pycom13g04750

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014472
Physical Location & Seq
Reverse (-)
3157262 .. 3158913
1652 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1125 bp
ATGCAGACATTTTCATGCACTTTTCACTTATATATATATATCTCTCAGTCCCAACCATCTCTCCCACTCTTACCAATCCTCCAAGAAAACCCTCGATCGCAACCGAAAATGGCTCCTTCCCTTGGCTTCCGACCCTTCGTTGTGCAACTTTTGCTGCTAGTTTTCTCCGTTTTGAGCACCAGCTTGCGCGCAGGTGACCCTCCGTTAACGTTGGACTACTACAAATCTGCATGTCCGACTGTGTTTGACATTGTGAAGAAAGAAATGGAATGTGCTGTGCTCTCTGATCCTCGTAACGCTGCCTTGGTAGTTCGGTTGCATTTCCACGACTGTTTTGTTCAGGGATGTGATGGATCGGTTTTGCTAGAGGACACAATCGACCTGACAGGGGAGAAGAAAGCTTTGCCCAACATACACTCTTTAAAAGGTTTCAGAATTGTTGACAGAATCAAGAACCAGCTCGAATCAGAATGCCCAGGAATCGTTTCATGCGCTGATCTTCTCACTATTGCTGCAAGAGATGCTGTGATTCTGGTTGGTGGACCTTATTGGGACGTTCCTCTAGGAAGAAAAGATTCCATAACTGCTAGCCCTGAACTTGCAGAGGCTAACATTCCTACTGCAAATGAAGGCCTTCTGAAAATCATCTCCAAATTTCTTTACCAAGGCTTATCAGTCACAGATATGGTGGCTCTTTCAGGAGCTCACACAATTGGCATGGCGCGGTGTGAGAACGTAAGAGAAAGGATTTATAGCGGCGAATTCGAAGCAAGTTCAGGATTCAATCCGTCGTCCCAGTCGCACCTCAGCGACCTGAGATCGACGTGCCCACTAGTTGGTGGGGACAATAACGTAACCGCCATGGATTACGTGACTCCCGAACTCTTTGATAATTCTTTCTATCAACTGCTGCTGAAAGGGGAGGGAGTGCTAAACTCAGATCAGGAAATGTACTCTAGTTTGTTGGGGATCGAAACGGGGGAGATTGTGAAGAAGTATGCAGCTGATCCAATTGCTTTCTTCGAGCAGTTTTCGGAGTCGATGGTGAAGTTGGGAAATATTGTTAACGATGAAAGCTTTGAGAATGGAGAAGTGAGAAAAAATTGCAGGTTCGTCAACACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

375

Amino Acids

41.15

Weight (kDa)

4.93

Isoelectric Point (pI)

44.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 85 - 336 9e-75 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014472)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G68850
fragaria_vesca FvH4_4g28690
malus_domestica MD13G1053000.v1.1 MD16G1052000.v1.1
prunus_persica Prupe.1G299000_v2.0.a1
pyrus_communis pycom13g04750 pycom16g04570
rosa_chinensis RchiOBHm_Chr4g0436811
rosa_laevigata RLG00000006495
rosa_multiflora Rmu_sc0001837.1_g000013
rosa_roxburghii Rroxscaffold_5G00377870
rosa_rugosa Rorug04G0296400
rosa_samantha Rh4AG350700 Rh4BG359700 Rh4CG374000 Rh4DG353600
rosa_wichuraiana Rw4G030690

