Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0004515

Physical Location & Seq

Genomic Coordinates Forward (+)

24659067 .. 24666863

Gene Structure 7797 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2961 bp

ATGAGCGGTTTGGTGATGGCGATACTTCTCAAATTGGTTTGGAATTTGATGAGGACCTGTTTTTTGGCAAGGTTTCAGCTCAAGGGAATGATGGAATTTCAGATGATCGATCCTCAGACATTGGGCCAATCAGTAACACCTTTGGAAAAGCATGATATGTATGAGGGGATACCTGGAACCTCAGAAACCATGCAAATGAATGGGATTGAAAGCCAGAATGAAGTCCTGGCTGCAAATACTGATTTTGTCACATATGCTCAGGCTCCATCAACTCCTGGACTATTTGAAGAGCCAAATCTGTTTGCTGTTCAGGAACCTATGGCCTGCAATGATCAGTTGGATTTTGAAGACCATAATTTATCAAACCATAATTTATCAAACTTAGCATCCGTGGGCAACTCAGAAAATGCTGGTAGTATGTCAGGTCCGCGTTGTGGGGATGATAGTACCAAGGAGAATGGCTATCATTTGGGCGATATAGAGATCAAACAAGCAAGGCCACAGGAGCATGACCAAATTAAACCTTTTTCTCCAGTATTGGAATGTTCAAAGGGGACAGTTGGTGCATTGGATGGCCGAAACAGGGTGGAAGATATACATAATGGTATTGTGATAAACAATGAACCACTTATGCCCTGCCTAGATCAAAAGGATGACCAACATGTAGAACCTGCTGGAGTTAGGTTGGATGAAACTGATGCATCTCCTAGCTGCTCCCAGGTCACATCTGAGTTGGACGACCCTTCTCGTAAGATTTGTTCAAGTAGTAACTTTCCGAGAGTATCAGAGGATTATTTGGAGGATCAACAGACATATTTAAAGCCTGAAATACAGAATGATGTTGAAATTGCTAATAATATGGGAGAATCGTGCACACATATCATTACAGATCCTTTGAAGCCTGTTACGTATGAAGACACAGCAGCTGCTGAAGTGCCTGTGCTCCGGGCATGTGGCTCCCTCCCAAGTCATCATGATATACCATCTCCTACCGATAAAATTTCGGAAGTCCCTTGCAACTTACCATCTGAGGTTGTAGGGCCAACTTCATTGGAGAATGCAACATCTTTGGAGACTCAATTGGAGAACTTGGATAGATCGACCACTTCTAACTTGCCTGCACCTGAAAAGTTGCTCTCTGTACCAGAGGGGTTCACTTCTAAACCAAGTGATTTTATAGTAGAAACTACGCCTGAAAAAGAAGTCATAGTTGGGGATGCCGGTGATGGTGATGGGATTAAATTCATATCAGGGAAAAAACGTAGTTCCACAGAAAGTACAATGACAGTGCAGAGTTTAAATTCAGTTGAATCATTTGGGGTGGCCCGAGAAGAGAGAACTGCAGAATCTATCCCTGATGATGATGATTTATTGTCTTCTATTTTAGTTGGAAGAAGGTCTTCAGTTCTAAAAATGAAACCCACTCCGCCTGCACTTGAAATAATGTGCACAAAACGCTCAAGAACTGCTGTCCGTGGTACCTCTTCAAAGAGGAAAGTGCTAATGGATGATACAATGGTTTTGCATGGCGATCAAATACGCCAGCAGTTGACAAATACTGAAGACATACGTCGTGTGCGAAAAAAGGCTCCTTGTACTTGCCCAGAAATTTCAATGATTCAGCGACAATTTTTGGAAGATGCAATTTTCACTGAACCCATATTTACTGGCATGTCGGCGGAACTGATATATCTGCACACTGAAACATTTGATCTGAGCACAATCCGGGTTTCTGAAAATGATCAAAACAATGCTTCTATGGAGCCATTGAAGGATGTAGCATCCTCTCTGGAGCCAAATGCTACTAAAGAAATTGAACCCCTTCGAAGCACTGAACCTTTAATAGCGAGAGATGACACAGCAGCACAGCCTGCTGACATTGAGAACGAAAACCAGAAGGAAGATCATAACCTAAAGTCTCACCATACTGATGCTGAAGAACAAAGGATCAGTGACTTGGAAGAACTTAATACTTCCAAACATGAACACTTGGGAGAGATAGCTGAAATGGAAATTGACAAAGAAAATTTTGAAGTTGCTGATCCTGTTTTAGAAGATATTTACAAGGTGTCAGCTGATGTTAACGTCCAGTCAAGGCTTGTGGATAAAACTGAGGAGGAAAATGCATCACTGCAGATTGATGCATTATGCGGGTCACTAGACAATAAGTTGGACGCCCAACCCATGGAGGTGGACGCATTGATAGTGGAGTCAAGTATCCAGAAAGAAGTTGATGCCATTCAAGTTGTTGACCACAGTGTCGAAATCAGAGCGGATGTTCAGATAGGTGCATCTGAACTTATTGACAGTGTAGATGTTACGCTTGCAACTGGGGAATGCAAAAACCTCAGTTTTTCAACTGATCAATCTGTGGGAGAAATTGAAAACAGCGAGCAACATACTGTGAATGAAACTGAGGTCCTGGAGGCAAACTTGCATTGTGATGACAACCCAAACTCTTATTGTATTCATGGTGAAGACAACGAGAATGCTTCCTGGAATGGTAAGGAAAATCTAGGTTGCCGGGAGGTTGGTCCACGTAGCGGTATTGATGCAGAAGTCACTGCAGACCCCCCTCCAGAAGATCGTGGTGATTATGAAGATGTAGCTTTTGGAGATGATACAGAATTTTTGAATGTAGATGATGATGAAATAGCTGAAGATGTCGATGACATGCCATGCGCTGGAGATACTCGTCTTCTTGAGAATAGTGGATGGTCTTCCCGCACCAGGGCTGTTGCCAAGTATCTCCAGACTTTACTTTATAAGGAACCTGTGCATGGGAAAAAGGTTCTTGGGATGGACAGTTTATTAAATGGTAAAACTCGAAAGGAAGCATCAAGGATGTTTTTTGAAACATTGGTGCTTAAGACAAGGGATTACATCCATGTGGAACAGGCAAAGCCTTTTGACAACGTCTACATAGGACCTCAAGTAAAACTCATGAAATCAGAGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000278 GO:0000793 GO:0000794 GO:0000798 GO:0000819 GO:0003674 GO:0003682 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005730 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007059 GO:0007062 GO:0007275 GO:0008150 GO:0008152 GO:0008278 GO:0009553 GO:0009555 GO:0009561 GO:0009987 GO:0016043 GO:0022402 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048229 GO:0048856 GO:0050896 GO:0051276 GO:0051716 GO:0070013 GO:0070601 GO:0071704 GO:0071840 GO:0090304 GO:0098813 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko04110 ko04111 map04110 map04111

