Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0009255

Physical Location & Seq

Genomic Coordinates Reverse (-)

1574909 .. 1576971

Gene Structure 2063 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGGACACTCCCAATAACTACCAGAAGTACGGCGTCCCTTTCTACGCCGCCGCTTGGCTTCCGGGCCTCGGCAAATCTAAACGACCGGACCAGGAAGACGACGCCGGCGACGACAAAAAGGAAACCGAGACTCAGACGCATAAGACAGAGACCCAGACTGAACTAGCCCAATTCGATTCCAGCCAAAACCACGTCGTTTTCTCCGGCGGTGGCGGGGAGGGCCGCAGCGGCGTCCCAAACGCCATCCTTATTGCCCAATTCGATCCCGCCTCCATTTCTCTCTCCAATCAGCCGGTGGCTAAGCTCAACACTGGCTCTGCTTTGCCGTATAGAATGGCGGTTCACCCCGCCGGTAGCGGCCTTGTTTGCTCTTTCCCCGATAGTTGCAGATGGTTTGAATTGGAGGAAGAAAGGGATGAAGTGCCTAAACTGGCATTGAGGCAGTCTGGGAGAGTGCTGGAGCAATTGCAAGATGTTGGACAACAGTTAGCTTTGGCGTTTGACAGAGACGGTTCCATGCTTGCTGCTGGAGGCGAGGATGGCAAGTTAAGGGTTTTCAAGTGGCCTAGCATGGAAATTATTCTCGATGAAGCTAAAGCTCATCCTACAATGAAGCAATTAGATTTCAGCCCTGATGGGAAATTTCTCGTCTCCTTAGGAGATAGAGGCCCTGGTAGGGTGTGGGATGTAACTTCATCTACTGTTGTAGCTTCTCTACCAGCGGAAAAGGATGAGGTTTTTTGCGGATGCAGATTTTCTGTAATTGATGATGGGAGTCATATTTTATATGTTGCAGATAAATCGGGAAGCATTGTAACATGGAACACGACCACTTGGAAGAGGATTGGATCAAAGATCATTAGTAGAGACATTATTTCCGCCTTTGATGTTTCAGCTGATGGAAAACTCCTTGGATGTGGGACAGCTGGTGGATCGATCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002790 GO:0003400 GO:0003674 GO:0005085 GO:0005090 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005783 GO:0005789 GO:0005886 GO:0006810 GO:0006888 GO:0008047 GO:0008104 GO:0008150 GO:0009306 GO:0009987 GO:0012505 GO:0015031 GO:0015833 GO:0016020 GO:0016021 GO:0016192 GO:0019899 GO:0030176 GO:0030234 GO:0030695 GO:0031090 GO:0031224 GO:0031227 GO:0031984 GO:0032386 GO:0032879 GO:0032940 GO:0033036 GO:0033043 GO:0042175 GO:0042886 GO:0043085 GO:0043087 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043254 GO:0043547 GO:0044087 GO:0044093 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046903 GO:0046907 GO:0048193 GO:0048209 GO:0050789 GO:0050790 GO:0050794 GO:0051020 GO:0051049 GO:0051128 GO:0051179 GO:0051234 GO:0051336 GO:0051345 GO:0051641 GO:0051649 GO:0060341 GO:0060589 GO:0060627 GO:0060628 GO:0065007 GO:0065009 GO:0071702 GO:0071705 GO:0071944 GO:0090113 GO:0098588 GO:0098772 GO:0098805 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

ANAPC4_WD40 WD40

Protein Analysis

315

Amino Acids

33.9

Weight (kDa)

4.99

Isoelectric Point (pI)

42.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
WD40_Prp19	PF24814	148 - 281	2.8e-08	Prp19 WD40 domain
Beta-prop_THOC3	PF25174	149 - 310	6.8e-11	THOC3 beta-propeller domain
Beta-prop_THOC3	PF25174	155 - 243	1.8e-08	THOC3 beta-propeller domain
Beta-prop_WDR3_1st	PF25173	161 - 311	3.6e-11	WDR3 first beta-propeller domain
Beta-prop_WDR5	PF25175	164 - 308	9.6e-11	WDR5 beta-propeller domain
WD40_WDHD1_1st	PF24817	164 - 313	4.5e-10	WDHD1 first WD40 domain
WDR55	PF24796	164 - 312	4.5e-06	WDR55

