pycom12g19300

Solute carrier family 40 member 3

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0011217
Physical Location & Seq
Forward (+)
21186711 .. 21189153
2443 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1074 bp
ATGGCTTTGGGTTGCGGTTGTGGGGTTACTCTCTCACAGTATTCTCTCTCCAATTCATCTACTAGCTTATTTTCTGCTTGCCGTGCTTCTGTTTTATCGAGGCAACCACGGCCTTCCTCTCGAATTCGCTATCGAATCGATTCTCGCAGGTGGTTGGGTTTGAGGCAACTATCTGTGGGCTCTCAGAGGTTCAACAGTTTTAGTTCAAGGTGCTCAATAACCAACACCGATGCACACTTCAGCCACGTGGCAACTGACAATGAGGTCCAGGAGGAATCATCCATTGCAGAGCCTGGTTGCTCTAGTTGCTCGGTCCCAATTGTTGATATGCTGGACACCGAATCTTTGAGTTTACTAACTGAAGATACTTATGTAGATTGTCTTTTGACGACACTGCCAGTTTTATCAAAAGAGGAGCAACATACACTTGCAGCTACTCCGGCCCATCCAATGGGATTATATGCTTTTTATGCTAGTTGTCTAGCTGGAAATTTAGTGGAGCAATTTTGGAATTTCGCTTGGCCCTCTGCTATCGCATTGATATATCCAAGCCTTCTACCTGTGGCGTTCATAGGTTTCTTTAGTAAGCTTGCGATAATTGCTGGAGGCCCCTTAGTTGGCACACTTATCGATCATTTCCCCAGAGTACCCGCGTGTAACTGTCTTAATATTATCCAGGCAGCTGCTCAGATGTTATCTGCAGCGATGATAATCCATGCGCATTGTGTTCCTCCTTCTGCGTCATCCCTTCTTCACCGCCCTTGGTTCATTGTACTTGTACTAGCTGGGGCTGTAGAGAGGCTATCTGGTGCCGCATTGGGGGTCGCTATGGAGCGTGATTGGGTGGTGCTGTTGGCAGGAGTGAACAGGCCTATTGCGCTTGCCCAAGCAAATGCTGTTCTTTATCGAATTGATCTTCTCTGTGAGATTGCTGGAGCATCCCTATTTGGCATTCTTCTATCAAAGTATGACCCAGTAACATGTTTGAAATTTTCGGGAGGTTTGATGGTGTGGTCGTTGCCTTTTGCCTGTTCTCACATGTTTGACCAACAAGCTTTCAAGTGGGGTTCTTGA

Protein Analysis

358

Amino Acids

38.57

Weight (kDa)

6.49

Isoelectric Point (pI)

45.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FPN1 PF06963 153 - 343 8.1e-53 Ferroportin1 (FPN1)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011217)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G26820
fragaria_vesca FvH4_6g07510 FvH4_6g07510
malus_domestica MD04G1193000.v1.1 MD12G1205200.v1.1
prunus_persica Prupe.6G312300_v2.0.a1
pyrus_communis pycom04g17030 pycom12g19300
rosa_chinensis RchiOBHm_Chr3g0457221
rosa_laevigata RLG00000025242
rosa_multiflora Rmu_co8479255.1_g000001 Rmu_sc0000488.1_g000027 Rmu_sc0016647.1_g000001
rosa_roxburghii Rroxscaffold_6G00422100
rosa_rugosa Rorug03G0019400
rosa_samantha Rh3AG079300 Rh3BG081000 Rh3CG081300 Rh3DG083000
rosa_wichuraiana Rw3G006830

