pycom12g23650

UDP-arabinopyranose mutase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0008599
Physical Location & Seq
Reverse (-)
24148958 .. 24150013
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1056 bp
ATGTCTGATTCAAGCATCAACCCTAGTGAGGTTGACATCGTGATTGCCGCAATCAACTCCGACCTGACACCATTCTTGAATGAATGGAGACCAATATTCTCCCCGTTCCATCTGATTATTGTCAAAGACCCTGATATGGATGGGGAGCTCCATGTTCCAGAAGGATTTAACGTGGATGTCTTTACCAAGTCTGACATAAACCAGATGGTGGGCTCTTCCCATTCCATTCTCTTCTCTGGTTACTCATGCAGATATTTTGGTTATCTAGTCTCAAGGAAAAAATATATTATCTCAATTGATGATGATTGCGTCCCGGCTAAGGACAACAATGGTCATATAGTAGATTTAGTGGCACAGCATATTGCCAATCTCAAAGCTCCAGCTACCCCGTTCTTTTTTAACACACTCTATGATCCGTACCTGAAGGGAGCAGATTTTGTTCGTGGTTACCCATTTAGCCTGAGGAGTGGGGTTACATGTGCACTATCGTGTGGACTGTGGCTCAATTTGGCAGACTATGATGCACCAACACAGGCCCTCAAGCCAGAGCAGAGGAATTCTCGATATGTGGATGCTGTAATGACTGTTCCGGTGAGATCCTTAATGCCTGTAAGTGGAATCAACATTGCGTTTGACCGTGAGGTGGTGGGACCAGCTTTATTTCCAGCGTTGAGGTTGTCGGCAGAAGGAAAGATCAGGTGGGAGACAGTGGAAGATATATGGTCCGGAATGTGTGTGAAGGTCATATGCGATCACCTGGGAATTGGTGTAAAAACTGGGATTCCTTATCTATGGAGAAAGGAAAGAGGCGACGCCATTGAAAGCTTGAAGAAAGAGTGGGAGGGTGTGAAGCTGATGGAGGAAGTGGTTCCTTTCTTTCAGTCAGTTAGGTTACCACGATCAGCCGTGACAGCAGAAGACTGTGTTGTCGACATGGCAAAGGCGGTGAAAGAGCAGTTGGGAAAGGTAGATCCTATGTTTGTTCGTGCAGGTGATGCCATGGCAGATTGGGTGAAGCTCTGGAAGTCGGTGGGATCCAGCACACCGGGAGTTTAA

Protein Analysis

352

Amino Acids

38.99

Weight (kDa)

5.35

Isoelectric Point (pI)

