Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0007842

Physical Location & Seq

Genomic Coordinates Reverse (-)

21570636 .. 21571067

Gene Structure 432 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTGCCACTGAAGGACATAGTGCCAGCAGCACAGAACAACATAAACACGAGGTTCATACTTTTGGACAAAGGCATCGTCAAGACTACAACTACTACTTTATCACAAGCCCAAAACAAGACGTGCTTGGCCCTGGTGGCGGATGAAACAGCGGCGGTTCACTTCCAGCTGTGGGGGAACGAGTGTGACGCCTTCGAGCCTGGGGACATCGTGGAGTTGAGCAATGGCATATTCTCTTACTGCAGGAACAACCTTTTGCTCAGGGCTGGCAAGAGAGGCAAAATTGAGAAGGTTGGGGAATTTATGATGGCGTACGTTGAGACCCCAAATTTGAGTGAGATTCGTTGGGCTCCTGACCCTAACAATCCCAAGAAGTACATTCAGGAGGCTGTGATTTCCCCACATTCTCGTATATTTCCACCCAAATACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

144

Amino Acids

16.02

Weight (kDa)

7.7

Isoelectric Point (pI)

39.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007842)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63690 AT5G63690
fragaria_vesca	FvH4_2g24470 FvH4_2g24470 FvH4_2g24470 FvH4_2g24470
malus_domestica	MD04G1200100.v1.1 MD12G1212600.v1.1
prunus_persica	Prupe.3G123100_v2.0.a1 Prupe.8G250400_v2.0.a1 Prupe.8G268000_v2.0.a1
pyrus_communis	pycom04g17660 pycom12g19880
rosa_chinensis	RchiOBHm_Chr6g0292311
rosa_laevigata	RLG00000012043
rosa_multiflora	Rmu_sc0001354.1_g000001 Rmu_sc0020608.1_g000001
rosa_roxburghii	Rroxscaffold_7G00175220
rosa_rugosa	Rorug06G0225400
rosa_samantha	Rh6AG338800 Rh6BG345900 Rh6CG353000 Rh6DG338800
rosa_wichuraiana	Rw6G029490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	4
AciI	CCGC	3 cut(s)	140, 152, 155
AcsI	RAATTY	2 cut(s)	299, 328
AcuI	CTGAAG	1 cut(s)	32
AcyI	GRCGYC	1 cut(s)	189
AfaI	GTAC	2 cut(s)	314, 377
AfiI	CCNNNNNNNGG	2 cut(s)	139, 172
AjiI	CACGTC	1 cut(s)	123
AjnI	CCWGG	2 cut(s)	132, 199
AluBI	AGCT	1 cut(s)	169
AluI	AGCT	1 cut(s)	169
Alw26I	GTCTC	1 cut(s)	314
AoxI	GGCC	1 cut(s)	129
ApeKI	GCWGC	1 cut(s)	29
ApoI	RAATTY	2 cut(s)	299, 328
ArsI	GACNNNNNNTTYG	4 cut(s)	63, 95, 313, 345
AspS9I	GGNCC	1 cut(s)	130
BanI	GGYRCC	1 cut(s)	4
BanII	GRGCYC	1 cut(s)	352
BauI	CACGAG	1 cut(s)	49
BbvI	GCAGC	1 cut(s)	41
BccI	CCATC	1 cut(s)	301
BciT130I	CCWGG	2 cut(s)	134, 201
BcoDI	GTCTC	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	241
BglI	GCCNNNNNGGC	1 cut(s)	137
BisI	GCNGC	2 cut(s)	30, 153
BlsI	GCNGC	2 cut(s)	31, 154
Bme1390I	CCNGG	2 cut(s)	134, 201
BmgBI	CACGTC	1 cut(s)	123
BmgT120I	GGNCC	1 cut(s)	130
BmiI	GGNNCC	2 cut(s)	6, 351
BmrFI	CCNGG	2 cut(s)	134, 201
BmsI	GCATC	1 cut(s)	84
Bpu10I	CCTNAGC	1 cut(s)	260
BsaHI	GRCGYC	1 cut(s)	189
BsaI	GGTCTC	1 cut(s)	314
BsaJI	CCNNGG	2 cut(s)	132, 200
Bsc4I	CCNNNNNNNGG	2 cut(s)	139, 172
Bse3DI	GCAATG	1 cut(s)	229
BseBI	CCWGG	2 cut(s)	134, 201
BseDI	CCNNGG	2 cut(s)	132, 200
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	139, 172
BseMI	GCAATG	1 cut(s)	229
BseMII	CTCAG	1 cut(s)	274
BseXI	GCAGC	1 cut(s)	41
BshFI	GGCC	1 cut(s)	131
BshNI	GGYRCC	1 cut(s)	4
BsiWI	CGTACG	1 cut(s)	312
BslFI	GGGAC	1 cut(s)	218
BslI	CCNNNNNNNGG	2 cut(s)	139, 172
BsmAI	GTCTC	1 cut(s)	314
BsmFI	GGGAC	1 cut(s)	218
BsnI	GGCC	1 cut(s)	131
Bso31I	GGTCTC	1 cut(s)	314
Bsp1286I	GDGCHC	1 cut(s)	352
BspACI	CCGC	3 cut(s)	140, 152, 155
BspANI	GGCC	1 cut(s)	131
BspCNI	CTCAG	1 cut(s)	273
BspLI	GGNNCC	2 cut(s)	6, 351
BspMAI	CTGCAG	1 cut(s)	245