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009255)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G01470 AT5G50550 AT5G50650
fragaria_vesca	FvH4_4g32580
malus_domestica	MD08G1204700.v1.1 MD13G1024400.v1.1 MD16G1027100.v1.1
prunus_persica	Prupe.1G326100_v2.0.a1 Prupe.1G326100_v2.0.a1
pyrus_communis	pycom13g02270 pycom16g02290
rosa_chinensis	RchiOBHm_Chr4g0441451
rosa_laevigata	RLG00000006091
rosa_multiflora	Rmu_sc0003360.1_g000007 Rmu_sc0011145.1_g000002
rosa_roxburghii	Rroxscaffold_5G00382320
rosa_rugosa	Rorug04G0333800
rosa_samantha	Rh4AG385300 Rh4BG399500 Rh4CG414500 Rh4DG392100
rosa_wichuraiana	Rw4G033280

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	3 cut(s)	257, 856, 940
AcsI	RAATTY	1 cut(s)	641
AcyI	GRCGYC	3 cut(s)	33, 102, 231
AfaI	GTAC	1 cut(s)	29
AfiI	CCNNNNNNNGG	3 cut(s)	54, 68, 676
AgsI	TTSAA	2 cut(s)	398, 559
AjiI	CACGTC	1 cut(s)	193
AjnI	CCWGG	2 cut(s)	90, 670
AluBI	AGCT	7 cut(s)	304, 491, 593, 599, 710, 896, 926
AluI	AGCT	7 cut(s)	304, 491, 593, 599, 710, 896, 926
Alw26I	GTCTC	5 cut(s)	122, 143, 501, 655, 861
AlwI	GGATC	3 cut(s)	257, 856, 940
AoxI	GGCC	5 cut(s)	64, 220, 358, 563, 667
ApeKI	GCWGC	2 cut(s)	225, 524
ApoI	RAATTY	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	579
AspS9I	GGNCC	4 cut(s)	64, 88, 220, 668
AsuC2I	CCSGG	1 cut(s)	63
AsuHPI	GGTGA	1 cut(s)	335
AvaII	GGWCC	1 cut(s)	88
AxyI	CCTNAGG	1 cut(s)	655
BbsI	GAAGAC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	237, 511
BccI	CCATC	6 cut(s)	251, 384, 533, 629, 764, 893
BceAI	ACGGC	2 cut(s)	46, 310
BcgI	CGANNNNNNTGC	2 cut(s)	783, 817
BciT130I	CCWGG	2 cut(s)	92, 672
BcnI	CCSGG	1 cut(s)	63
BcoDI	GTCTC	5 cut(s)	122, 143, 501, 655, 861
BfaI	CTAG	2 cut(s)	164, 567
BglI	GCCNNNNNGGC	1 cut(s)	228
BisI	GCNGC	7 cut(s)	48, 51, 223, 226, 229, 358, 525
BlpI	GCTNAGC	1 cut(s)	300
BlsI	GCNGC	7 cut(s)	49, 52, 224, 227, 230, 359, 526
Bme1390I	CCNGG	3 cut(s)	63, 92, 672
Bme18I	GGWCC	1 cut(s)	88
BmgBI	CACGTC	1 cut(s)	193
BmgT120I	GGNCC	4 cut(s)	64, 88, 220, 668
BmiI	GGNNCC	1 cut(s)	514
BmrFI	CCNGG	3 cut(s)	63, 92, 672
BmsI	GCATC	1 cut(s)	737
BpiI	GAAGAC	1 cut(s)	102
BpmI	CTGGAG	2 cut(s)	479, 549
Bpu1102I	GCTNAGC	1 cut(s)	300
BpuMI	CCSGG	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	935
BsaHI	GRCGYC	3 cut(s)	33, 102, 231
