pycom13g04970

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0012004
Physical Location & Seq
Forward (+)
3338104 .. 3340957
2854 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1002 bp
ATGAGAACCGCCACGAAAGGCAACCAGGAGGAGGATGAGTACGACGAGGAGGAGTTTGGCTCCAGGAAAGAAGGTCCTTCCAATTCCAACAGCAAAGATGCTAAGAACAACGATAAGGCTAGTGCTATTCGATCGAAACATTCAGTCACAGAGCAGAGGAGGAGGAGCAAGATCAATGAGAGGTTCCAGATATTGAGAGATCTAATACCCCATAGTGATCAGAAAAGAGATACGGCATCATTCCTGCTCGAGGTGATCGAGTATGTCCAGTACTTACAGGAAAAAGTCCACAAATATGAAGGTTCATACCAGGGTTGGAGTCCTGAGCCCACAAAGTTGATGCCATGGAGAAACAGTCACTGGCGTGTTCAGAGTTTTGTTGGTAATCCTCAGGCCATAAAAAGTGACACTGCACCGGTGTCACCATTTCCTGGGAAATTTGATGAAAATAACATCTCTATCAATCCGAACATGCTGGGAAACAGCACTTCGAATCCAGTAGAAACTGACCCTAGCAGGGATGTTGCCTCCAAAATAGTGGATCAGCAACCTGAGATAGTGAACAAGAGGATTCCTCTGCCTATGCCACTACCAAACATTACTCCCCCGGTCAGAAGTGGTGGTGTGCTTGCCCATCCTCTCCAGGGACAAATTTCTGATGCTCAATCAACTCAGTGTCCCACCACTAGTGCTAGTGATGCACTGAGCCAACACGAGCAGCTGACAGTTGAAGGAGGAACAATAAGCATCTCAAGTGTTTATTCACAAGGGTTATTAAACTCTCTGAGCCAAGTGCTGCAGAGTGCAGGTGTTGATCTGTCGCATGCTAGTATCTCAGTGCAGATCGATCTTGGGAATCGTGCAAACCGAGGGCTGTCCTCTGGAACACCAGCTTCTAAGGATAATGAGAATCCCCATTCAAGCAATCAGATGATGGCGCATTTTAGGGACGCTGGCAGTGGAGAGGACTCCGATCGAGCTCATAAGCGCCTCAAGACATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
HLH

Protein Analysis

334

Amino Acids

36.72

Weight (kDa)

6.22

Isoelectric Point (pI)

54.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 44 - 93 1.3e-14 Helix-loop-helix DNA-binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012004)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G69010
fragaria_vesca FvH4_4g29230 FvH4_4g29230
malus_domestica MD13G1056100.v1.1 MD16G1055100.v1.1
prunus_persica Prupe.1G294200_v2.0.a1 Prupe.1G294200_v2.0.a1
pyrus_communis pycom13g04970 pycom16g04800
rosa_chinensis RchiOBHm_Chr4g0437281
rosa_laevigata RLG00000006450
rosa_multiflora Rmu_sc0004339.1_g000031
rosa_roxburghii Rroxscaffold_5G00378420
rosa_rugosa Rorug04G0299200
rosa_samantha Rh4AG354000 Rh4BG363900 Rh4CG378200 Rh4DG357900
rosa_wichuraiana Rw4G031050