Pfam Domains

Protein Families

Rad21_Rec8 Rad21_Rec8_N

Protein Analysis

987

Amino Acids

108.99

Weight (kDa)

4.44

Isoelectric Point (pI)

46.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad21_Rec8	PF04824	931 - 979	7.4e-18	Conserved region of Rad21 / Rec8 like protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004515)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G16270
fragaria_vesca	FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010 FvH4_6g00010
malus_domestica	MD00G1016700.v1.1
prunus_persica	Prupe.6G366000_v2.0.a1 Prupe.6G366000_v2.0.a1
pyrus_communis	pycom04g22040 pycom10g04620 pycom12g24300
rosa_chinensis	RchiOBHm_Chr3g0447331
rosa_laevigata	RLG00000026010
rosa_multiflora	Rmu_ssc0000473.1_g000001
rosa_roxburghii	Rroxscaffold_6G00425510
rosa_rugosa	Rorug02G0599600.1 Rorug02G0599700.1 Rorug02G0599800.1 Rorug02G0599900
rosa_samantha	Rh3AG000300 Rh3BG000100 Rh3CG000100 Rh3DG000300 Rh5AG542800 Rh5AG542900
rosa_wichuraiana	Rw3G000010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2766
AasI	GACNNNNNNGTC	1 cut(s)	2258
Acc36I	ACCTGC	1 cut(s)	679
Acc65I	GGTACC	1 cut(s)	1478
AccB1I	GGYRCC	1 cut(s)	1478
AccB7I	CCANNNNNTGG	2 cut(s)	2185, 2684
AccBSI	CCGCTC	2 cut(s)	6, 2273
AccI	GTMKAC	1 cut(s)	2919
AccII	CGCG	1 cut(s)	430
AciI	CCGC	8 cut(s)	6, 428, 1427, 1679, 2151, 2273, 2544, 2725
AclWI	GGATC	5 cut(s)	104, 810, 884, 1955, 2036
AcoI	YGGCCR	1 cut(s)	574
AcsI	RAATTY	8 cut(s)	43, 95, 999, 1241, 1300, 1608, 2026, 2627
AcuI	CTGAAG	5 cut(s)	951, 1386, 1581, 1956, 2679
AcyI	GRCGYC	1 cut(s)	2175
AfaI	GTAC	5 cut(s)	448, 1143, 1279, 1480, 1597
AfiI	CCNNNNNNNGG	8 cut(s)	434, 583, 2185, 2543, 2684, 2730, 2731, 2780
AflII	CTTAAG	1 cut(s)	2867
AflIII	ACRYGT	1 cut(s)	661
AjnI	CCWGG	7 cut(s)	172, 225, 274, 717, 2421, 2495, 2729
AjuI	GAANNNNNNNTTGG	2 cut(s)	1194, 1226
AluBI	AGCT	7 cut(s)	79, 711, 926, 2003, 2075, 2609, 2657
AluI	AGCT	7 cut(s)	79, 711, 926, 2003, 2075, 2609, 2657
Alw21I	GWGCWC	4 cut(s)	875, 945, 1451, 1721
Alw26I	GTCTC	2 cut(s)	1067, 1923
Alw44I	GTGCAC	2 cut(s)	871, 1447
AlwI	GGATC	5 cut(s)	104, 810, 884, 1955, 2036
AlwNI	CAGNNNCTG	2 cut(s)	926, 929
Ama87I	CYCGRG	1 cut(s)	1326
AoxI	GGCC	6 cut(s)	124, 321, 497, 574, 1040, 1323
ApaLI	GTGCAC	2 cut(s)	871, 1447
ApeKI	GCWGC	5 cut(s)	230, 711, 923, 926, 1862
ApoI	RAATTY	8 cut(s)	43, 95, 999, 1241, 1300, 1608, 2026, 2627
ArsI	GACNNNNNNTTYG	2 cut(s)	46, 78
Asp700I	GAANNNNTTC	2 cut(s)	1399, 1821
Asp718I	GGTACC	1 cut(s)	1478