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 138
AasI GACNNNNNNGTC 1 cut(s) 263
Acc16I TGCGCA 1 cut(s) 720
Acc36I ACCTGC 1 cut(s) 138
AccB1I GGYRCC 1 cut(s) 809
AccB7I CCANNNNNTGG 1 cut(s) 451
AccII CGCG 1 cut(s) 653
AciI CCGC 4 cut(s) 15, 651, 757, 813
AcsI RAATTY 4 cut(s) 123, 490, 511, 989
AcuI CTGAAG 2 cut(s) 223, 381
AcvI CACGTG 1 cut(s) 247
AfaI GTAC 3 cut(s) 648, 774, 780
AfiI CCNNNNNNNGG 3 cut(s) 451, 617, 819
AflIII ACRYGT 2 cut(s) 980, 1038
AgsI TTSAA 4 cut(s) 193, 207, 988, 1060
AjnI CCWGG 3 cut(s) 267, 292, 675
AluBI AGCT 7 cut(s) 66, 434, 485, 589, 683, 785, 1055
AluI AGCT 7 cut(s) 66, 434, 485, 589, 683, 785, 1055
Alw21I GWGCWC 1 cut(s) 215
AlwNI CAGNNNCTG 1 cut(s) 293
AoxI GGCC 5 cut(s) 110, 441, 521, 607, 869
ApeKI GCWGC 4 cut(s) 431, 680, 683, 701
ApoI RAATTY 4 cut(s) 123, 490, 511, 989
Asp700I GAANNNNTTC 1 cut(s) 139
AspLEI GCGC 2 cut(s) 721, 880
AspS9I GGNCC 5 cut(s) 265, 313, 442, 522, 608
AsuHPI GGTGA 1 cut(s) 746
AvaII GGWCC 2 cut(s) 265, 313
BaeI ACNNNNGTAYC 2 cut(s) 357, 390
BanI GGYRCC 1 cut(s) 809
BanII GRGCYC 1 cut(s) 182
BbrPI CACGTG 1 cut(s) 247
Bbv12I GWGCWC 1 cut(s) 215
BbvI GCAGC 4 cut(s) 443, 670, 692, 713
BccI CCATC 2 cut(s) 453, 1000
BceAI ACGGC 2 cut(s) 66, 125
BcgI CGANNNNNNTGC 2 cut(s) 610, 644
BciT130I CCWGG 3 cut(s) 269, 294, 677
BfaI CTAG 5 cut(s) 63, 303, 474, 482, 782
BfmI CTRYAG 2 cut(s) 699, 792
BfuAI ACCTGC 1 cut(s) 138
BisI GCNGC 5 cut(s) 432, 681, 684, 702, 813
BlsI GCNGC 5 cut(s) 433, 682, 685, 703, 814
Bme1390I CCNGG 3 cut(s) 269, 294, 677
Bme18I GGWCC 2 cut(s) 265, 313
BmgT120I GGNCC 5 cut(s) 265, 313, 442, 522, 608
BmiI GGNNCC 3 cut(s) 315, 610, 811
BmrFI CCNGG 3 cut(s) 269, 294, 677
BmrI ACTGGG 1 cut(s) 968
BmsI GCATC 2 cut(s) 220, 947
BmuI ACTGGG 1 cut(s) 968
BpmI CTGGAG 2 cut(s) 624, 954
Bsa29I ATCGAT 2 cut(s) 138, 630
BsaAI YACGTR 1 cut(s) 247
BsaBI GATNNNNATC 1 cut(s) 710
BsaJI CCNNGG 2 cut(s) 107, 761
Bsc4I CCNNNNNNNGG 3 cut(s) 451, 617, 819
Bse1I ACTGG 2 cut(s) 398, 974
Bse3DI GCAATG 1 cut(s) 282
Bse8I GATNNNNATC 1 cut(s) 710
BseBI CCWGG 3 cut(s) 269, 294, 677
BseCI ATCGAT 2 cut(s) 138, 630
BseDI CCNNGG 2 cut(s) 107, 761
BseGI GGATG 4 cut(s) 278, 445, 743, 938
BseJI GATNNNNATC 1 cut(s) 710
BseLI CCNNNNNNNGG 3 cut(s) 451, 617, 819
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 197, 701
BseNI ACTGG 2 cut(s) 398, 974
