pycom12g16000

DUF761-associated sequence motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0011783
Physical Location & Seq
Reverse (-)
18450709 .. 18452443
1735 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1455 bp
ATGGCTGACAGCAACACGTTGAAAGGTCAATTTGTTGTTCCCATCCTCTCTATATTTCTAGTTCCTAATGTGAACTCAACGACCAAAGTCTTCAATCCTTCCTTGATAAGCAACCAGCACCAATCACCCAAAAACCCCTCTCTCACTCCTAAAACACAACTTAAACTCTCTCTCTACAAATTTACAGTCATGAGTAGCAACTCAGTTCATCAGACCTCCGGCTGCTTCAATATCATTCTGCGCAGGCTTTTGTGCAATGGAAGCGTTCCGACTCATCCATCAGACCAAATTTCAGATTCTAACACAACCCAGCTCGCAAAACCCCCCAGAAAACAAAACCCTGATCCCAAAATTCAGTCTTCAGCTTCTGTCACGCCTGGAATCGTGGCAAGGCTGATGGGTTTGGACTCGTTGCCGGAAACAAATTGGGTTTCAAGAGGCCCGGACTTGGTCAGTCGGAGTAGGTCACTGAGTTTTGCAGATTACTTGATGGATTTCGACTCGAATGATCATCAGAATCACCAGCATCGAAGGGTTCGAACCTCGGTCTCTTTTCGCGAAGTCCCGGAGGTAATGAATCGTCAGAAGAGCAGCCATGATTTTGTGGTTGTGTATTTGGACAATGTGGGTGAGAAATCAAAGGAAGTTGGGTCGAAGGTGAAGAAATCCGAGTCGAGTTTTGGGGAGTTGAGGCAGGGGAAGAAGGAACAGAGGAACAGGAAGGACAAGGAGAAAAACAGAGAGAGTGGTGAGATTATGAAGGAGAAGAAGAAGGAGAAAATAGTAATGATAAAGCAAAACAAGAACATTTGTAGGTTAAAAGATGAGCCCAGAAGGGATTTTGGTGCCAAATCTTCGAAGAGTTCTAAAAATGGTGGTGCAAATTTGAAGGGGGAGAGAGAAAATATTGCAATGAAGAAAACAACCCAGAAGAAGAAAGTTGTGGTGGAACCAAGAATCAAGAAGAGAAAGCAGAAAATTGAAGCTGAAAAGGAAAAAGTGGCTGCAGATTTTCATGGTTCCTCAGAGAATGATACAAGTGTTGTTTCTGTTCCTGGCATTGATGACATTTTGATCGAGCATGAAGCTTGGTTATCAGGATATTCAATTCCCATGGATTTGAACTCTAAGGTGAAACCGTCGCCAAAAGCTCCTTTTAGTGACAGATCAGAAGTGAACGCAGCTAAAAGGAAAGATTTTGAGCCGATTAAGGAGGAAACCAGAGACTACGCAGAGCTGCTGGCTTCCAAAATCCAAAATTGGATGGAGGAGGATTTGAAAGAATCAAATTGGGTGGCCAAGAATGCGGTCGGGTTCAAAGGTTTCGAAGAAATCTGCGAGGAATTTGAAGGGCGGATTCTGGACATGCTAGTGCACCAGACCATTGATGAATATATTGAGATTTCTTATGAAAATATATGGGGAAATCTGTGGACTTGCAATGCTACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
VARLMGL

Protein Analysis

485

Amino Acids

54.83

Weight (kDa)

9.28

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
VARLMGL PF14383 125 - 142 4.1e-08 DUF761-associated sequence motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011783)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G01370
fragaria_vesca FvH4_6g11320 FvH4_6g11320
malus_domestica MD04G1154900.v1.1 MD12G1168500.v1.1
prunus_persica Prupe.6G278700_v2.0.a1
pyrus_communis pycom04g13970 pycom12g16000
rosa_chinensis RchiOBHm_Chr3g0462881
rosa_laevigata RLG00000024826
rosa_multiflora Rmu_sc0000766.1_g000014 Rmu_sc0000766.1_g000015
rosa_roxburghii Rroxscaffold_6G00417130