38.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RGP PF03214 7 - 345 6.5e-185 Reversibly glycosylated polypeptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 980
AasI GACNNNNNNGTC 1 cut(s) 926
Acc36I ACCTGC 1 cut(s) 980
AccB7I CCANNNNNTGG 1 cut(s) 208
AccI GTMKAC 1 cut(s) 930
AccIII TCCGGA 1 cut(s) 725
AciI CCGC 2 cut(s) 48, 944
AclWI GGATC 5 cut(s) 407, 591, 965, 1029, 1042
AcsI RAATTY 1 cut(s) 556
AcuI CTGAAG 1 cut(s) 443
AcyI GRCGYC 1 cut(s) 813
AfaI GTAC 1 cut(s) 419
AfiI CCNNNNNNNGG 6 cut(s) 28, 136, 208, 319, 614, 643
AflIII ACRYGT 1 cut(s) 476
AgsI TTSAA 4 cut(s) 12, 79, 821, 829
AjnI CCWGG 1 cut(s) 756
AjuI GAANNNNNNNTTGG 2 cut(s) 941, 973
AleI CACNNNNGTG 1 cut(s) 487
AluBI AGCT 7 cut(s) 148, 377, 383, 656, 825, 853, 1018
AluI AGCT 7 cut(s) 148, 377, 383, 656, 825, 853, 1018
Alw21I GWGCWC 2 cut(s) 150, 484
Alw26I GTCTC 3 cut(s) 82, 274, 698
Alw44I GTGCAC 1 cut(s) 480
AlwI GGATC 5 cut(s) 407, 591, 965, 1029, 1042
Aor13HI TCCGGA 1 cut(s) 725
AoxI GGCC 1 cut(s) 534
ApaLI GTGCAC 1 cut(s) 480
ApoI RAATTY 1 cut(s) 556
Asp700I GAANNNNTTC 1 cut(s) 867
AspS9I GGNCC 3 cut(s) 535, 650, 723
AsuC2I CCSGG 2 cut(s) 314, 1047
AsuHPI GGTGA 5 cut(s) 604, 746, 958, 1004, 1024
AvaII GGWCC 2 cut(s) 650, 723
AxyI CCTNAGG 1 cut(s) 461
BaeGI GKGCMC 1 cut(s) 484
BamHI GGATCC 1 cut(s) 1034
BanII GRGCYC 2 cut(s) 150, 215
BbsI GAAGAC 1 cut(s) 924
Bbv12I GWGCWC 2 cut(s) 150, 484
BccI CCATC 4 cut(s) 117, 134, 199, 850
BceAI ACGGC 1 cut(s) 890
BciT130I CCWGG 1 cut(s) 758
BcnI CCSGG 2 cut(s) 314, 1047
BcoDI GTCTC 3 cut(s) 82, 274, 698
BfaI CTAG 2 cut(s) 24, 266
BfuAI ACCTGC 1 cut(s) 980
BisI GCNGC 1 cut(s) 48
BlsI GCNGC 1 cut(s) 49
Bme1390I CCNGG 3 cut(s) 314, 758, 1047
Bme18I GGWCC 2 cut(s) 650, 723
BmgT120I GGNCC 3 cut(s) 535, 650, 723
BmiI GGNNCC 3 cut(s) 651, 870, 1036
BmrFI CCNGG 3 cut(s) 314, 758, 1047
BmrI ACTGGG 1 cut(s) 786
BmsI GCATC 4 cut(s) 24, 511, 562, 985
BmuI ACTGGG 1 cut(s) 786
BpiI GAAGAC 1 cut(s) 924
BplI GAGNNNNNCTC 2 cut(s) 544, 576
BpmI CTGGAG 1 cut(s) 363
Bpu10I CCTNAGC 1 cut(s) 318
BpuEI CTTGAG 2 cut(s) 256, 524
BpuMI CCSGG 2 cut(s) 314, 1047
BsaHI GRCGYC 1 cut(s) 813
BsaI GGTCTC 1 cut(s) 82
BsaJI CCNNGG 2 cut(s) 757, 999
BsaWI WCCGGW 2 cut(s) 589, 725
Bsc4I CCNNNNNNNGG 6 cut(s) 28, 136, 208, 319, 614, 643
Bse1I ACTGG 1 cut(s) 781
Bse21I CCTNAGG 1 cut(s) 461
Bse3DI GCAATG 1 cut(s) 624
BseAI TCCGGA 1 cut(s) 725
BseBI CCWGG 1 cut(s) 758
BseDI CCNNGG 2 cut(s) 757, 999
BseGI GGATG 3 cut(s) 145, 181, 577