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 2 cut(s) 182, 1098
AccB7I CCANNNNNTGG 1 cut(s) 836
AccII CGCG 2 cut(s) 189, 724
AciI CCGC 3 cut(s) 724, 756, 858
AclI AACGTT 1 cut(s) 209
AclWI GGATC 4 cut(s) 281, 361, 977, 1001
AcsI RAATTY 2 cut(s) 653, 761
AfaI GTAC 1 cut(s) 953
AfiI CCNNNNNNNGG 3 cut(s) 122, 388, 836
AgsI TTSAA 1 cut(s) 784
AhlI ACTAGT 1 cut(s) 832
AjiI CACGTC 1 cut(s) 825
AjnI CCWGG 1 cut(s) 475
AluBI AGCT 6 cut(s) 183, 401, 460, 704, 1004, 1077
AluI AGCT 6 cut(s) 183, 401, 460, 704, 1004, 1077
Alw21I GWGCWC 3 cut(s) 179, 282, 706
AlwI GGATC 4 cut(s) 281, 361, 977, 1001
AoxI GGCC 1 cut(s) 631
ApeKI GCWGC 5 cut(s) 154, 299, 512, 910, 1001
ApoI RAATTY 2 cut(s) 653, 761
Asp700I GAANNNNTTC 3 cut(s) 484, 574, 633
AspLEI GCGC 4 cut(s) 189, 191, 494, 724
AspS9I GGNCC 1 cut(s) 542
AsuHPI GGTGA 2 cut(s) 206, 1057
AsuII TTCGAA 1 cut(s) 765
AsuNHI GCTAGC 1 cut(s) 587
AvaII GGWCC 1 cut(s) 542
BaeGI GKGCMC 1 cut(s) 830
BanII GRGCYC 1 cut(s) 706
Bbv12I GWGCWC 3 cut(s) 179, 282, 706
BbvCI CCTCAGC 1 cut(s) 806
BbvI GCAGC 5 cut(s) 141, 286, 499, 897, 1013
BccI CCATC 3 cut(s) 64, 344, 1036
BciT130I CCWGG 1 cut(s) 477
BcuI ACTAGT 1 cut(s) 832
BfaI CTAG 6 cut(s) 158, 365, 563, 588, 833, 957
BfuAI ACCTGC 2 cut(s) 182, 1098
BisI GCNGC 6 cut(s) 155, 300, 513, 757, 911, 1002
BlsI GCNGC 6 cut(s) 156, 301, 514, 758, 912, 1003
Bme1390I CCNGG 1 cut(s) 477
Bme18I GGWCC 1 cut(s) 542
BmgBI CACGTC 1 cut(s) 825
BmgT120I GGNCC 1 cut(s) 542
BmiI GGNNCC 1 cut(s) 114
BmrFI CCNGG 1 cut(s) 477
BmrI ACTGGG 1 cut(s) 790
BmsI GCATC 1 cut(s) 511
BmtI GCTAGC 1 cut(s) 591
BmuI ACTGGG 1 cut(s) 790
Bpu10I CCTNAGC 1 cut(s) 806
Bpu14I TTCGAA 1 cut(s) 765
BsaAI YACGTR 1 cut(s) 871
BsaJI CCNNGG 5 cut(s) 121, 303, 475, 664, 861
BsaXI ACNNNNNCTCC 4 cut(s) 45, 63, 75, 93
Bsc4I CCNNNNNNNGG 3 cut(s) 122, 388, 836
Bse1I ACTGG 1 cut(s) 796
BseBI CCWGG 1 cut(s) 477
BseDI CCNNGG 5 cut(s) 121, 303, 475, 664, 861
BseGI GGATG 1 cut(s) 350
BseLI CCNNNNNNNGG 3 cut(s) 122, 388, 836
BseMII CTCAG 4 cut(s) 59, 806, 820, 951
BseNI ACTGG 1 cut(s) 796
BsePI GCGCGC 1 cut(s) 187
BseSI GKGCMC 1 cut(s) 830
BseXI GCAGC 5 cut(s) 141, 286, 499, 897, 1013
Bsh1236I CGCG 2 cut(s) 189, 724
Bsh1285I CGRYCG 1 cut(s) 98
BshFI GGCC 1 cut(s) 633
BsiEI CGRYCG 1 cut(s) 98
BsiHKAI GWGCWC 3 cut(s) 179, 282, 706
BslFI GGGAC 4 cut(s) 34, 566, 778, 857
BslI CCNNNNNNNGG 3 cut(s) 122, 388, 836
BsmFI GGGAC 4 cut(s) 34, 566, 778, 857
BsmI GAATGC 1 cut(s) 476
BsnI GGCC 1 cut(s) 633