rosa_rugosa Rorug03G0059600
rosa_samantha Rh3AG117900 Rh3BG121700 Rh3CG124600 Rh3DG123300
rosa_wichuraiana Rw3G010000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 242
AccB1I GGYRCC 1 cut(s) 845
AccII CGCG 1 cut(s) 558
AciI CCGC 2 cut(s) 1307, 1354
AclWI GGATC 1 cut(s) 338
AcoI YGGCCR 1 cut(s) 1296
AcsI RAATTY 5 cut(s) 179, 288, 351, 883, 1343
AcuI CTGAAG 1 cut(s) 345
AfiI CCNNNNNNNGG 1 cut(s) 448
AflIII ACRYGT 1 cut(s) 15
AjnI CCWGG 2 cut(s) 376, 1054
AluBI AGCT 7 cut(s) 313, 365, 986, 1088, 1151, 1184, 1237
AluI AGCT 7 cut(s) 313, 365, 986, 1088, 1151, 1184, 1237
Alw21I GWGCWC 1 cut(s) 1377
Alw26I GTCTC 2 cut(s) 553, 1218
Alw44I GTGCAC 1 cut(s) 1373
AlwI GGATC 1 cut(s) 338
AlwNI CAGNNNCTG 1 cut(s) 368
AoxI GGCC 2 cut(s) 439, 1296
ApaLI GTGCAC 1 cut(s) 1373
ApeKI GCWGC 5 cut(s) 222, 591, 1004, 1181, 1237
ApoI RAATTY 5 cut(s) 179, 288, 351, 883, 1343
ArsI GACNNNNNNTTYG 2 cut(s) 171, 203
AspLEI GCGC 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 440
AsuC2I CCSGG 2 cut(s) 443, 566
AsuHPI GGTGA 6 cut(s) 117, 512, 641, 670, 761, 1144
AsuII TTCGAA 3 cut(s) 538, 857, 1326
BaeGI GKGCMC 1 cut(s) 1377
BaeI ACNNNNGTAYC 2 cut(s) 1026, 1059
BalI TGGCCA 1 cut(s) 1298
BanI GGYRCC 1 cut(s) 845
BanII GRGCYC 1 cut(s) 831
BbsI GAAGAC 2 cut(s) 82, 351
Bbv12I GWGCWC 1 cut(s) 1377
BbvI GCAGC 5 cut(s) 209, 603, 991, 1193, 1224
BccI CCATC 5 cut(s) 50, 286, 391, 484, 1258
BciT130I CCWGG 2 cut(s) 378, 1056
BclI TGATCA 1 cut(s) 508
BcnI CCSGG 2 cut(s) 443, 566
BcoDI GTCTC 2 cut(s) 553, 1218
BfaI CTAG 2 cut(s) 59, 1370
BfmI CTRYAG 1 cut(s) 1005
BisI GCNGC 5 cut(s) 223, 592, 1005, 1182, 1238
BlsI GCNGC 5 cut(s) 224, 593, 1006, 1183, 1239
Bme1390I CCNGG 4 cut(s) 378, 443, 566, 1056
BmgT120I GGNCC 1 cut(s) 440
BmiI GGNNCC 3 cut(s) 847, 951, 1021
BmrFI CCNGG 4 cut(s) 378, 443, 566, 1056
BmsI GCATC 1 cut(s) 535
BoxI GACNNNNGTC 1 cut(s) 86
BpiI GAAGAC 2 cut(s) 82, 351
Bpu14I TTCGAA 3 cut(s) 538, 857, 1326
BpuMI CCSGG 2 cut(s) 443, 566
BsaI GGTCTC 1 cut(s) 553
BsaJI CCNNGG 2 cut(s) 543, 1113
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse3DI GCAATG 3 cut(s) 262, 918, 1447
BseBI CCWGG 2 cut(s) 378, 1056
BseDI CCNNGG 2 cut(s) 543, 1113
BseGI GGATG 3 cut(s) 42, 274, 1269
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMI GCAATG 3 cut(s) 262, 918, 1447
BseMII CTCAG 3 cut(s) 216, 461, 1038
BseRI GAGGAG 1 cut(s) 1283
BseSI GKGCMC 1 cut(s) 1377
BseXI GCAGC 5 cut(s) 209, 603, 991, 1193, 1224
