pycom12g19540

Domain of unknown function (DUF3511)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0016061
Physical Location & Seq
Reverse (-)
21347899 .. 21348279
381 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 381 bp
ATGGATGAGATTCGATATCGCTCGTATGTAACTGCTGACTGCCGGAACAACCTAGAGATGGTGAACGTGAGGAGGTTAAGCGAAAACCAGACAATGTACGCGGGGAGGTCACATTTTCATCCGTCATGGGATCCGAATCCCCCCATGAAAATACGACAATGCAGCAATCTTCAAGTGCGGGTCGGGGGAACGAAGGCGAGGAAAGAGAGATCGTCGTCGACGAAGTCGTTGAAATTGTGGTGGAACGATCCGGAGATTAAGAGAAGAGGACGAGTGGCTAGGTATAAGTTGTATGGTGCCGAAGGGAAGGTCAAGAGGTCCTTGAAGAAAGGATACCGTTGGTTCAAGAAGAAATGTCTCGAGATTGTACGTACCATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3511

Protein Analysis

127

Amino Acids

15.02

Weight (kDa)

10.54

Isoelectric Point (pI)

49.41

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3511 PF12023 81 - 124 2.9e-21 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016061)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05725
fragaria_vesca FvH4_6g07171
malus_domestica MD04G1195600.v1.1 MD12G1207900.v1.1
prunus_persica Prupe.6G315400_v2.0.a1
pyrus_communis pycom12g19540
rosa_chinensis RchiOBHm_Chr3g0456821
rosa_laevigata RLG00000025276
rosa_multiflora Rmu_sc0000133.1_g000021 Rmu_sc0011688.1_g000008
rosa_roxburghii Rroxscaffold_6G00422470
rosa_rugosa Rorug03G0016000
rosa_samantha Rh3AG076300 Rh3DG080000
rosa_wichuraiana Rw3G006550