Bsp119I TTCGAA 1 cut(s) 765
Bsp1286I GDGCHC 4 cut(s) 179, 282, 706, 830
Bsp143I GATC 8 cut(s) 95, 286, 353, 496, 818, 940, 969, 1006
Bsp19I CCATGG 1 cut(s) 861
BspACI CCGC 3 cut(s) 724, 756, 858
BspANI GGCC 1 cut(s) 633
BspCNI CTCAG 4 cut(s) 58, 807, 819, 950
BspFNI CGCG 2 cut(s) 189, 724
BspLI GGNNCC 1 cut(s) 114
BspMI ACCTGC 2 cut(s) 182, 1098
BspOI GCTAGC 1 cut(s) 591
BspPI GGATC 4 cut(s) 281, 361, 977, 1001
BspT104I TTCGAA 1 cut(s) 765
BsrI ACTGG 1 cut(s) 796
BssECI CCNNGG 5 cut(s) 121, 303, 475, 664, 861
BssHII GCGCGC 1 cut(s) 187
BssMI GATC 8 cut(s) 95, 286, 353, 496, 818, 940, 969, 1006
BssT1I CCWWGG 4 cut(s) 121, 303, 664, 861
Bst2UI CCWGG 1 cut(s) 477
Bst4CI ACNGT 2 cut(s) 241, 332
BstAPI GCANNNNNTGC 2 cut(s) 151, 521
BstBAI YACGTR 1 cut(s) 871
BstBI TTCGAA 1 cut(s) 765
BstC8I GCNNGC 3 cut(s) 185, 189, 589
BstDEI CTNAG 4 cut(s) 45, 806, 815, 937
BstDSI CCRYGG 1 cut(s) 861
BstEII GGTNACC 1 cut(s) 194
BstF5I GGATG 1 cut(s) 350
BstFNI CGCG 2 cut(s) 189, 724
BstHHI GCGC 4 cut(s) 189, 191, 494, 724
BstKTI GATC 8 cut(s) 98, 289, 356, 499, 821, 943, 972, 1009
BstMBI GATC 8 cut(s) 95, 286, 353, 496, 818, 940, 969, 1006
BstMCI CGRYCG 1 cut(s) 98
BstMWI GCNNNNNNNGC 2 cut(s) 151, 521
BstNI CCWGG 1 cut(s) 477
BstNSI RCATGY 1 cut(s) 234
BstPI GGTNACC 1 cut(s) 194
BstSCI CCNGG 1 cut(s) 475
BstSLI GKGCMC 1 cut(s) 830
BstUI CGCG 2 cut(s) 189, 724
BstV1I GCAGC 5 cut(s) 141, 286, 499, 897, 1013
BsuRI GGCC 1 cut(s) 633
BtgI CCRYGG 1 cut(s) 861
BtrI CACGTC 1 cut(s) 825
BtsCI GGATG 1 cut(s) 350
BveI ACCTGC 2 cut(s) 182, 1098
Cac8I GCNNGC 3 cut(s) 185, 189, 589
CfoI GCGC 4 cut(s) 189, 191, 494, 724
Cfr13I GGNCC 1 cut(s) 542
Csp6I GTAC 1 cut(s) 952
CviAII CATG 5 cut(s) 15, 231, 489, 718, 862
CviQI GTAC 1 cut(s) 952
DdeI CTNAG 4 cut(s) 45, 806, 815, 937
DpnI GATC 8 cut(s) 97, 288, 355, 498, 820, 942, 971, 1008
DpnII GATC 8 cut(s) 95, 286, 353, 496, 818, 940, 969, 1006
DraI TTTAAA 1 cut(s) 423
Ecl136II GAGCTC 1 cut(s) 704
Eco130I CCWWGG 4 cut(s) 121, 303, 664, 861
Eco147I AGGCCT 1 cut(s) 633
Eco24I GRGCYC 1 cut(s) 706
Eco47I GGWCC 1 cut(s) 542
Eco53kI GAGCTC 1 cut(s) 704
Eco91I GGTNACC 1 cut(s) 194
EcoICRI GAGCTC 1 cut(s) 704
EcoO65I GGTNACC 1 cut(s) 194
EcoRI GAATTC 1 cut(s) 761
EcoRII CCWGG 1 cut(s) 475
EcoT14I CCWWGG 4 cut(s) 121, 303, 664, 861
EcoT38I GRGCYC 1 cut(s) 706
ErhI CCWWGG 4 cut(s) 121, 303, 664, 861
FaeI CATG 5 cut(s) 18, 234, 492, 721, 865
FaqI GGGAC 4 cut(s) 34, 566, 778, 857
FatI CATG 5 cut(s) 14, 230, 488, 717, 861