BseYI CCCAGC 1 cut(s) 309
Bsh1236I CGCG 1 cut(s) 558
Bsh1285I CGRYCG 1 cut(s) 1311
BshFI GGCC 2 cut(s) 441, 1298
BshNI GGYRCC 1 cut(s) 845
BsiEI CGRYCG 1 cut(s) 1311
BsiHKAI GWGCWC 1 cut(s) 1377
BsiSI CCGG 4 cut(s) 219, 416, 443, 566
BslFI GGGAC 1 cut(s) 548
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 2 cut(s) 553, 1218
BsmFI GGGAC 1 cut(s) 548
BsmI GAATGC 1 cut(s) 1309
BsnI GGCC 2 cut(s) 441, 1298
Bso31I GGTCTC 1 cut(s) 553
Bsp119I TTCGAA 3 cut(s) 538, 857, 1326
Bsp1286I GDGCHC 2 cut(s) 831, 1377
Bsp143I GATC 4 cut(s) 343, 508, 1074, 1166
Bsp19I CCATGG 1 cut(s) 1113
Bsp68I TCGCGA 1 cut(s) 558
BspACI CCGC 2 cut(s) 1307, 1354
BspANI GGCC 2 cut(s) 441, 1298
BspCNI CTCAG 3 cut(s) 215, 462, 1037
BspFNI CGCG 1 cut(s) 558
BspHI TCATGA 1 cut(s) 189
BspLI GGNNCC 3 cut(s) 847, 951, 1021
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 1 cut(s) 338
BspQI GCTCTTC 1 cut(s) 581
BspT104I TTCGAA 3 cut(s) 538, 857, 1326
BspT107I GGYRCC 1 cut(s) 845
BspTNI GGTCTC 1 cut(s) 553
BsrDI GCAATG 3 cut(s) 262, 918, 1447
BssECI CCNNGG 2 cut(s) 543, 1113
BssMI GATC 4 cut(s) 343, 508, 1074, 1166
BssT1I CCWWGG 1 cut(s) 1113
Bst2UI CCWGG 2 cut(s) 378, 1056
Bst4CI ACNGT 2 cut(s) 187, 1140
Bst6I CTCTTC 3 cut(s) 581, 854, 959
BstBI TTCGAA 3 cut(s) 538, 857, 1326
BstC8I GCNNGC 3 cut(s) 245, 315, 1242
BstDEI CTNAG 4 cut(s) 202, 470, 1024, 1128
BstDSI CCRYGG 1 cut(s) 1113
BstF5I GGATG 3 cut(s) 42, 274, 1269
BstFNI CGCG 1 cut(s) 558
BstHHI GCGC 1 cut(s) 243
BstKTI GATC 4 cut(s) 346, 511, 1077, 1169
BstMAI GTCTC 2 cut(s) 553, 1218
BstMBI GATC 4 cut(s) 343, 508, 1074, 1166
BstMCI CGRYCG 1 cut(s) 1311
BstMWI GCNNNNNNNGC 2 cut(s) 261, 1304
BstNI CCWGG 2 cut(s) 378, 1056
BstNSI RCATGY 1 cut(s) 1369
BstPAI GACNNNNGTC 1 cut(s) 86
BstSCI CCNGG 4 cut(s) 376, 441, 564, 1054
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 1377
BstUI CGCG 1 cut(s) 558
BstV1I GCAGC 5 cut(s) 209, 603, 991, 1193, 1224
BstV2I GAAGAC 2 cut(s) 82, 351
BsuRI GGCC 2 cut(s) 441, 1298
BtgI CCRYGG 1 cut(s) 1113
BtsCI GGATG 3 cut(s) 42, 274, 1269
BtsIMutI CAGTG 1 cut(s) 467
BtuMI TCGCGA 1 cut(s) 558
Cac8I GCNNGC 3 cut(s) 245, 315, 1242
CaiI CAGNNNCTG 1 cut(s) 368
CciI TCATGA 1 cut(s) 189
CfoI GCGC 1 cut(s) 243
Cfr13I GGNCC 1 cut(s) 440
CspCI CAANNNNNGTGG 2 cut(s) 1275, 1310
CviAII CATG 6 cut(s) 190, 596, 1016, 1082, 1114, 1366
DdeI CTNAG 4 cut(s) 202, 470, 1024, 1128
DpnI GATC 4 cut(s) 345, 510, 1076, 1168