BseRI GAGGAG 1 cut(s) 428
BseXI GCAGC 4 cut(s) 443, 670, 692, 713
BseYI CCCAGC 1 cut(s) 785
Bsh1236I CGCG 1 cut(s) 653
BshFI GGCC 5 cut(s) 112, 443, 523, 609, 871
BshNI GGYRCC 1 cut(s) 809
BshVI ATCGAT 2 cut(s) 138, 630
BsiHKAI GWGCWC 1 cut(s) 215
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 299
BslI CCNNNNNNNGG 3 cut(s) 451, 617, 819
BsmFI GGGAC 1 cut(s) 299
BsmI GAATGC 1 cut(s) 951
BsnI GGCC 5 cut(s) 112, 443, 523, 609, 871
Bsp1286I GDGCHC 2 cut(s) 182, 215
Bsp143I GATC 2 cut(s) 631, 913
BspACI CCGC 4 cut(s) 15, 651, 757, 813
BspANI GGCC 5 cut(s) 112, 443, 523, 609, 871
BspCNI CTCAG 2 cut(s) 196, 700
BspDI ATCGAT 2 cut(s) 138, 630
BspFNI CGCG 1 cut(s) 653
BspLI GGNNCC 3 cut(s) 315, 610, 811
BspMAI CTGCAG 1 cut(s) 703
BspMI ACCTGC 1 cut(s) 138
BspT107I GGYRCC 1 cut(s) 809
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 2 cut(s) 398, 974
BssECI CCNNGG 2 cut(s) 107, 761
BssMI GATC 2 cut(s) 631, 913
BssT1I CCWWGG 1 cut(s) 761
Bst2UI CCWGG 3 cut(s) 269, 294, 677
Bst4CI ACNGT 3 cut(s) 39, 197, 662
BstBAI YACGTR 1 cut(s) 247
BstC8I GCNNGC 3 cut(s) 79, 591, 882
BstDEI CTNAG 3 cut(s) 183, 613, 687
BstDSI CCRYGG 1 cut(s) 107
BstF5I GGATG 4 cut(s) 278, 445, 743, 938
BstFNI CGCG 1 cut(s) 653
BstHHI GCGC 2 cut(s) 721, 880
BstKTI GATC 2 cut(s) 634, 916
BstMBI GATC 2 cut(s) 631, 913
BstMWI GCNNNNNNNGC 7 cut(s) 83, 109, 306, 440, 470, 599, 877
BstNI CCWGG 3 cut(s) 269, 294, 677
BstNSI RCATGY 2 cut(s) 984, 1042
BstSCI CCNGG 3 cut(s) 267, 292, 675
BstSFI CTRYAG 2 cut(s) 699, 792
BstUI CGCG 1 cut(s) 653
BstV1I GCAGC 4 cut(s) 443, 670, 692, 713
Bsu15I ATCGAT 2 cut(s) 138, 630
BsuRI GGCC 5 cut(s) 112, 443, 523, 609, 871
BsuTUI ATCGAT 2 cut(s) 138, 630
BtgI CCRYGG 1 cut(s) 107
BtgZI GCGATG 1 cut(s) 719
BtsCI GGATG 4 cut(s) 278, 445, 743, 938
BtsI GCAGTG 1 cut(s) 392
BtsIMutI CAGTG 1 cut(s) 392
BveI ACCTGC 1 cut(s) 138
Cac8I GCNNGC 3 cut(s) 79, 591, 882
CaiI CAGNNNCTG 1 cut(s) 293
CfoI GCGC 2 cut(s) 721, 880
Cfr13I GGNCC 5 cut(s) 265, 313, 442, 522, 608
ClaI ATCGAT 2 cut(s) 138, 630
CseI GACGC 1 cut(s) 729
Csp6I GTAC 3 cut(s) 647, 773, 779
CviAII CATG 3 cut(s) 716, 981, 1039
CviQI GTAC 3 cut(s) 647, 773, 779
DdeI CTNAG 3 cut(s) 183, 613, 687
DpnI GATC 2 cut(s) 633, 915
DpnII GATC 2 cut(s) 631, 913
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
Eco130I CCWWGG 1 cut(s) 761