Fnu4HI GCNGC 6 cut(s) 155, 300, 513, 757, 911, 1002
FokI GGATG 1 cut(s) 357
FriOI GRGCYC 1 cut(s) 706
Fsp4HI GCNGC 6 cut(s) 155, 300, 513, 757, 911, 1002
FspBI CTAG 6 cut(s) 158, 365, 563, 588, 833, 957
GlaI GCGC 4 cut(s) 188, 190, 493, 723
GluI GCNGC 6 cut(s) 155, 300, 513, 757, 911, 1002
HaeIII GGCC 1 cut(s) 633
HhaI GCGC 4 cut(s) 189, 191, 494, 724
Hin1II CATG 5 cut(s) 18, 234, 492, 721, 865
Hin6I GCGC 4 cut(s) 187, 189, 492, 722
HinP1I GCGC 4 cut(s) 187, 189, 492, 722
HincII GTYRAC 4 cut(s) 207, 442, 1066, 1117
HindII GTYRAC 4 cut(s) 207, 442, 1066, 1117
HindIII AAGCTT 2 cut(s) 399, 1075
HinfI GANTC 8 cut(s) 447, 464, 480, 529, 575, 780, 874, 1037
HpaI GTTAAC 2 cut(s) 207, 1066
HphI GGTGA 2 cut(s) 206, 1057
Hpy166II GTNNAC 5 cut(s) 207, 442, 542, 1066, 1117
Hpy188I TCNGA 8 cut(s) 131, 237, 286, 434, 469, 639, 940, 1036
Hpy188III TCNNGA 5 cut(s) 451, 699, 777, 878, 944
Hpy8I GTNNAC 5 cut(s) 207, 442, 542, 1066, 1117
Hpy99I CGWCG 2 cut(s) 793, 826
HpyAV CCTTC 4 cut(s) 126, 145, 623, 644
HpyCH4III ACNGT 2 cut(s) 241, 332
HpyCH4IV ACGT 6 cut(s) 209, 555, 735, 824, 852, 870
HpyF10VI GCNNNNNNNGC 2 cut(s) 151, 521
HpyF3I CTNAG 4 cut(s) 45, 806, 815, 937
HpySE526I ACGT 6 cut(s) 209, 555, 735, 824, 852, 870
Hsp92II CATG 5 cut(s) 18, 234, 492, 721, 865
HspAI GCGC 4 cut(s) 187, 189, 492, 722
KspAI GTTAAC 2 cut(s) 207, 1066
Kzo9I GATC 8 cut(s) 95, 286, 353, 496, 818, 940, 969, 1006
LmnI GCTCC 2 cut(s) 118, 701
Lsp1109I GCAGC 5 cut(s) 141, 286, 499, 897, 1013
LweI GCATC 1 cut(s) 511
MaeI CTAG 6 cut(s) 158, 365, 563, 588, 833, 957
MaeII ACGT 6 cut(s) 209, 555, 735, 824, 852, 870
MaeIII GTNAC 5 cut(s) 194, 293, 676, 853, 871
MalI GATC 8 cut(s) 97, 288, 355, 498, 820, 942, 971, 1008
MboI GATC 8 cut(s) 95, 286, 353, 496, 818, 940, 969, 1006
MboII GAAGA 6 cut(s) 268, 406, 491, 579, 1003, 1012
MfeI CAATTG 2 cut(s) 711, 1011
MhlI GDGCHC 4 cut(s) 179, 282, 706, 830
MluCI AATT 7 cut(s) 435, 653, 711, 761, 892, 1011, 1102
MlyI GAGTC 2 cut(s) 868, 1046
MmeI TCCRAC 3 cut(s) 154, 192, 260
MnlI CCTC 9 cut(s) 89, 102, 210, 300, 361, 570, 598, 815, 916
MroXI GAANNNNTTC 3 cut(s) 484, 574, 633
MseI TTAA 3 cut(s) 206, 422, 1065
MslI CAYNNNNRTG 2 cut(s) 13, 683
MspA1I CMGCKG 1 cut(s) 1004
MspR9I CCNGG 1 cut(s) 477
MunI CAATTG 2 cut(s) 711, 1011
Mva1269I GAATGC 1 cut(s) 476
MvaI CCWGG 1 cut(s) 477
MvnI CGCG 2 cut(s) 189, 724
MwoI GCNNNNNNNGC 2 cut(s) 151, 521
NcoI CCATGG 1 cut(s) 861
NdeII GATC 8 cut(s) 95, 286, 353, 496, 818, 940, 969, 1006