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 296
AccI GTMKAC 1 cut(s) 218
AccII CGCG 1 cut(s) 101
AccIII TCCGGA 1 cut(s) 250
AciI CCGC 2 cut(s) 101, 178
AclWI GGATC 3 cut(s) 125, 138, 242
AfaI GTAC 3 cut(s) 98, 369, 373
AfiI CCNNNNNNNGG 1 cut(s) 58
AgsI TTSAA 4 cut(s) 173, 232, 325, 346
Alw26I GTCTC 1 cut(s) 362
AlwI GGATC 3 cut(s) 125, 138, 242
Ama87I CYCGRG 1 cut(s) 359
Aor13HI TCCGGA 1 cut(s) 250
ApeKI GCWGC 1 cut(s) 162
ArsI GACNNNNNNTTYG 2 cut(s) 294, 326
AspS9I GGNCC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 73
AvaI CYCGRG 1 cut(s) 359
AvaII GGWCC 1 cut(s) 318
BamHI GGATCC 1 cut(s) 130
BanI GGYRCC 1 cut(s) 296
BarI GAAGNNNNNNTAC 2 cut(s) 317, 349
BbvI GCAGC 1 cut(s) 174
BccI CCATC 1 cut(s) 52
BciVI GTATCC 1 cut(s) 326
BcoDI GTCTC 1 cut(s) 362
BfaI CTAG 2 cut(s) 53, 279
BfuI GTATCC 1 cut(s) 326
BisI GCNGC 1 cut(s) 163
BlsI GCNGC 1 cut(s) 164
Bme18I GGWCC 1 cut(s) 318
BmeT110I CYCGRG 1 cut(s) 359
BmgT120I GGNCC 1 cut(s) 318
BmiI GGNNCC 2 cut(s) 132, 298
BsaAI YACGTR 1 cut(s) 371
BsaBI GATNNNNATC 1 cut(s) 135
BsaWI WCCGGW 1 cut(s) 250
Bsc4I CCNNNNNNNGG 1 cut(s) 58
Bse8I GATNNNNATC 1 cut(s) 135
BseAI TCCGGA 1 cut(s) 250
BseGI GGATG 2 cut(s) 10, 118
BseJI GATNNNNATC 1 cut(s) 135
BseLI CCNNNNNNNGG 1 cut(s) 58
BseRI GAGGAG 1 cut(s) 85
BseXI GCAGC 1 cut(s) 174
Bsh1236I CGCG 1 cut(s) 101
BshNI GGYRCC 1 cut(s) 296
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 2 cut(s) 43, 251
BslI CCNNNNNNNGG 1 cut(s) 58
BsmAI GTCTC 1 cut(s) 362
BsoBI CYCGRG 1 cut(s) 359
Bsp13I TCCGGA 1 cut(s) 250
Bsp143I GATC 3 cut(s) 130, 209, 247
BspACI CCGC 2 cut(s) 101, 178
BspEI TCCGGA 1 cut(s) 250
BspFNI CGCG 1 cut(s) 101
BspLI GGNNCC 2 cut(s) 132, 298
BspPI GGATC 3 cut(s) 125, 138, 242
BspT107I GGYRCC 1 cut(s) 296
BssMI GATC 3 cut(s) 130, 209, 247
Bst4CI ACNGT 1 cut(s) 338
Bst6I CTCTTC 1 cut(s) 259
BstBAI YACGTR 1 cut(s) 371
BstF5I GGATG 2 cut(s) 10, 118
BstFNI CGCG 1 cut(s) 101
BstKTI GATC 3 cut(s) 133, 212, 250
BstMAI GTCTC 1 cut(s) 362
BstMBI GATC 3 cut(s) 130, 209, 247
BstSNI TACGTA 1 cut(s) 371
BstUI CGCG 1 cut(s) 101
BstV1I GCAGC 1 cut(s) 174
BstX2I RGATCY 1 cut(s) 130
BstYI RGATCY 1 cut(s) 130
BsuI GTATCC 1 cut(s) 326
BtsCI GGATG 2 cut(s) 10, 118
Cfr13I GGNCC 1 cut(s) 318
Csp6I GTAC 3 cut(s) 97, 368, 372
CviAII CATG 2 cut(s) 126, 145
CviJI RGCY 1 cut(s) 278
CviKI_1 RGCY 1 cut(s) 278
CviQI GTAC 3 cut(s) 97, 368, 372
DpnI GATC 3 cut(s) 132, 211, 249
DpnII GATC 3 cut(s) 130, 209, 247
Eam1104I CTCTTC 1 cut(s) 259
EarI CTCTTC 1 cut(s) 259
Eco105I TACGTA 1 cut(s) 371
Eco32I GATATC 1 cut(s) 17
Eco47I GGWCC 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 359
EcoO109I RGGNCCY 1 cut(s) 318
EcoRV GATATC 1 cut(s) 17
FaeI CATG 2 cut(s) 129, 148
FaiI YATR 5 cut(s) 27, 127, 146, 285, 294
FalI AAGNNNNNCTT 2 cut(s) 305, 337
FatI CATG 2 cut(s) 125, 144