BseLI CCNNNNNNNGG 6 cut(s) 28, 136, 208, 319, 614, 643
BseMI GCAATG 1 cut(s) 624
BseMII CTCAG 1 cut(s) 452
BseNI ACTGG 1 cut(s) 781
BseRI GAGGAG 1 cut(s) 478
BseSI GKGCMC 1 cut(s) 484
BsgI GTGCAG 1 cut(s) 1008
BshFI GGCC 1 cut(s) 536
BsiHKAI GWGCWC 2 cut(s) 150, 484
BsiSI CCGG 4 cut(s) 314, 590, 726, 1046
BslFI GGGAC 2 cut(s) 296, 663
BslI CCNNNNNNNGG 6 cut(s) 28, 136, 208, 319, 614, 643
BsmAI GTCTC 3 cut(s) 82, 274, 698
BsmFI GGGAC 2 cut(s) 296, 663
BsnI GGCC 1 cut(s) 536
Bso31I GGTCTC 1 cut(s) 82
Bsp1286I GDGCHC 3 cut(s) 150, 215, 484
Bsp13I TCCGGA 1 cut(s) 725
Bsp143I GATC 7 cut(s) 412, 596, 693, 751, 899, 970, 1034
Bsp19I CCATGG 1 cut(s) 999
BspACI CCGC 2 cut(s) 48, 944
BspANI GGCC 1 cut(s) 536
BspCNI CTCAG 1 cut(s) 453
BspEI TCCGGA 1 cut(s) 725
BspLI GGNNCC 3 cut(s) 651, 870, 1036
BspMI ACCTGC 1 cut(s) 980
BspPI GGATC 5 cut(s) 407, 591, 965, 1029, 1042
BspQI GCTCTTC 1 cut(s) 220
BspTNI GGTCTC 1 cut(s) 82
BsrDI GCAATG 1 cut(s) 624
BsrI ACTGG 1 cut(s) 781
BssECI CCNNGG 2 cut(s) 757, 999
BssMI GATC 7 cut(s) 412, 596, 693, 751, 899, 970, 1034
BssNI GRCGYC 1 cut(s) 813
BssT1I CCWWGG 1 cut(s) 999
Bst2UI CCWGG 1 cut(s) 758
Bst4CI ACNGT 5 cut(s) 498, 586, 638, 709, 923
Bst6I CTCTTC 2 cut(s) 220, 236
BstACI GRCGYC 1 cut(s) 813
BstAPI GCANNNNNTGC 1 cut(s) 995
BstDEI CTNAG 2 cut(s) 318, 461
BstDSI CCRYGG 1 cut(s) 999
BstEII GGTNACC 2 cut(s) 446, 891
BstF5I GGATG 3 cut(s) 145, 181, 577
BstKTI GATC 7 cut(s) 415, 599, 696, 754, 902, 973, 1037
BstMAI GTCTC 3 cut(s) 82, 274, 698
BstMBI GATC 7 cut(s) 412, 596, 693, 751, 899, 970, 1034
BstMWI GCNNNNNNNGC 2 cut(s) 911, 995
BstNI CCWGG 1 cut(s) 758
BstNSI RCATGY 1 cut(s) 480
BstPI GGTNACC 2 cut(s) 446, 891
BstSCI CCNGG 3 cut(s) 312, 756, 1045
BstSLI GKGCMC 1 cut(s) 484
BstV2I GAAGAC 1 cut(s) 924
BstX2I RGATCY 3 cut(s) 596, 970, 1034
BstYI RGATCY 3 cut(s) 596, 970, 1034
Bsu36I CCTNAGG 1 cut(s) 461
BsuRI GGCC 1 cut(s) 536
BtgI CCRYGG 1 cut(s) 999
BtsCI GGATG 3 cut(s) 145, 181, 577
BtsIMutI CAGTG 1 cut(s) 714
BveI ACCTGC 1 cut(s) 980
Cfr13I GGNCC 3 cut(s) 535, 650, 723
CseI GACGC 2 cut(s) 298, 821
Csp6I GTAC 1 cut(s) 418
CviAII CATG 5 cut(s) 152, 246, 477, 934, 1000
CviQI GTAC 1 cut(s) 418
DdeI CTNAG 2 cut(s) 318, 461
DpnI GATC 7 cut(s) 414, 598, 695, 753, 901, 972, 1036
DpnII GATC 7 cut(s) 412, 596, 693, 751, 899, 970, 1034
DrdI GACNNNNNNGTC 1 cut(s) 926
DseDI GACNNNNNNGTC 1 cut(s) 926
Eam1104I CTCTTC 2 cut(s) 220, 236
EarI CTCTTC 2 cut(s) 220, 236
Ecl136II GAGCTC 1 cut(s) 148