DpnII GATC 4 cut(s) 343, 508, 1074, 1166
EaeI YGGCCR 1 cut(s) 1296
Eam1104I CTCTTC 3 cut(s) 581, 854, 959
EarI CTCTTC 3 cut(s) 581, 854, 959
EciI GGCGGA 1 cut(s) 1369
Eco130I CCWWGG 1 cut(s) 1113
Eco24I GRGCYC 1 cut(s) 831
Eco31I GGTCTC 1 cut(s) 553
Eco57I CTGAAG 1 cut(s) 345
EcoRII CCWGG 2 cut(s) 376, 1054
EcoT14I CCWWGG 1 cut(s) 1113
EcoT38I GRGCYC 1 cut(s) 831
ErhI CCWWGG 1 cut(s) 1113
FaeI CATG 6 cut(s) 193, 599, 1019, 1085, 1117, 1369
FaqI GGGAC 1 cut(s) 548
FatI CATG 6 cut(s) 189, 595, 1015, 1081, 1113, 1365
FbaI TGATCA 1 cut(s) 508
Fnu4HI GCNGC 5 cut(s) 223, 592, 1005, 1182, 1238
FokI GGATG 3 cut(s) 29, 261, 1276
FriOI GRGCYC 1 cut(s) 831
Fsp4HI GCNGC 5 cut(s) 223, 592, 1005, 1182, 1238
FspBI CTAG 2 cut(s) 59, 1370
FspI TGCGCA 1 cut(s) 242
GlaI GCGC 1 cut(s) 242
GluI GCNGC 5 cut(s) 223, 592, 1005, 1182, 1238
GsaI CCCAGC 1 cut(s) 313
HaeIII GGCC 2 cut(s) 441, 1298
HapII CCGG 4 cut(s) 219, 416, 443, 566
HhaI GCGC 1 cut(s) 243
Hin1II CATG 6 cut(s) 193, 599, 1019, 1085, 1117, 1369
Hin6I GCGC 1 cut(s) 241
HinP1I GCGC 1 cut(s) 241
HindIII AAGCTT 1 cut(s) 1086
HpaII CCGG 4 cut(s) 219, 416, 443, 566
HphI GGTGA 6 cut(s) 117, 512, 641, 670, 761, 1144
Hpy166II GTNNAC 4 cut(s) 73, 1177, 1375, 1434
Hpy188III TCNNGA 6 cut(s) 190, 435, 557, 961, 1098, 1361
Hpy8I GTNNAC 4 cut(s) 73, 1177, 1375, 1434
Hpy99I CGWCG 1 cut(s) 1144
HpyCH4III ACNGT 2 cut(s) 187, 1140
HpyCH4IV ACGT 1 cut(s) 17
HpyCH4V TGCA 7 cut(s) 255, 479, 881, 911, 1007, 1375, 1440
HpyF10VI GCNNNNNNNGC 2 cut(s) 261, 1304
HpyF3I CTNAG 4 cut(s) 202, 470, 1024, 1128
HpySE526I ACGT 1 cut(s) 17
Hsp92II CATG 6 cut(s) 193, 599, 1019, 1085, 1117, 1369
HspAI GCGC 1 cut(s) 241
Ksp22I TGATCA 1 cut(s) 508
Kzo9I GATC 4 cut(s) 343, 508, 1074, 1166
LguI GCTCTTC 1 cut(s) 581
LmnI GCTCC 1 cut(s) 1156
Lsp1109I GCAGC 5 cut(s) 209, 603, 991, 1193, 1224
LweI GCATC 1 cut(s) 535
MaeI CTAG 2 cut(s) 59, 1370
MaeII ACGT 1 cut(s) 17
MaeIII GTNAC 3 cut(s) 370, 465, 1160
MalI GATC 4 cut(s) 345, 510, 1076, 1168
MboI GATC 4 cut(s) 343, 508, 1074, 1166
MhlI GDGCHC 2 cut(s) 831, 1377
MlsI TGGCCA 1 cut(s) 1298
MluNI TGGCCA 1 cut(s) 1298
MlyI GAGTC 4 cut(s) 265, 401, 494, 680
MmeI TCCRAC 2 cut(s) 293, 437
Mox20I TGGCCA 1 cut(s) 1298
MscI TGGCCA 1 cut(s) 1298
MseI TTAA 3 cut(s) 162, 818, 1209
MslI CAYNNNNRTG 1 cut(s) 1370
Msp20I TGGCCA 1 cut(s) 1298
MspI CCGG 4 cut(s) 219, 416, 443, 566
MspR9I CCNGG 4 cut(s) 378, 443, 566, 1056