Eco147I AGGCCT 1 cut(s) 871
Eco24I GRGCYC 1 cut(s) 182
Eco47I GGWCC 2 cut(s) 265, 313
Eco57I CTGAAG 2 cut(s) 223, 381
Eco72I CACGTG 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 608
EcoRI GAATTC 1 cut(s) 123
EcoRII CCWGG 3 cut(s) 267, 292, 675
EcoT14I CCWWGG 1 cut(s) 761
EcoT38I GRGCYC 1 cut(s) 182
ErhI CCWWGG 1 cut(s) 761
FaeI CATG 3 cut(s) 719, 984, 1042
FaqI GGGAC 1 cut(s) 299
FatI CATG 3 cut(s) 715, 980, 1038
FauI CCCGC 1 cut(s) 658
Fnu4HI GCNGC 5 cut(s) 432, 681, 684, 702, 813
FokI GGATG 4 cut(s) 265, 432, 730, 925
FriOI GRGCYC 1 cut(s) 182
Fsp4HI GCNGC 5 cut(s) 432, 681, 684, 702, 813
FspAI RTGCGCAY 1 cut(s) 720
FspBI CTAG 5 cut(s) 63, 303, 474, 482, 782
FspI TGCGCA 1 cut(s) 720
GlaI GCGC 2 cut(s) 720, 879
GluI GCNGC 5 cut(s) 432, 681, 684, 702, 813
GsaI CCCAGC 1 cut(s) 789
GsuI CTGGAG 2 cut(s) 624, 954
HaeIII GGCC 5 cut(s) 112, 443, 523, 609, 871
HapII CCGG 1 cut(s) 440
HgaI GACGC 1 cut(s) 729
HhaI GCGC 2 cut(s) 721, 880
Hin1II CATG 3 cut(s) 719, 984, 1042
Hin6I GCGC 2 cut(s) 719, 878
HinP1I GCGC 2 cut(s) 719, 878
HindIII AAGCTT 2 cut(s) 587, 1053
HinfI GANTC 4 cut(s) 135, 140, 275, 341
HpaII CCGG 1 cut(s) 440
HphI GGTGA 1 cut(s) 746
Hpy166II GTNNAC 2 cut(s) 353, 865
Hpy188I TCNGA 2 cut(s) 186, 690
Hpy188III TCNNGA 3 cut(s) 120, 996, 1071
Hpy8I GTNNAC 2 cut(s) 353, 865
HpyAV CCTTC 4 cut(s) 123, 563, 744, 758
HpyCH4III ACNGT 3 cut(s) 39, 197, 662
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 4 cut(s) 233, 287, 431, 701
HpyF10VI GCNNNNNNNGC 7 cut(s) 83, 109, 306, 440, 470, 599, 877
HpyF3I CTNAG 3 cut(s) 183, 613, 687
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 719, 984, 1042
HspAI GCGC 2 cut(s) 719, 878
Kzo9I GATC 2 cut(s) 631, 913
LmnI GCTCC 4 cut(s) 415, 499, 832, 935
Lsp1109I GCAGC 4 cut(s) 443, 670, 692, 713
LweI GCATC 2 cut(s) 220, 947
MaeI CTAG 5 cut(s) 63, 303, 474, 482, 782
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 3 cut(s) 25, 656, 976
MalI GATC 2 cut(s) 633, 915
MboI GATC 2 cut(s) 631, 913
MboII GAAGA 4 cut(s) 374, 743, 908, 947
MfeI CAATTG 1 cut(s) 318
MhlI GDGCHC 2 cut(s) 182, 215
MluCI AATT 9 cut(s) 52, 123, 318, 490, 503, 511, 597, 909, 989
MroXI GAANNNNTTC 1 cut(s) 139
MseI TTAA 1 cut(s) 666
MspA1I CMGCKG 1 cut(s) 683
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 3 cut(s) 269, 294, 677
MunI CAATTG 1 cut(s) 318