AspLEI	GCGC	1 cut(s)	2684
AspS9I	GGNCC	8 cut(s)	54, 124, 425, 1040, 1324, 2419, 2534, 2927
AsuC2I	CCSGG	3 cut(s)	947, 1727, 2525
AsuHPI	GGTGA	6 cut(s)	25, 1235, 1241, 1913, 2486, 2603
AsuII	TTCGAA	1 cut(s)	1825
AvaI	CYCGRG	1 cut(s)	1326
AvaII	GGWCC	5 cut(s)	54, 425, 2419, 2534, 2927
BaeGI	GKGCMC	2 cut(s)	875, 1451
BaeI	ACNNNNGTAYC	2 cut(s)	1503, 1536
BanI	GGYRCC	1 cut(s)	1478
BbsI	GAAGAC	8 cut(s)	354, 921, 1368, 1392, 1569, 2484, 2690, 2712
Bbv12I	GWGCWC	4 cut(s)	875, 945, 1451, 1721
BbvI	GCAGC	5 cut(s)	217, 698, 913, 935, 1874
BciT130I	CCWGG	7 cut(s)	174, 227, 276, 719, 2423, 2497, 2731
BciVI	GTATCC	2 cut(s)	162, 2228
BclI	TGATCA	3 cut(s)	331, 1741, 2362
BcnI	CCSGG	3 cut(s)	947, 1727, 2525
BcoDI	GTCTC	2 cut(s)	1067, 1923
BfaI	CTAG	4 cut(s)	641, 708, 2159, 2516
BfmI	CTRYAG	3 cut(s)	1341, 2132, 2565
BfrI	CTTAAG	1 cut(s)	2867
BfuAI	ACCTGC	1 cut(s)	679
BfuI	GTATCC	2 cut(s)	162, 2228
BisI	GCNGC	5 cut(s)	231, 712, 924, 927, 1863
BlsI	GCNGC	5 cut(s)	232, 713, 925, 928, 1864
Bme18I	GGWCC	5 cut(s)	54, 425, 2419, 2534, 2927
BmeT110I	CYCGRG	1 cut(s)	1326
BmgT120I	GGNCC	8 cut(s)	54, 124, 425, 1040, 1324, 2419, 2534, 2927
BmiI	GGNNCC	9 cut(s)	178, 264, 315, 958, 1480, 1590, 1764, 1794, 2772
BmrI	ACTGGG	1 cut(s)	2340
BmuI	ACTGGG	1 cut(s)	2340
BoxI	GACNNNNGTC	1 cut(s)	1569
BpiI	GAAGAC	8 cut(s)	354, 921, 1368, 1392, 1569, 2484, 2690, 2712
BpmI	CTGGAG	7 cut(s)	516, 696, 1811, 2444, 2562, 2706, 2735
Bpu10I	CCTNAGC	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	1825
BpuEI	CTTGAG	4 cut(s)	65, 1444, 2723, 2916
BpuMI	CCSGG	3 cut(s)	947, 1727, 2525
Bsa29I	ATCGAT	1 cut(s)	108
BsaAI	YACGTR	2 cut(s)	909, 2540
BsaHI	GRCGYC	1 cut(s)	2175
BsaJI	CCNNGG	6 cut(s)	390, 450, 717, 1474, 2184, 2730
Bsc4I	CCNNNNNNNGG	8 cut(s)	434, 583, 2185, 2543, 2684, 2730, 2731, 2780
Bse118I	RCCGGY	1 cut(s)	1220
Bse1I	ACTGG	4 cut(s)	533, 1672, 2089, 2335
Bse3DI	GCAATG	1 cut(s)	334
BseBI	CCWGG	7 cut(s)	174, 227, 276, 719, 2423, 2497, 2731
BseCI	ATCGAT	1 cut(s)	108
BseDI	CCNNGG	6 cut(s)	390, 450, 717, 1474, 2184, 2730
BseLI	CCNNNNNNNGG	8 cut(s)	434, 583, 2185, 2543, 2684, 2730, 2731, 2780
BseMI	GCAATG	1 cut(s)	334
BseNI	ACTGG	4 cut(s)	533, 1672, 2089, 2335
BseRI	GAGGAG	1 cut(s)	2129
BseSI	GKGCMC	2 cut(s)	875, 1451
BseXI	GCAGC	5 cut(s)	217, 698, 913, 935, 1874
BsgI	GTGCAG	4 cut(s)	1104, 1310, 1416, 1679
Bsh1236I	CGCG	1 cut(s)	430
BshFI	GGCC	6 cut(s)	126, 323, 499, 576, 1042, 1325
BshNI	GGYRCC	1 cut(s)	1478
BshVI	ATCGAT	1 cut(s)	108