BspT107I	GGYRCC	1 cut(s)	4
BspTNI	GGTCTC	1 cut(s)	314
BsrDI	GCAATG	1 cut(s)	229
BssECI	CCNNGG	2 cut(s)	132, 200
BssNI	GRCGYC	1 cut(s)	189
BssSI	CACGAG	1 cut(s)	49
Bst2BI	CACGAG	1 cut(s)	49
Bst2UI	CCWGG	2 cut(s)	134, 201
BstACI	GRCGYC	1 cut(s)	189
BstC8I	GCNNGC	2 cut(s)	27, 268
BstDEI	CTNAG	1 cut(s)	260
BstF5I	GGATG	1 cut(s)	148
BstMAI	GTCTC	1 cut(s)	314
BstMWI	GCNNNNNNNGC	2 cut(s)	137, 276
BstNI	CCWGG	2 cut(s)	134, 201
BstSCI	CCNGG	2 cut(s)	132, 199
BstSFI	CTRYAG	1 cut(s)	241
BstV1I	GCAGC	1 cut(s)	41
BsuRI	GGCC	1 cut(s)	131
BtrI	CACGTC	1 cut(s)	123
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	8
Cac8I	GCNNGC	2 cut(s)	27, 268
Cfr13I	GGNCC	1 cut(s)	130
CseI	GACGC	1 cut(s)	197
Csp6I	GTAC	2 cut(s)	313, 376
CviJI	RGCY	7 cut(s)	110, 131, 169, 199, 266, 350, 389
CviKI_1	RGCY	7 cut(s)	110, 131, 169, 199, 266, 350, 389
CviQI	GTAC	2 cut(s)	313, 376
DdeI	CTNAG	1 cut(s)	260
EciI	GGCGGA	1 cut(s)	155
Eco24I	GRGCYC	1 cut(s)	352
Eco31I	GGTCTC	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	32
EcoRII	CCWGG	2 cut(s)	132, 199
EcoT38I	GRGCYC	1 cut(s)	352
FaiI	YATR	6 cut(s)	20, 44, 59, 230, 305, 413
FalI	AAGNNNNNCTT	2 cut(s)	110, 142
FaqI	GGGAC	1 cut(s)	218
Fnu4HI	GCNGC	2 cut(s)	30, 153
FokI	GGATG	1 cut(s)	155
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	2 cut(s)	30, 153
GluI	GCNGC	2 cut(s)	30, 153
HaeIII	GGCC	1 cut(s)	131
HgaI	GACGC	1 cut(s)	197
Hin1I	GRCGYC	1 cut(s)	189
HinfI	GANTC	1 cut(s)	340
Hpy166II	GTNNAC	1 cut(s)	160
Hpy188III	TCNNGA	3 cut(s)	82, 353, 383
Hpy8I	GTNNAC	1 cut(s)	160
HpyAV	CCTTC	3 cut(s)	7, 202, 283
HpyCH4IV	ACGT	2 cut(s)	122, 315
HpyCH4V	TGCA	1 cut(s)	243
HpyF10VI	GCNNNNNNNGC	2 cut(s)	137, 276
HpyF3I	CTNAG	1 cut(s)	260
HpySE526I	ACGT	2 cut(s)	122, 315
Hsp92I	GRCGYC	1 cut(s)	189
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	1 cut(s)	41
LweI	GCATC	1 cut(s)	84
MaeII	ACGT	2 cut(s)	122, 315
MaeIII	GTNAC	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	352
MluCI	AATT	3 cut(s)	282, 299, 328
MnlI	CCTC	3 cut(s)	45, 269, 379
MspA1I	CMGCKG	2 cut(s)	152, 169
MspR9I	CCNGG	2 cut(s)	134, 201
MvaI	CCWGG	2 cut(s)	134, 201
MwoI	GCNNNNNNNGC	2 cut(s)	137, 276
NlaIV	GGNNCC	2 cut(s)	6, 351
NmuCI	GTSAC	1 cut(s)	185
PfeI	GAWTC	1 cut(s)	340
Pfl23II	CGTACG	1 cut(s)	312
PkrI	GCNGC	2 cut(s)	31, 154
Psp6I	CCWGG	2 cut(s)	132, 199
PspGI	CCWGG	2 cut(s)	132, 199
PspLI	CGTACG	1 cut(s)	312
PspN4I	GGNNCC	2 cut(s)	6, 351
PspPI	GGNCC	1 cut(s)	130
PstI	CTGCAG	1 cut(s)	245
PvuII	CAGCTG	1 cut(s)	169
RsaI	GTAC	2 cut(s)	314, 377
RsaNI	GTAC	2 cut(s)	313, 376
SatI	GCNGC	2 cut(s)	30, 153
Sau96I	GGNCC	1 cut(s)	130
ScrFI	CCNGG	2 cut(s)	134, 201
SduI	GDGCHC	1 cut(s)	352
SetI	ASST	6 cut(s)	56, 125, 171, 255, 294, 318
SfaNI	GCATC	1 cut(s)	84
SfcI	CTRYAG	1 cut(s)	241
Sse9I	AATT	3 cut(s)	282, 299, 328
SsiI	CCGC	3 cut(s)	140, 152, 155
StyD4I	CCNGG	2 cut(s)	132, 199
TaiI	ACGT	2 cut(s)	125, 318
TaqI	TCGA	1 cut(s)	195
TasI	AATT	3 cut(s)	282, 299, 328
TatI	WGTACW	1 cut(s)	375
TauI	GCSGC	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	340
TscAI	CASTG	1 cut(s)	15
TseFI	GTSAC	1 cut(s)	185
TseI	GCWGC	1 cut(s)	29
Tsp45I	GTSAC	1 cut(s)	185
TspDTI	ATGAA	2 cut(s)	46, 159
TspRI	CASTG	1 cut(s)	15
XapI	RAATTY	2 cut(s)	299, 328

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.