Eco130I CCWWGG 1 cut(s) 999
Eco24I GRGCYC 2 cut(s) 150, 215
Eco31I GGTCTC 1 cut(s) 82
Eco47I GGWCC 2 cut(s) 650, 723
Eco53kI GAGCTC 1 cut(s) 148
Eco57I CTGAAG 1 cut(s) 443
Eco81I CCTNAGG 1 cut(s) 461
Eco91I GGTNACC 2 cut(s) 446, 891
EcoICRI GAGCTC 1 cut(s) 148
EcoO109I RGGNCCY 1 cut(s) 535
EcoO65I GGTNACC 2 cut(s) 446, 891
EcoRI GAATTC 1 cut(s) 556
EcoRII CCWGG 1 cut(s) 756
EcoT14I CCWWGG 1 cut(s) 999
EcoT38I GRGCYC 2 cut(s) 150, 215
ErhI CCWWGG 1 cut(s) 999
FaeI CATG 5 cut(s) 155, 249, 480, 937, 1003
FaqI GGGAC 2 cut(s) 296, 663
FatI CATG 5 cut(s) 151, 245, 476, 933, 999
FauNDI CATATG 1 cut(s) 746
FblI GTMKAC 1 cut(s) 930
Fnu4HI GCNGC 1 cut(s) 48
FokI GGATG 3 cut(s) 152, 188, 584
FriOI GRGCYC 2 cut(s) 150, 215
Fsp4HI GCNGC 1 cut(s) 48
FspBI CTAG 2 cut(s) 24, 266
GluI GCNGC 1 cut(s) 48
GsuI CTGGAG 1 cut(s) 363
HaeIII GGCC 1 cut(s) 536
HapII CCGG 4 cut(s) 314, 590, 726, 1046
HgaI GACGC 2 cut(s) 298, 821
Hin1I GRCGYC 1 cut(s) 813
Hin1II CATG 5 cut(s) 155, 249, 480, 937, 1003
HincII GTYRAC 2 cut(s) 34, 931
HindII GTYRAC 2 cut(s) 34, 931
HindIII AAGCTT 1 cut(s) 823
HinfI GANTC 3 cut(s) 8, 618, 781
HpaII CCGG 4 cut(s) 314, 590, 726, 1046
HphI GGTGA 5 cut(s) 604, 746, 958, 1004, 1024
Hpy166II GTNNAC 4 cut(s) 34, 482, 494, 931
Hpy188I TCNGA 4 cut(s) 7, 61, 114, 193
Hpy188III TCNNGA 6 cut(s) 40, 76, 158, 561, 726, 1021
Hpy8I GTNNAC 4 cut(s) 34, 482, 494, 931
Hpy99I CGWCG 1 cut(s) 815
HpyAV CCTTC 4 cut(s) 155, 418, 680, 733
HpyCH4III ACNGT 5 cut(s) 498, 586, 638, 709, 923
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 4 cut(s) 249, 482, 524, 989
HpyF10VI GCNNNNNNNGC 2 cut(s) 911, 995
HpyF3I CTNAG 2 cut(s) 318, 461
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 1 cut(s) 813
Hsp92II CATG 5 cut(s) 155, 249, 480, 937, 1003
Kpn2I TCCGGA 1 cut(s) 725
Kzo9I GATC 7 cut(s) 412, 596, 693, 751, 899, 970, 1034
LguI GCTCTTC 1 cut(s) 220
LmnI GCTCC 4 cut(s) 145, 153, 382, 428
LweI GCATC 4 cut(s) 24, 511, 562, 985
MaeI CTAG 2 cut(s) 24, 266
MaeII ACGT 1 cut(s) 171
MaeIII GTNAC 5 cut(s) 239, 446, 472, 891, 907
MalI GATC 7 cut(s) 414, 598, 695, 753, 901, 972, 1036
MboI GATC 7 cut(s) 412, 596, 693, 751, 899, 970, 1034
MboII GAAGA 5 cut(s) 207, 223, 725, 841, 929
MfeI CAATTG 1 cut(s) 294
MflI RGATCY 3 cut(s) 596, 970, 1034
MhlI GDGCHC 3 cut(s) 150, 215, 484
MluCI AATT 4 cut(s) 294, 505, 556, 762
MmeI TCCRAC 1 cut(s) 84
MnlI CCTC 9 cut(s) 22, 456, 546, 548, 634, 666, 800, 835, 853
MroI TCCGGA 1 cut(s) 725
MroXI GAANNNNTTC 1 cut(s) 867