Mva1269I GAATGC 1 cut(s) 1309
MvaI CCWGG 2 cut(s) 378, 1056
MvnI CGCG 1 cut(s) 558
MwoI GCNNNNNNNGC 2 cut(s) 261, 1304
NciI CCSGG 2 cut(s) 443, 566
NcoI CCATGG 1 cut(s) 1113
NdeII GATC 4 cut(s) 343, 508, 1074, 1166
NlaIII CATG 6 cut(s) 193, 599, 1019, 1085, 1117, 1369
NlaIV GGNNCC 3 cut(s) 847, 951, 1021
NmuCI GTSAC 3 cut(s) 370, 465, 1160
NruI TCGCGA 1 cut(s) 558
NsbI TGCGCA 1 cut(s) 242
NspI RCATGY 1 cut(s) 1369
NspV TTCGAA 3 cut(s) 538, 857, 1326
PagI TCATGA 1 cut(s) 189
PciSI GCTCTTC 1 cut(s) 581
PcsI WCGNNNNNNNCGW 1 cut(s) 535
PctI GAATGC 1 cut(s) 1309
PfeI GAWTC 7 cut(s) 296, 381, 517, 577, 957, 1283, 1357
PflFI GACNNNGTC 1 cut(s) 449
PfoI TCCNGGA 1 cut(s) 564
PkrI GCNGC 5 cut(s) 224, 593, 1006, 1183, 1239
PleI GAGTC 4 cut(s) 265, 401, 494, 679
PpsI GAGTC 4 cut(s) 265, 401, 494, 679
PshAI GACNNNNGTC 1 cut(s) 86
Psp6I CCWGG 2 cut(s) 376, 1054
PspFI CCCAGC 1 cut(s) 309
PspGI CCWGG 2 cut(s) 376, 1054
PspN4I GGNNCC 3 cut(s) 847, 951, 1021
PspPI GGNCC 1 cut(s) 440
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 1 cut(s) 368
PsyI GACNNNGTC 1 cut(s) 449
RruI TCGCGA 1 cut(s) 558
RseI CAYNNNNRTG 1 cut(s) 1370
SapI GCTCTTC 1 cut(s) 581
SaqAI TTAA 3 cut(s) 162, 818, 1209
SatI GCNGC 5 cut(s) 223, 592, 1005, 1182, 1238
Sau3AI GATC 4 cut(s) 343, 508, 1074, 1166
Sau96I GGNCC 1 cut(s) 440
SchI GAGTC 4 cut(s) 265, 401, 494, 680
ScrFI CCNGG 4 cut(s) 378, 443, 566, 1056
SduI GDGCHC 2 cut(s) 831, 1377
SfaNI GCATC 1 cut(s) 535
SfcI CTRYAG 1 cut(s) 1005
SfuI TTCGAA 3 cut(s) 538, 857, 1326
SmiMI CAYNNNNRTG 1 cut(s) 1370
SsiI CCGC 2 cut(s) 1307, 1354
SspI AATATT 1 cut(s) 907
SspMI CTAG 2 cut(s) 59, 1370
StyD4I CCNGG 4 cut(s) 376, 441, 564, 1054
StyI CCWWGG 1 cut(s) 1113
TaaI ACNGT 2 cut(s) 187, 1140
TaiI ACGT 1 cut(s) 20
TaqI TCGA 9 cut(s) 498, 503, 529, 538, 653, 674, 857, 1077, 1326
TaqII GACCGA 1 cut(s) 535
TfiI GAWTC 7 cut(s) 296, 381, 517, 577, 957, 1283, 1357
Tru1I TTAA 3 cut(s) 162, 818, 1209
Tru9I TTAA 3 cut(s) 162, 818, 1209
TscAI CASTG 1 cut(s) 474
TseFI GTSAC 3 cut(s) 370, 465, 1160
TseI GCWGC 5 cut(s) 222, 591, 1004, 1181, 1237
Tsp45I GTSAC 3 cut(s) 370, 465, 1160
TspDTI ATGAA 8 cut(s) 197, 590, 773, 929, 1004, 1098, 1404, 1425
TspRI CASTG 1 cut(s) 474
Tth111I GACNNNGTC 1 cut(s) 449
VneI GTGCAC 1 cut(s) 1373
XapI RAATTY 5 cut(s) 179, 288, 351, 883, 1343
XceI RCATGY 1 cut(s) 1369
XspI CTAG 2 cut(s) 59, 1370
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.