BsaI	GGTCTC	1 cut(s)	143
BsaJI	CCNNGG	3 cut(s)	67, 670, 910
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	3 cut(s)	54, 68, 676
Bse118I	RCCGGY	3 cut(s)	104, 292, 350
Bse1I	ACTGG	2 cut(s)	316, 435
Bse21I	CCTNAGG	1 cut(s)	655
BseBI	CCWGG	2 cut(s)	92, 672
BseCI	ATCGAT	1 cut(s)	935
BseDI	CCNNGG	3 cut(s)	67, 670, 910
BseGI	GGATG	8 cut(s)	243, 421, 544, 601, 691, 736, 752, 920
BseLI	CCNNNNNNNGG	3 cut(s)	54, 68, 676
BseMII	CTCAG	1 cut(s)	146
BseNI	ACTGG	2 cut(s)	316, 435
BseXI	GCAGC	2 cut(s)	237, 511
Bsh1285I	CGRYCG	1 cut(s)	86
BshFI	GGCC	5 cut(s)	66, 222, 360, 565, 669
BshVI	ATCGAT	1 cut(s)	935
BsiEI	CGRYCG	1 cut(s)	86
BsiSI	CCGG	6 cut(s)	62, 86, 105, 204, 293, 351
BslFI	GGGAC	3 cut(s)	20, 218, 934
BslI	CCNNNNNNNGG	3 cut(s)	54, 68, 676
BsmAI	GTCTC	5 cut(s)	122, 143, 501, 655, 861
BsmBI	CGTCTC	2 cut(s)	501, 655
BsmFI	GGGAC	3 cut(s)	20, 218, 934
BsnI	GGCC	5 cut(s)	66, 222, 360, 565, 669
Bso31I	GGTCTC	1 cut(s)	143
Bsp143I	GATC	5 cut(s)	262, 848, 855, 932, 936
Bsp1720I	GCTNAGC	1 cut(s)	300
BspANI	GGCC	5 cut(s)	66, 222, 360, 565, 669
BspCNI	CTCAG	1 cut(s)	145
BspDI	ATCGAT	1 cut(s)	935
BspLI	GGNNCC	1 cut(s)	514
BspPI	GGATC	3 cut(s)	257, 856, 940
BspTNI	GGTCTC	1 cut(s)	143
BsrFI	RCCGGY	3 cut(s)	104, 292, 350
BsrI	ACTGG	2 cut(s)	316, 435
BssAI	RCCGGY	3 cut(s)	104, 292, 350
BssECI	CCNNGG	3 cut(s)	67, 670, 910
BssMI	GATC	5 cut(s)	262, 848, 855, 932, 936
BssNI	GRCGYC	3 cut(s)	33, 102, 231
BssT1I	CCWWGG	1 cut(s)	910
Bst2UI	CCWGG	2 cut(s)	92, 672
Bst4CI	ACNGT	3 cut(s)	486, 512, 703
Bst6I	CTCTTC	1 cut(s)	833
BstACI	GRCGYC	3 cut(s)	33, 102, 231
BstC8I	GCNNGC	2 cut(s)	106, 522
BstDEI	CTNAG	3 cut(s)	132, 300, 655
BstF5I	GGATG	8 cut(s)	243, 421, 544, 601, 691, 736, 752, 920
BstKTI	GATC	5 cut(s)	265, 851, 858, 935, 939
BstMAI	GTCTC	5 cut(s)	122, 143, 501, 655, 861
BstMBI	GATC	5 cut(s)	262, 848, 855, 932, 936
BstMCI	CGRYCG	1 cut(s)	86
BstMWI	GCNNNNNNNGC	4 cut(s)	219, 228, 366, 540
BstNI	CCWGG	2 cut(s)	92, 672
BstSCI	CCNGG	3 cut(s)	61, 90, 670
BstV1I	GCAGC	2 cut(s)	237, 511
BstV2I	GAAGAC	1 cut(s)	102
Bsu15I	ATCGAT	1 cut(s)	935
Bsu36I	CCTNAGG	1 cut(s)	655
BsuRI	GGCC	5 cut(s)	66, 222, 360, 565, 669
BsuTUI	ATCGAT	1 cut(s)	935
BtrI	CACGTC	1 cut(s)	193
BtsCI	GGATG	8 cut(s)	243, 421, 544, 601, 691, 736, 752, 920
BtsIMutI	CAGTG	1 cut(s)	309