BsiHKAI	GWGCWC	4 cut(s)	875, 945, 1451, 1721
BsiHKCI	CYCGRG	1 cut(s)	1326
BsiSI	CCGG	4 cut(s)	946, 1221, 1726, 2524
BslFI	GGGAC	2 cut(s)	568, 995
BslI	CCNNNNNNNGG	8 cut(s)	434, 583, 2185, 2543, 2684, 2730, 2731, 2780
BsmAI	GTCTC	2 cut(s)	1067, 1923
BsmFI	GGGAC	2 cut(s)	568, 995
BsmI	GAATGC	3 cut(s)	1063, 2342, 2494
BsnI	GGCC	6 cut(s)	126, 323, 499, 576, 1042, 1325
BsoBI	CYCGRG	1 cut(s)	1326
Bsp119I	TTCGAA	1 cut(s)	1825
Bsp1286I	GDGCHC	4 cut(s)	875, 945, 1451, 1721
Bsp19I	CCATGG	1 cut(s)	2184
BspACI	CCGC	8 cut(s)	6, 428, 1427, 1679, 2151, 2273, 2544, 2725
BspANI	GGCC	6 cut(s)	126, 323, 499, 576, 1042, 1325
BspDI	ATCGAT	1 cut(s)	108
BspFNI	CGCG	1 cut(s)	430
BspHI	TCATGA	2 cut(s)	973, 2943
BspLI	GGNNCC	9 cut(s)	178, 264, 315, 958, 1480, 1590, 1764, 1794, 2772
BspMAI	CTGCAG	3 cut(s)	1345, 2136, 2569
BspMI	ACCTGC	1 cut(s)	679
BspPI	GGATC	5 cut(s)	104, 810, 884, 1955, 2036
BspQI	GCTCTTC	1 cut(s)	282
BspT104I	TTCGAA	1 cut(s)	1825
BspT107I	GGYRCC	1 cut(s)	1478
BspTI	CTTAAG	1 cut(s)	2867
BsrBI	CCGCTC	2 cut(s)	6, 2273
BsrDI	GCAATG	1 cut(s)	334
BsrFI	RCCGGY	1 cut(s)	1220
BsrI	ACTGG	4 cut(s)	533, 1672, 2089, 2335
BssAI	RCCGGY	1 cut(s)	1220
BssECI	CCNNGG	6 cut(s)	390, 450, 717, 1474, 2184, 2730
BssNI	GRCGYC	1 cut(s)	2175
BssT1I	CCWWGG	2 cut(s)	450, 2184
Bst2UI	CCWGG	7 cut(s)	174, 227, 276, 719, 2423, 2497, 2731
Bst4CI	ACNGT	6 cut(s)	559, 1288, 2258, 2309, 2404, 2807
Bst6I	CTCTTC	3 cut(s)	282, 1326, 1489
BstACI	GRCGYC	1 cut(s)	2175
BstAFI	CTTAAG	1 cut(s)	2867
BstAPI	GCANNNNNTGC	1 cut(s)	1871
BstBAI	YACGTR	2 cut(s)	909, 2540
BstBI	TTCGAA	1 cut(s)	1825
BstC8I	GCNNGC	7 cut(s)	325, 1119, 1431, 1544, 1872, 2325, 2393
BstDSI	CCRYGG	3 cut(s)	390, 1474, 2184
BstFNI	CGCG	1 cut(s)	430
BstHHI	GCGC	1 cut(s)	2684
BstMAI	GTCTC	2 cut(s)	1067, 1923
BstMWI	GCNNNNNNNGC	3 cut(s)	505, 1455, 1871
BstNI	CCWGG	7 cut(s)	174, 227, 276, 719, 2423, 2497, 2731
BstNSI	RCATGY	4 cut(s)	665, 954, 1675, 2677
BstPAI	GACNNNNGTC	1 cut(s)	1569
BstSFI	CTRYAG	3 cut(s)	1341, 2132, 2565
BstSLI	GKGCMC	2 cut(s)	875, 1451
BstSNI	TACGTA	1 cut(s)	909
BstUI	CGCG	1 cut(s)	430
BstV1I	GCAGC	5 cut(s)	217, 698, 913, 935, 1874
BstV2I	GAAGAC	8 cut(s)	354, 921, 1368, 1392, 1569, 2484, 2690, 2712
BstX2I	RGATCY	1 cut(s)	889
BstXI	CCANNNNNNTGG	1 cut(s)	2191
BstYI	RGATCY	1 cut(s)	889
Bsu15I	ATCGAT	1 cut(s)	108
BsuI	GTATCC	2 cut(s)	162, 2228
BsuRI	GGCC	6 cut(s)	126, 323, 499, 576, 1042, 1325
BsuTUI	ATCGAT	1 cut(s)	108
BtgI	CCRYGG	3 cut(s)	390, 1474, 2184
