCATGY 2 cut(s) 674, 813
PaeI GCATGC 1 cut(s) 674
PciI ACATGT 1 cut(s) 809
PciSI GCTCTTC 1 cut(s) 150
PcsI WCGNNNNNNNCGW 2 cut(s) 135, 245
PctI GAATGC 2 cut(s) 763, 979
PdiI GCCGGC 1 cut(s) 1202
PfeI GAWTC 6 cut(s) 4, 197, 364, 596, 997, 1269
PkrI GCNGC 5 cut(s) 37, 357, 406, 769, 805
PleI GAGTC 2 cut(s) 235, 1046
PpsI GAGTC 2 cut(s) 235, 1046
PpuMI RGGWCCY 1 cut(s) 1279
PscI ACATGT 1 cut(s) 809
PsiI TTATAA 1 cut(s) 530
Psp5II RGGWCCY 1 cut(s) 1279
Psp6I CCWGG 2 cut(s) 505, 918
PspGI CCWGG 2 cut(s) 505, 918
PspN4I GGNNCC 2 cut(s) 1196, 1280
PspPI GGNCC 2 cut(s) 1096, 1279
PspPPI RGGWCCY 1 cut(s) 1279
PvuII CAGCTG 1 cut(s) 593
RsaI GTAC 3 cut(s) 222, 643, 1063
RsaNI GTAC 3 cut(s) 221, 642, 1062
RseI CAYNNNNRTG 1 cut(s) 984
SapI GCTCTTC 1 cut(s) 150
SaqAI TTAA 5 cut(s) 18, 374, 615, 881, 935
SatI GCNGC 5 cut(s) 36, 356, 405, 768, 804
Sau3AI GATC 5 cut(s) 83, 114, 153, 509, 1150
Sau96I GGNCC 2 cut(s) 1096, 1279
ScaI AGTACT 1 cut(s) 643
SchI GAGTC 2 cut(s) 235, 1046
ScrFI CCNGG 3 cut(s) 507, 626, 920
SduI GDGCHC 2 cut(s) 468, 991
SfaNI GCATC 3 cut(s) 596, 844, 1252
SinI GGWCC 1 cut(s) 1279
SmiMI CAYNNNNRTG 1 cut(s) 984
SmlI CTYRAG 2 cut(s) 614, 827
SmoI CTYRAG 2 cut(s) 614, 827
SpeI ACTAGT 1 cut(s) 1238
SphI GCATGC 1 cut(s) 674
Sse9I AATT 4 cut(s) 277, 331, 662, 1254
SsiI CCGC 8 cut(s) 12, 35, 54, 89, 405, 804, 1178, 1198
SspMI CTAG 6 cut(s) 177, 543, 800, 974, 984, 1239
StyD4I CCNGG 3 cut(s) 505, 624, 918
StyI CCWWGG 2 cut(s) 408, 574
TaaI ACNGT 3 cut(s) 43, 231, 489
TaqI TCGA 5 cut(s) 49, 82, 239, 958, 1267
TasI AATT 4 cut(s) 277, 331, 662, 1254
TatI WGTACW 2 cut(s) 220, 641
TauI GCSGC 3 cut(s) 38, 407, 806
TfiI GAWTC 6 cut(s) 4, 197, 364, 596, 997, 1269
Tru1I TTAA 5 cut(s) 18, 374, 615, 881, 935
Tru9I TTAA 5 cut(s) 18, 374, 615, 881, 935
TscAI CASTG 5 cut(s) 236, 351, 468, 640, 1227
TseFI GTSAC 1 cut(s) 911
TseI GCWGC 2 cut(s) 355, 767
Tsp45I GTSAC 1 cut(s) 911
TspDTI ATGAA 3 cut(s) 68, 210, 447
TspRI CASTG 5 cut(s) 236, 351, 468, 640, 1227
Vha464I CTTAAG 1 cut(s) 614
VpaK11BI GGWCC 1 cut(s) 1279
XapI RAATTY 2 cut(s) 331, 662
XceI RCATGY 2 cut(s) 674, 813
XmiI GTMKAC 1 cut(s) 705
XspI CTAG 6 cut(s) 177, 543, 800, 974, 984, 1239
ZrmI AGTACT 1 cut(s) 643
Zsp2I ATGCAT 1 cut(s) 763
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.