Cac8I	GCNNGC	2 cut(s)	106, 522
Cfr10I	RCCGGY	3 cut(s)	104, 292, 350
Cfr13I	GGNCC	4 cut(s)	64, 88, 220, 668
ClaI	ATCGAT	1 cut(s)	935
CseI	GACGC	4 cut(s)	22, 110, 145, 220
Csp6I	GTAC	1 cut(s)	28
CviAII	CATG	3 cut(s)	517, 571, 819
CviQI	GTAC	1 cut(s)	28
DdeI	CTNAG	3 cut(s)	132, 300, 655
DpnI	GATC	5 cut(s)	264, 850, 857, 934, 938
DpnII	GATC	5 cut(s)	262, 848, 855, 932, 936
Eam1104I	CTCTTC	1 cut(s)	833
EarI	CTCTTC	1 cut(s)	833
EciI	GGCGGA	1 cut(s)	868
Eco130I	CCWWGG	1 cut(s)	910
Eco31I	GGTCTC	1 cut(s)	143
Eco47I	GGWCC	1 cut(s)	88
Eco81I	CCTNAGG	1 cut(s)	655
EcoO109I	RGGNCCY	1 cut(s)	668
EcoRII	CCWGG	2 cut(s)	90, 670
EcoT14I	CCWWGG	1 cut(s)	910
ErhI	CCWWGG	1 cut(s)	910
Esp3I	CGTCTC	2 cut(s)	501, 655
FaeI	CATG	3 cut(s)	520, 574, 822
FaiI	YATR	8 cut(s)	141, 330, 518, 572, 780, 787, 789, 820
FaqI	GGGAC	3 cut(s)	20, 218, 934
FatI	CATG	3 cut(s)	516, 570, 818
FauI	CCCGC	3 cut(s)	206, 274, 355
Fnu4HI	GCNGC	7 cut(s)	48, 51, 223, 226, 229, 358, 525
FokI	GGATG	8 cut(s)	230, 428, 551, 588, 698, 743, 759, 927
Fsp4HI	GCNGC	7 cut(s)	48, 51, 223, 226, 229, 358, 525
FspBI	CTAG	2 cut(s)	164, 567
GluI	GCNGC	7 cut(s)	48, 51, 223, 226, 229, 358, 525
GsuI	CTGGAG	2 cut(s)	479, 549
HaeIII	GGCC	5 cut(s)	66, 222, 360, 565, 669
HapII	CCGG	6 cut(s)	62, 86, 105, 204, 293, 351
HgaI	GACGC	4 cut(s)	22, 110, 145, 220
Hin1I	GRCGYC	3 cut(s)	33, 102, 231
Hin1II	CATG	3 cut(s)	520, 574, 822
HinfI	GANTC	3 cut(s)	130, 176, 775
HpaII	CCGG	6 cut(s)	62, 86, 105, 204, 293, 351
HphI	GGTGA	1 cut(s)	335
Hpy166II	GTNNAC	1 cut(s)	343
Hpy188I	TCNGA	1 cut(s)	135
Hpy188III	TCNNGA	2 cut(s)	584, 804
Hpy8I	GTNNAC	1 cut(s)	343
Hpy99I	CGWCG	3 cut(s)	104, 113, 197
HpyCH4III	ACNGT	3 cut(s)	486, 512, 703
HpyCH4IV	ACGT	1 cut(s)	192
HpyCH4V	TGCA	4 cut(s)	387, 469, 750, 794
HpyF10VI	GCNNNNNNNGC	4 cut(s)	219, 228, 366, 540
HpyF3I	CTNAG	3 cut(s)	132, 300, 655
HpySE526I	ACGT	1 cut(s)	192
Hsp92I	GRCGYC	3 cut(s)	33, 102, 231
Hsp92II	CATG	3 cut(s)	520, 574, 822
KroI	GCCGGC	1 cut(s)	104
KroNI	GCCGGC	1 cut(s)	106
Kzo9I	GATC	5 cut(s)	262, 848, 855, 932, 936
LmnI	GCTCC	1 cut(s)	460
Lsp1109I	GCAGC	2 cut(s)	237, 511
LweI	GCATC	1 cut(s)	737
MaeI	CTAG	2 cut(s)	164, 567
MaeII	ACGT	1 cut(s)	192
MaeIII	GTNAC	2 cut(s)	688, 814
MalI	GATC	5 cut(s)	264, 850, 857, 934, 938
MboI	GATC	5 cut(s)	262, 848, 855, 932, 936