BtsI	GCAGTG	2 cut(s)	2129, 2562
BtsIMutI	CAGTG	9 cut(s)	1293, 1650, 1698, 1830, 1957, 2129, 2263, 2314, 2562
BveI	ACCTGC	1 cut(s)	679
Cac8I	GCNNGC	7 cut(s)	325, 1119, 1431, 1544, 1872, 2325, 2393
CaiI	CAGNNNCTG	2 cut(s)	926, 929
CciI	TCATGA	2 cut(s)	973, 2943
CfoI	GCGC	1 cut(s)	2684
Cfr10I	RCCGGY	1 cut(s)	1220
Cfr13I	GGNCC	8 cut(s)	54, 124, 425, 1040, 1324, 2419, 2534, 2927
ClaI	ATCGAT	1 cut(s)	108
CseI	GACGC	2 cut(s)	2183, 2204
Csp6I	GTAC	5 cut(s)	447, 1142, 1278, 1479, 1596
CspCI	CAANNNNNGTGG	2 cut(s)	2082, 2117
CviQI	GTAC	5 cut(s)	447, 1142, 1278, 1479, 1596
DraI	TTTAAA	2 cut(s)	819, 1299
DrdI	GACNNNNNNGTC	1 cut(s)	2258
DseDI	GACNNNNNNGTC	1 cut(s)	2258
EaeI	YGGCCR	1 cut(s)	574
Eam1104I	CTCTTC	3 cut(s)	282, 1326, 1489
EarI	CTCTTC	3 cut(s)	282, 1326, 1489
EciI	GGCGGA	2 cut(s)	1416, 1694
Eco105I	TACGTA	1 cut(s)	909
Eco130I	CCWWGG	2 cut(s)	450, 2184
Eco47I	GGWCC	5 cut(s)	54, 425, 2419, 2534, 2927
Eco57I	CTGAAG	5 cut(s)	951, 1386, 1581, 1956, 2679
Eco88I	CYCGRG	1 cut(s)	1326
EcoO109I	RGGNCCY	3 cut(s)	54, 2419, 2927
EcoRII	CCWGG	7 cut(s)	172, 225, 274, 717, 2421, 2495, 2729
EcoT14I	CCWWGG	2 cut(s)	450, 2184
EcoT22I	ATGCAT	3 cut(s)	703, 2128, 2146
ErhI	CCWWGG	2 cut(s)	450, 2184
FalI	AAGNNNNNCTT	2 cut(s)	1384, 1416
FaqI	GGGAC	2 cut(s)	568, 995
FauI	CCCGC	2 cut(s)	2144, 2732
FauNDI	CATATG	1 cut(s)	253
FbaI	TGATCA	3 cut(s)	331, 1741, 2362
FblI	GTMKAC	1 cut(s)	2919
Fnu4HI	GCNGC	5 cut(s)	231, 712, 924, 927, 1863
Fsp4HI	GCNGC	5 cut(s)	231, 712, 924, 927, 1863
FspBI	CTAG	4 cut(s)	641, 708, 2159, 2516
GlaI	GCGC	1 cut(s)	2683
GluI	GCNGC	5 cut(s)	231, 712, 924, 927, 1863
GsuI	CTGGAG	7 cut(s)	516, 696, 1811, 2444, 2562, 2706, 2735
HaeIII	GGCC	6 cut(s)	126, 323, 499, 576, 1042, 1325
HapII	CCGG	4 cut(s)	946, 1221, 1726, 2524
HgaI	GACGC	2 cut(s)	2183, 2204
HhaI	GCGC	1 cut(s)	2684
Hin1I	GRCGYC	1 cut(s)	2175
Hin6I	GCGC	1 cut(s)	2682
HinP1I	GCGC	1 cut(s)	2682
HincII	GTYRAC	3 cut(s)	1551, 2083, 2251
HindII	GTYRAC	3 cut(s)	1551, 2083, 2251
HinfI	GANTC	6 cut(s)	866, 1075, 1310, 1346, 1618, 2210
HpaI	GTTAAC	1 cut(s)	2083
HpaII	CCGG	4 cut(s)	946, 1221, 1726, 2524
HphI	GGTGA	6 cut(s)	25, 1235, 1241, 1913, 2486, 2603
Hpy166II	GTNNAC	9 cut(s)	873, 1155, 1449, 1551, 2083, 2194, 2251, 2537, 2920
Hpy188III	TCNNGA	9 cut(s)	311, 974, 1461, 1790, 2221, 2579, 2702, 2752, 2944
Hpy8I	GTNNAC	9 cut(s)	873, 1155, 1449, 1551, 2083, 2194, 2251, 2537, 2920
Hpy99I	CGWCG	1 cut(s)	1575
HpyAV	CCTTC	5 cut(s)	753, 1389, 1765, 1832, 1891