NheI GCTAGC 1 cut(s) 587
NlaIII CATG 5 cut(s) 18, 234, 492, 721, 865
NlaIV GGNNCC 1 cut(s) 114
NmuCI GTSAC 3 cut(s) 194, 676, 871
NspI RCATGY 1 cut(s) 234
NspV TTCGAA 1 cut(s) 765
PaqCI CACCTGC 1 cut(s) 182
PauI GCGCGC 1 cut(s) 187
PceI AGGCCT 1 cut(s) 633
PcsI WCGNNNNNNNCGW 1 cut(s) 876
PctI GAATGC 1 cut(s) 476
PdmI GAANNNNTTC 3 cut(s) 484, 574, 633
PfeI GAWTC 6 cut(s) 447, 464, 480, 529, 575, 780
PflMI CCANNNNNTGG 1 cut(s) 836
PkrI GCNGC 6 cut(s) 156, 301, 514, 758, 912, 1003
Ple19I CGATCG 1 cut(s) 98
PleI GAGTC 2 cut(s) 868, 1045
PpsI GAGTC 2 cut(s) 868, 1045
Ppu21I YACGTR 1 cut(s) 871
Psp124BI GAGCTC 1 cut(s) 706
Psp1406I AACGTT 1 cut(s) 209
Psp6I CCWGG 1 cut(s) 475
PspEI GGTNACC 1 cut(s) 194
PspGI CCWGG 1 cut(s) 475
PspN4I GGNNCC 1 cut(s) 114
PspPI GGNCC 1 cut(s) 542
PteI GCGCGC 1 cut(s) 187
PvuI CGATCG 1 cut(s) 98
PvuII CAGCTG 1 cut(s) 1004
RsaI GTAC 1 cut(s) 953
RsaNI GTAC 1 cut(s) 952
RseI CAYNNNNRTG 2 cut(s) 13, 683
SacI GAGCTC 1 cut(s) 706
SaqAI TTAA 3 cut(s) 206, 422, 1065
SatI GCNGC 6 cut(s) 155, 300, 513, 757, 911, 1002
Sau3AI GATC 8 cut(s) 95, 286, 353, 496, 818, 940, 969, 1006
Sau96I GGNCC 1 cut(s) 542
SchI GAGTC 2 cut(s) 868, 1046
ScrFI CCNGG 1 cut(s) 477
SduI GDGCHC 4 cut(s) 179, 282, 706, 830
SfaNI GCATC 1 cut(s) 511
SfuI TTCGAA 1 cut(s) 765
SinI GGWCC 1 cut(s) 542
SmiMI CAYNNNNRTG 2 cut(s) 13, 683
SpeI ACTAGT 1 cut(s) 832
Sse9I AATT 7 cut(s) 435, 653, 711, 761, 892, 1011, 1102
SseBI AGGCCT 1 cut(s) 633
SsiI CCGC 3 cut(s) 724, 756, 858
SspI AATATT 1 cut(s) 1060
SspMI CTAG 6 cut(s) 158, 365, 563, 588, 833, 957
SstI GAGCTC 1 cut(s) 706
StuI AGGCCT 1 cut(s) 633
StyD4I CCNGG 1 cut(s) 475
StyI CCWWGG 4 cut(s) 121, 303, 664, 861
TaaI ACNGT 2 cut(s) 241, 332
TaiI ACGT 6 cut(s) 212, 558, 738, 827, 855, 873
TaqI TCGA 8 cut(s) 94, 378, 462, 765, 821, 972, 1023, 1040
TasI AATT 7 cut(s) 435, 653, 711, 761, 892, 1011, 1102
TatI WGTACW 1 cut(s) 951
TauI GCSGC 1 cut(s) 759
TfiI GAWTC 6 cut(s) 447, 464, 480, 529, 575, 780
Tru1I TTAA 3 cut(s) 206, 422, 1065
Tru9I TTAA 3 cut(s) 206, 422, 1065
TseFI GTSAC 3 cut(s) 194, 676, 871
TseI GCWGC 5 cut(s) 154, 299, 512, 910, 1001
Tsp45I GTSAC 3 cut(s) 194, 676, 871
TspDTI ATGAA 3 cut(s) 477, 642, 1086
TspGWI ACGGA 3 cut(s) 157, 192, 777
Van91I CCANNNNNTGG 1 cut(s) 836
VpaK11BI GGWCC 1 cut(s) 542
XapI RAATTY 2 cut(s) 653, 761
XceI RCATGY 1 cut(s) 234
XmnI GAANNNNTTC 3 cut(s) 484, 574, 633
XspI CTAG 6 cut(s) 158, 365, 563, 588, 833, 957
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.