MboII	GAAGA	3 cut(s)	107, 419, 850
MfeI	CAATTG	1 cut(s)	464
MluCI	AATT	8 cut(s)	170, 257, 398, 464, 576, 617, 641, 762
MlyI	GAGTC	2 cut(s)	124, 784
MmeI	TCCRAC	1 cut(s)	457
MreI	CGCCGGCG	1 cut(s)	104
MroNI	GCCGGC	1 cut(s)	104
MroXI	GAANNNNTTC	1 cut(s)	579
MseI	TTAA	1 cut(s)	548
MspA1I	CMGCKG	4 cut(s)	228, 722, 896, 926
MspI	CCGG	6 cut(s)	62, 86, 105, 204, 293, 351
MspR9I	CCNGG	3 cut(s)	63, 92, 672
MunI	CAATTG	1 cut(s)	464
MvaI	CCWGG	2 cut(s)	92, 672
MwoI	GCNNNNNNNGC	4 cut(s)	219, 228, 366, 540
NaeI	GCCGGC	1 cut(s)	106
NciI	CCSGG	1 cut(s)	63
NdeII	GATC	5 cut(s)	262, 848, 855, 932, 936
NgoMIV	GCCGGC	1 cut(s)	104
NlaIII	CATG	3 cut(s)	520, 574, 822
NlaIV	GGNNCC	1 cut(s)	514
NmeAIII	GCCGAG	1 cut(s)	48
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 108
PdiI	GCCGGC	1 cut(s)	106
PdmI	GAANNNNTTC	1 cut(s)	579
PfeI	GAWTC	1 cut(s)	176
PkrI	GCNGC	7 cut(s)	49, 52, 224, 227, 230, 359, 526
PleI	GAGTC	2 cut(s)	124, 783
PpsI	GAGTC	2 cut(s)	124, 783
Psp6I	CCWGG	2 cut(s)	90, 670
PspGI	CCWGG	2 cut(s)	90, 670
PspN4I	GGNNCC	1 cut(s)	514
PspPI	GGNCC	4 cut(s)	64, 88, 220, 668
PvuII	CAGCTG	2 cut(s)	896, 926
RsaI	GTAC	1 cut(s)	29
RsaNI	GTAC	1 cut(s)	28
SaqAI	TTAA	1 cut(s)	548
SatI	GCNGC	7 cut(s)	48, 51, 223, 226, 229, 358, 525
Sau3AI	GATC	5 cut(s)	262, 848, 855, 932, 936
Sau96I	GGNCC	4 cut(s)	64, 88, 220, 668
SchI	GAGTC	2 cut(s)	124, 784
ScrFI	CCNGG	3 cut(s)	63, 92, 672
SetI	ASST	9 cut(s)	195, 306, 493, 595, 601, 712, 738, 898, 928
SfaNI	GCATC	1 cut(s)	737
SgrAI	CRCCGGYG	1 cut(s)	104
SinI	GGWCC	1 cut(s)	88
Sse9I	AATT	8 cut(s)	170, 257, 398, 464, 576, 617, 641, 762
SspMI	CTAG	2 cut(s)	164, 567
StyD4I	CCNGG	3 cut(s)	61, 90, 670
StyI	CCWWGG	1 cut(s)	910
TaaI	ACNGT	3 cut(s)	486, 512, 703
TaiI	ACGT	1 cut(s)	195
TaqI	TCGA	4 cut(s)	174, 261, 585, 935
TasI	AATT	8 cut(s)	170, 257, 398, 464, 576, 617, 641, 762
TauI	GCSGC	5 cut(s)	50, 53, 225, 231, 360
TfiI	GAWTC	1 cut(s)	176
Tru1I	TTAA	1 cut(s)	548
Tru9I	TTAA	1 cut(s)	548
TscAI	CASTG	1 cut(s)	316
TseI	GCWGC	2 cut(s)	225, 524
TspDTI	ATGAA	4 cut(s)	432, 603, 626, 684
TspRI	CASTG	1 cut(s)	316
VpaK11BI	GGWCC	1 cut(s)	88
XapI	RAATTY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	292
XmnI	GAANNNNTTC	1 cut(s)	579
XspI	CTAG	2 cut(s)	164, 567

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.