HpyCH4III	ACNGT	6 cut(s)	559, 1288, 2258, 2309, 2404, 2807
HpyCH4IV	ACGT	6 cut(s)	908, 1261, 1570, 2085, 2539, 2916
HpyF10VI	GCNNNNNNNGC	3 cut(s)	505, 1455, 1871
HpySE526I	ACGT	6 cut(s)	908, 1261, 1570, 2085, 2539, 2916
Hsp92I	GRCGYC	1 cut(s)	2175
HspAI	GCGC	1 cut(s)	2682
KpnI	GGTACC	1 cut(s)	1482
Ksp22I	TGATCA	3 cut(s)	331, 1741, 2362
KspAI	GTTAAC	1 cut(s)	2083
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	8 cut(s)	268, 505, 719, 948, 962, 1594, 1762, 1792
Lsp1109I	GCAGC	5 cut(s)	217, 698, 913, 935, 1874
MaeI	CTAG	4 cut(s)	641, 708, 2159, 2516
MaeII	ACGT	6 cut(s)	908, 1261, 1570, 2085, 2539, 2916
MaeIII	GTNAC	9 cut(s)	133, 247, 721, 767, 904, 1952, 2154, 2317, 2560
MbiI	CCGCTC	2 cut(s)	6, 2273
MfeI	CAATTG	1 cut(s)	1079
MflI	RGATCY	1 cut(s)	889
MhlI	GDGCHC	4 cut(s)	875, 945, 1451, 1721
MlyI	GAGTC	2 cut(s)	1069, 2219
MmeI	TCCRAC	5 cut(s)	318, 666, 714, 1369, 2151
Mph1103I	ATGCAT	3 cut(s)	703, 2128, 2146
MroXI	GAANNNNTTC	2 cut(s)	1399, 1821
MseI	TTAA	9 cut(s)	519, 818, 1239, 1298, 1841, 1968, 2082, 2813, 2868
MslI	CAYNNNNRTG	5 cut(s)	194, 1929, 2189, 2442, 2888
MspA1I	CMGCKG	2 cut(s)	926, 2075
MspCI	CTTAAG	1 cut(s)	2867
MspI	CCGG	4 cut(s)	946, 1221, 1726, 2524
MunI	CAATTG	1 cut(s)	1079
Mva1269I	GAATGC	3 cut(s)	1063, 2342, 2494
MvaI	CCWGG	7 cut(s)	174, 227, 276, 719, 2423, 2497, 2731
MvnI	CGCG	1 cut(s)	430
MwoI	GCNNNNNNNGC	3 cut(s)	505, 1455, 1871
NciI	CCSGG	3 cut(s)	947, 1727, 2525
NcoI	CCATGG	1 cut(s)	2184
NdeI	CATATG	1 cut(s)	253
NlaIV	GGNNCC	9 cut(s)	178, 264, 315, 958, 1480, 1590, 1764, 1794, 2772
NmuCI	GTSAC	5 cut(s)	247, 721, 1952, 2154, 2560
NsiI	ATGCAT	3 cut(s)	703, 2128, 2146
NspI	RCATGY	4 cut(s)	665, 954, 1675, 2677
NspV	TTCGAA	1 cut(s)	1825
PagI	TCATGA	2 cut(s)	973, 2943
PciI	ACATGT	1 cut(s)	661
PciSI	GCTCTTC	1 cut(s)	282
PcsI	WCGNNNNNNNCGW	1 cut(s)	1576
PctI	GAATGC	3 cut(s)	1063, 2342, 2494
PdmI	GAANNNNTTC	2 cut(s)	1399, 1821
PfeI	GAWTC	4 cut(s)	866, 1310, 1346, 1618
PflFI	GACNNNGTC	1 cut(s)	2915
PflMI	CCANNNNNTGG	2 cut(s)	2185, 2684
PfoI	TCCNGGA	3 cut(s)	274, 2421, 2495
PkrI	GCNGC	5 cut(s)	232, 713, 925, 928, 1864
PleI	GAGTC	2 cut(s)	1069, 2218
PpsI	GAGTC	2 cut(s)	1069, 2218
Ppu21I	YACGTR	2 cut(s)	909, 2540
PpuMI	RGGWCCY	3 cut(s)	54, 2419, 2927
PscI	ACATGT	1 cut(s)	661
PshAI	GACNNNNGTC	1 cut(s)	1569
PsiI	TTATAA	1 cut(s)	2766
Psp5II	RGGWCCY	3 cut(s)	54, 2419, 2927
Psp6I	CCWGG	7 cut(s)	172, 225, 274, 717, 2421, 2495, 2729
PspGI	CCWGG	7 cut(s)	172, 225, 274, 717, 2421, 2495, 2729