FauI CCCGC 2 cut(s) 94, 171
FblI GTMKAC 1 cut(s) 218
Fnu4HI GCNGC 1 cut(s) 163
FokI GGATG 2 cut(s) 17, 105
Fsp4HI GCNGC 1 cut(s) 163
FspBI CTAG 2 cut(s) 53, 279
GluI GCNGC 1 cut(s) 163
HapII CCGG 2 cut(s) 43, 251
Hin1II CATG 2 cut(s) 129, 148
HincII GTYRAC 1 cut(s) 219
HindII GTYRAC 1 cut(s) 219
HinfI GANTC 2 cut(s) 10, 136
HpaII CCGG 2 cut(s) 43, 251
HphI GGTGA 1 cut(s) 73
Hpy166II GTNNAC 2 cut(s) 64, 219
Hpy188I TCNGA 1 cut(s) 135
Hpy188III TCNNGA 5 cut(s) 251, 313, 346, 359, 361
Hpy8I GTNNAC 2 cut(s) 64, 219
Hpy99I CGWCG 3 cut(s) 217, 220, 223
HpyAV CCTTC 3 cut(s) 187, 296, 301
HpyCH4III ACNGT 1 cut(s) 338
HpyCH4IV ACGT 2 cut(s) 66, 370
HpyCH4V TGCA 1 cut(s) 162
HpySE526I ACGT 2 cut(s) 66, 370
Hsp92II CATG 2 cut(s) 129, 148
Kpn2I TCCGGA 1 cut(s) 250
Kzo9I GATC 3 cut(s) 130, 209, 247
LpnPI CCDG 3 cut(s) 56, 101, 264
Lsp1109I GCAGC 1 cut(s) 174
MaeI CTAG 2 cut(s) 53, 279
MaeII ACGT 2 cut(s) 66, 370
MaeIII GTNAC 2 cut(s) 28, 108
MalI GATC 3 cut(s) 132, 211, 249
MboI GATC 3 cut(s) 130, 209, 247
MboII GAAGA 4 cut(s) 161, 276, 337, 361
MflI RGATCY 1 cut(s) 130
MluCI AATT 1 cut(s) 233
MnlI CCTC 6 cut(s) 63, 66, 99, 192, 260, 309
MroI TCCGGA 1 cut(s) 250
MseI TTAA 2 cut(s) 77, 258
MspI CCGG 2 cut(s) 43, 251
MvnI CGCG 1 cut(s) 101
NdeII GATC 3 cut(s) 130, 209, 247
NlaIII CATG 2 cut(s) 129, 148
NlaIV GGNNCC 2 cut(s) 132, 298
NmuCI GTSAC 1 cut(s) 108
PaeR7I CTCGAG 1 cut(s) 359
PcsI WCGNNNNNNNCGW 2 cut(s) 218, 224
PfeI GAWTC 2 cut(s) 10, 136
PflFI GACNNNGTC 1 cut(s) 223
PkrI GCNGC 1 cut(s) 164
Ppu21I YACGTR 1 cut(s) 371
PpuMI RGGWCCY 1 cut(s) 318
Psp5II RGGWCCY 1 cut(s) 318
PspN4I GGNNCC 2 cut(s) 132, 298
PspPI GGNCC 1 cut(s) 318
PspPPI RGGWCCY 1 cut(s) 318
PsuI RGATCY 1 cut(s) 130
PsyI GACNNNGTC 1 cut(s) 223
RsaI GTAC 3 cut(s) 98, 369, 373
RsaNI GTAC 3 cut(s) 97, 368, 372
SalI GTCGAC 1 cut(s) 217
SaqAI TTAA 2 cut(s) 77, 258
SatI GCNGC 1 cut(s) 163
Sau3AI GATC 3 cut(s) 130, 209, 247
Sau96I GGNCC 1 cut(s) 318
SetI ASST 8 cut(s) 54, 69, 77, 110, 284, 312, 320, 373
Sfr274I CTCGAG 1 cut(s) 359
SgrDI CGTCGACG 1 cut(s) 217
SinI GGWCC 1 cut(s) 318
SlaI CTCGAG 1 cut(s) 359
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
SnaBI TACGTA 1 cut(s) 371
Sse9I AATT 1 cut(s) 233
SsiI CCGC 2 cut(s) 101, 178
SspMI CTAG 2 cut(s) 53, 279
TaaI ACNGT 1 cut(s) 338
TaiI ACGT 2 cut(s) 69, 373
TaqI TCGA 3 cut(s) 13, 218, 360
TasI AATT 1 cut(s) 233
TfiI GAWTC 2 cut(s) 10, 136
Tru1I TTAA 2 cut(s) 77, 258
Tru9I TTAA 2 cut(s) 77, 258
TseFI GTSAC 1 cut(s) 108
TseI GCWGC 1 cut(s) 162
Tsp45I GTSAC 1 cut(s) 108
TspDTI ATGAA 2 cut(s) 107, 161
TspGWI ACGGA 1 cut(s) 111
Tth111I GACNNNGTC 1 cut(s) 223
VpaK11BI GGWCC 1 cut(s) 318
XhoI CTCGAG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 218
XspI CTAG 2 cut(s) 53, 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.