MseI TTAA 4 cut(s) 168, 399, 602, 1054
MslI CAYNNNNRTG 1 cut(s) 487
MspI CCGG 4 cut(s) 314, 590, 726, 1046
MspR9I CCNGG 3 cut(s) 314, 758, 1047
MunI CAATTG 1 cut(s) 294
MvaI CCWGG 1 cut(s) 758
MwoI GCNNNNNNNGC 2 cut(s) 911, 995
NciI CCSGG 2 cut(s) 314, 1047
NcoI CCATGG 1 cut(s) 999
NdeI CATATG 1 cut(s) 746
NdeII GATC 7 cut(s) 412, 596, 693, 751, 899, 970, 1034
NlaIII CATG 5 cut(s) 155, 249, 480, 937, 1003
NlaIV GGNNCC 3 cut(s) 651, 870, 1036
NmuCI GTSAC 1 cut(s) 907
NspI RCATGY 1 cut(s) 480
OliI CACNNNNGTG 1 cut(s) 487
PaqCI CACCTGC 1 cut(s) 980
PciI ACATGT 1 cut(s) 476
PciSI GCTCTTC 1 cut(s) 220
PdmI GAANNNNTTC 1 cut(s) 867
PfeI GAWTC 3 cut(s) 8, 618, 781
PflMI CCANNNNNTGG 1 cut(s) 208
PkrI GCNGC 1 cut(s) 49
PscI ACATGT 1 cut(s) 476
Psp124BI GAGCTC 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 756
PspEI GGTNACC 2 cut(s) 446, 891
PspGI CCWGG 1 cut(s) 756
PspN4I GGNNCC 3 cut(s) 651, 870, 1036
PspPI GGNCC 3 cut(s) 535, 650, 723
PsrI GAACNNNNNNTAC 2 cut(s) 570, 602
PsuI RGATCY 3 cut(s) 596, 970, 1034
RsaI GTAC 1 cut(s) 419
RsaNI GTAC 1 cut(s) 418
RseI CAYNNNNRTG 1 cut(s) 487
SacI GAGCTC 1 cut(s) 150
SalI GTCGAC 1 cut(s) 929
SapI GCTCTTC 1 cut(s) 220
SaqAI TTAA 4 cut(s) 168, 399, 602, 1054
SatI GCNGC 1 cut(s) 48
Sau3AI GATC 7 cut(s) 412, 596, 693, 751, 899, 970, 1034
Sau96I GGNCC 3 cut(s) 535, 650, 723
ScrFI CCNGG 3 cut(s) 314, 758, 1047
SduI GDGCHC 3 cut(s) 150, 215, 484
SfaNI GCATC 4 cut(s) 24, 511, 562, 985
SinI GGWCC 2 cut(s) 650, 723
SmiMI CAYNNNNRTG 1 cut(s) 487
SmlI CTYRAG 2 cut(s) 271, 539
SmoI CTYRAG 2 cut(s) 271, 539
Sse9I AATT 4 cut(s) 294, 505, 556, 762
SsiI CCGC 2 cut(s) 48, 944
SspI AATATT 1 cut(s) 96
SspMI CTAG 2 cut(s) 24, 266
SstI GAGCTC 1 cut(s) 150
StyD4I CCNGG 3 cut(s) 312, 756, 1045
StyI CCWWGG 1 cut(s) 999
TaaI ACNGT 5 cut(s) 498, 586, 638, 709, 923
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 562, 930
TasI AATT 4 cut(s) 294, 505, 556, 762
TauI GCSGC 1 cut(s) 50
TfiI GAWTC 3 cut(s) 8, 618, 781
Tru1I TTAA 4 cut(s) 168, 399, 602, 1054
Tru9I TTAA 4 cut(s) 168, 399, 602, 1054
TscAI CASTG 1 cut(s) 714
TseFI GTSAC 1 cut(s) 907
Tsp45I GTSAC 1 cut(s) 907
TspDTI ATGAA 1 cut(s) 96
TspGWI ACGGA 1 cut(s) 405
TspRI CASTG 1 cut(s) 714
Van91I CCANNNNNTGG 1 cut(s) 208
VneI GTGCAC 1 cut(s) 480
VpaK11BI GGWCC 2 cut(s) 650, 723
XapI RAATTY 1 cut(s) 556
XceI RCATGY 1 cut(s) 480
XmiI GTMKAC 1 cut(s) 930
XmnI GAANNNNTTC 1 cut(s) 867
XspI CTAG 2 cut(s) 24, 266
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.