PspN4I	GGNNCC	9 cut(s)	178, 264, 315, 958, 1480, 1590, 1764, 1794, 2772
PspPI	GGNCC	8 cut(s)	54, 124, 425, 1040, 1324, 2419, 2534, 2927
PspPPI	RGGWCCY	3 cut(s)	54, 2419, 2927
PsrI	GAACNNNNNNTAC	2 cut(s)	742, 774
PstI	CTGCAG	3 cut(s)	1345, 2136, 2569
PstNI	CAGNNNCTG	2 cut(s)	926, 929
PsuI	RGATCY	1 cut(s)	889
PsyI	GACNNNGTC	1 cut(s)	2915
PvuII	CAGCTG	2 cut(s)	926, 2075
RsaI	GTAC	5 cut(s)	448, 1143, 1279, 1480, 1597
RsaNI	GTAC	5 cut(s)	447, 1142, 1278, 1479, 1596
RseI	CAYNNNNRTG	5 cut(s)	194, 1929, 2189, 2442, 2888
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	9 cut(s)	519, 818, 1239, 1298, 1841, 1968, 2082, 2813, 2868
SatI	GCNGC	5 cut(s)	231, 712, 924, 927, 1863
Sau96I	GGNCC	8 cut(s)	54, 124, 425, 1040, 1324, 2419, 2534, 2927
SchI	GAGTC	2 cut(s)	1069, 2219
SduI	GDGCHC	4 cut(s)	875, 945, 1451, 1721
SfcI	CTRYAG	3 cut(s)	1341, 2132, 2565
SfuI	TTCGAA	1 cut(s)	1825
SinI	GGWCC	5 cut(s)	54, 425, 2419, 2534, 2927
SmiMI	CAYNNNNRTG	5 cut(s)	194, 1929, 2189, 2442, 2888
SmlI	CTYRAG	5 cut(s)	80, 1459, 2702, 2867, 2931
SmoI	CTYRAG	5 cut(s)	80, 1459, 2702, 2867, 2931
SnaBI	TACGTA	1 cut(s)	909
SsiI	CCGC	8 cut(s)	6, 428, 1427, 1679, 2151, 2273, 2544, 2725
SspMI	CTAG	4 cut(s)	641, 708, 2159, 2516
StyI	CCWWGG	2 cut(s)	450, 2184
TaaI	ACNGT	6 cut(s)	559, 1288, 2258, 2309, 2404, 2807
TaiI	ACGT	6 cut(s)	911, 1264, 1573, 2088, 2542, 2919
TaqI	TCGA	6 cut(s)	108, 1100, 1825, 2262, 2667, 2827
TatI	WGTACW	2 cut(s)	1277, 1595
TfiI	GAWTC	4 cut(s)	866, 1310, 1346, 1618
Tru1I	TTAA	9 cut(s)	519, 818, 1239, 1298, 1841, 1968, 2082, 2813, 2868
Tru9I	TTAA	9 cut(s)	519, 818, 1239, 1298, 1841, 1968, 2082, 2813, 2868
TscAI	CASTG	9 cut(s)	1293, 1657, 1705, 1837, 1957, 2136, 2263, 2314, 2569
TseFI	GTSAC	5 cut(s)	247, 721, 1952, 2154, 2560
TseI	GCWGC	5 cut(s)	230, 711, 923, 926, 1862
Tsp45I	GTSAC	5 cut(s)	247, 721, 1952, 2154, 2560
TspGWI	ACGGA	2 cut(s)	379, 1463
TspRI	CASTG	9 cut(s)	1293, 1657, 1705, 1837, 1957, 2136, 2263, 2314, 2569
Tth111I	GACNNNGTC	1 cut(s)	2915
Van91I	CCANNNNNTGG	2 cut(s)	2185, 2684
Vha464I	CTTAAG	1 cut(s)	2867
VneI	GTGCAC	2 cut(s)	871, 1447
VpaK11BI	GGWCC	5 cut(s)	54, 425, 2419, 2534, 2927
XapI	RAATTY	8 cut(s)	43, 95, 999, 1241, 1300, 1608, 2026, 2627
XceI	RCATGY	4 cut(s)	665, 954, 1675, 2677
XmiI	GTMKAC	1 cut(s)	2919
XmnI	GAANNNNTTC	2 cut(s)	1399, 1821
XspI	CTAG	4 cut(s)	641, 708, 2159, 2516
Zsp2I	ATGCAT	3 cut(s)	703, 2128, 2146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.