Mva1269I GAATGC 1 cut(s) 951
MvaI CCWGG 3 cut(s) 269, 294, 677
MvnI CGCG 1 cut(s) 653
MwoI GCNNNNNNNGC 7 cut(s) 83, 109, 306, 440, 470, 599, 877
NdeII GATC 2 cut(s) 631, 913
NlaIII CATG 3 cut(s) 719, 984, 1042
NlaIV GGNNCC 3 cut(s) 315, 610, 811
NsbI TGCGCA 1 cut(s) 720
NspI RCATGY 2 cut(s) 984, 1042
PaqCI CACCTGC 1 cut(s) 138
PceI AGGCCT 1 cut(s) 871
PciI ACATGT 2 cut(s) 980, 1038
PctI GAATGC 1 cut(s) 951
PdmI GAANNNNTTC 1 cut(s) 139
PfeI GAWTC 4 cut(s) 135, 140, 275, 341
PflMI CCANNNNNTGG 1 cut(s) 451
PfoI TCCNGGA 1 cut(s) 267
PkrI GCNGC 5 cut(s) 433, 682, 685, 703, 814
PmaCI CACGTG 1 cut(s) 247
PmlI CACGTG 1 cut(s) 247
Ppu21I YACGTR 1 cut(s) 247
PscI ACATGT 2 cut(s) 980, 1038
Psp6I CCWGG 3 cut(s) 267, 292, 675
PspCI CACGTG 1 cut(s) 247
PspFI CCCAGC 1 cut(s) 785
PspGI CCWGG 3 cut(s) 267, 292, 675
PspN4I GGNNCC 3 cut(s) 315, 610, 811
PspPI GGNCC 5 cut(s) 265, 313, 442, 522, 608
PstI CTGCAG 1 cut(s) 703
PstNI CAGNNNCTG 1 cut(s) 293
PvuII CAGCTG 1 cut(s) 683
RsaI GTAC 3 cut(s) 648, 774, 780
RsaNI GTAC 3 cut(s) 647, 773, 779
SaqAI TTAA 1 cut(s) 666
SatI GCNGC 5 cut(s) 432, 681, 684, 702, 813
Sau3AI GATC 2 cut(s) 631, 913
Sau96I GGNCC 5 cut(s) 265, 313, 442, 522, 608
ScrFI CCNGG 3 cut(s) 269, 294, 677
SduI GDGCHC 2 cut(s) 182, 215
SfaNI GCATC 2 cut(s) 220, 947
SfcI CTRYAG 2 cut(s) 699, 792
SinI GGWCC 2 cut(s) 265, 313
Sse9I AATT 9 cut(s) 52, 123, 318, 490, 503, 511, 597, 909, 989
SseBI AGGCCT 1 cut(s) 871
SsiI CCGC 4 cut(s) 15, 651, 757, 813
SspI AATATT 1 cut(s) 670
SspMI CTAG 5 cut(s) 63, 303, 474, 482, 782
StuI AGGCCT 1 cut(s) 871
StyD4I CCNGG 3 cut(s) 267, 292, 675
StyI CCWWGG 1 cut(s) 761
TaaI ACNGT 3 cut(s) 39, 197, 662
TaiI ACGT 1 cut(s) 249
TaqI TCGA 6 cut(s) 98, 121, 133, 138, 630, 907
TaqII GACCGA 1 cut(s) 301
TasI AATT 9 cut(s) 52, 123, 318, 490, 503, 511, 597, 909, 989
TatI WGTACW 2 cut(s) 772, 778
TauI GCSGC 1 cut(s) 815
TfiI GAWTC 4 cut(s) 135, 140, 275, 341
Tru1I TTAA 1 cut(s) 666
Tru9I TTAA 1 cut(s) 666
TscAI CASTG 1 cut(s) 399
TseI GCWGC 4 cut(s) 431, 680, 683, 701
TspDTI ATGAA 3 cut(s) 45, 559, 757
TspRI CASTG 1 cut(s) 399
Van91I CCANNNNNTGG 1 cut(s) 451
VpaK11BI GGWCC 2 cut(s) 265, 313
XapI RAATTY 4 cut(s) 123, 490, 511, 989
XceI RCATGY 2 cut(s) 984, 1042
XmnI GAANNNNTTC 1 cut(s) 139
XspI CTAG 5 cut(s) 63, 303, 474, 482, 782
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.