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 797
Acc36I ACCTGC 1 cut(s) 797
AccB7I CCANNNNNTGG 1 cut(s) 431
AciI CCGC 1 cut(s) 9
AclWI GGATC 1 cut(s) 549
AcsI RAATTY 2 cut(s) 437, 651
AfaI GTAC 2 cut(s) 41, 272
AfiI CCNNNNNNNGG 5 cut(s) 31, 250, 431, 517, 644
AgeI ACCGGT 1 cut(s) 415
AgsI TTSAA 2 cut(s) 731, 921
AhlI ACTAGT 1 cut(s) 686
AjnI CCWGG 5 cut(s) 24, 62, 309, 430, 642
AleI CACNNNNGTG 1 cut(s) 363
AluBI AGCT 3 cut(s) 721, 893, 980
AluI AGCT 3 cut(s) 721, 893, 980
Alw21I GWGCWC 1 cut(s) 982
AlwI GGATC 1 cut(s) 549
AlwNI CAGNNNCTG 1 cut(s) 360
Ama87I CYCGRG 1 cut(s) 248
AoxI GGCC 1 cut(s) 393
ApeKI GCWGC 2 cut(s) 718, 796
ApoI RAATTY 2 cut(s) 437, 651
AsiGI ACCGGT 1 cut(s) 415
AspLEI GCGC 2 cut(s) 940, 990
AspS9I GGNCC 1 cut(s) 74
AsuC2I CCSGG 1 cut(s) 608
AsuHPI GGTGA 2 cut(s) 265, 414
AsuII TTCGAA 1 cut(s) 491
AvaI CYCGRG 1 cut(s) 248
AvaII GGWCC 1 cut(s) 74
AxyI CCTNAGG 1 cut(s) 390
BanII GRGCYC 2 cut(s) 330, 982
BauI CACGAG 1 cut(s) 713
Bbv12I GWGCWC 1 cut(s) 982
BbvI GCAGC 2 cut(s) 730, 783
BccI CCATC 2 cut(s) 642, 928
BceAI ACGGC 1 cut(s) 249
BciT130I CCWGG 5 cut(s) 26, 64, 311, 432, 644
BclI TGATCA 1 cut(s) 217
BcnI CCSGG 1 cut(s) 608
BcuI ACTAGT 1 cut(s) 686
BfaI CTAG 5 cut(s) 120, 513, 687, 693, 828
BfmI CTRYAG 1 cut(s) 797
BfoI RGCGCY 1 cut(s) 991
BfuAI ACCTGC 1 cut(s) 797
BglII AGATCT 1 cut(s) 199
BisI GCNGC 2 cut(s) 719, 797
BlsI GCNGC 2 cut(s) 720, 798
BmcAI AGTACT 1 cut(s) 272
Bme1390I CCNGG 6 cut(s) 26, 64, 311, 432, 608, 644
Bme18I GGWCC 1 cut(s) 74
BmeT110I CYCGRG 1 cut(s) 248
BmgT120I GGNCC 1 cut(s) 74
BmiI GGNNCC 2 cut(s) 61, 185
BmrFI CCNGG 6 cut(s) 26, 64, 311, 432, 608, 644
BmsI GCATC 6 cut(s) 88, 245, 330, 649, 688, 756
BplI GAGNNNNNCTC 4 cut(s) 44, 76, 559, 591
BpmI CTGGAG 2 cut(s) 46, 626
Bpu10I CCTNAGC 1 cut(s) 324
Bpu14I TTCGAA 1 cut(s) 491
BpuEI CTTGAG 2 cut(s) 736, 977
BpuMI CCSGG 1 cut(s) 608
Bsa29I ATCGAT 1 cut(s) 846
BsaJI CCNNGG 6 cut(s) 310, 344, 431, 606, 643, 868
BsaWI WCCGGW 1 cut(s) 415
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 340, 370
Bsc4I CCNNNNNNNGG 5 cut(s) 31, 250, 431, 517, 644
Bse118I RCCGGY 1 cut(s) 415
Bse1I ACTGG 3 cut(s) 268, 365, 497
Bse21I CCTNAGG 1 cut(s) 390
BseBI CCWGG 5 cut(s) 26, 64, 311, 432, 644
BseCI ATCGAT 1 cut(s) 846
BseDI CCNNGG 6 cut(s) 310, 344, 431, 606, 643, 868
BseGI GGATG 3 cut(s) 40, 526, 634
BseLI CCNNNNNNNGG 5 cut(s) 31, 250, 431, 517, 644
BseMII CTCAG 7 cut(s) 315, 404, 543, 686, 695, 776, 849
BseNI ACTGG 3 cut(s) 268, 365, 497
BseRI GAGGAG 6 cut(s) 44, 62, 65, 172, 175, 178
BseXI GCAGC 2 cut(s) 730, 783
BseYI CCCAGC 1 cut(s) 475
BsgI GTGCAG 3 cut(s) 396, 825, 860
Bsh1285I CGRYCG 2 cut(s) 134, 976
BshFI GGCC 1 cut(s) 395
BshTI ACCGGT 1 cut(s) 415
BshVI ATCGAT 1 cut(s) 846
BsiEI CGRYCG 2 cut(s) 134, 976
BsiHKAI GWGCWC 1 cut(s) 982
BsiHKCI CYCGRG 1 cut(s) 248
BsiSI CCGG 2 cut(s) 416, 608
BslFI GGGAC 3 cut(s) 660, 663, 962
BslI CCNNNNNNNGG 5 cut(s) 31, 250, 431, 517, 644
BsmFI GGGAC 3 cut(s) 660, 663, 962
BsnI GGCC 1 cut(s) 395
BsoBI CYCGRG 1 cut(s) 248
Bsp119I TTCGAA 1 cut(s) 491
Bsp1286I GDGCHC 2 cut(s) 330, 982
Bsp19I CCATGG 1 cut(s) 344
BspACI CCGC 1 cut(s) 9
BspANI GGCC 1 cut(s) 395
BspCNI CTCAG 7 cut(s) 316, 403, 544, 685, 696, 777, 848
BspDI ATCGAT 1 cut(s) 846
BspLI GGNNCC 2 cut(s) 61, 185
BspMAI CTGCAG 1 cut(s) 801
BspMI ACCTGC 1 cut(s) 797
BspPI GGATC 1 cut(s) 549
BspT104I TTCGAA 1 cut(s) 491
BsrFI RCCGGY 1 cut(s) 415
BsrI ACTGG 3 cut(s) 268, 365, 497
BssAI RCCGGY 1 cut(s) 415
BssECI CCNNGG 6 cut(s) 310, 344, 431, 606, 643, 868
BssSI CACGAG 1 cut(s) 713
BssT1I CCWWGG 1 cut(s) 344
Bst2BI CACGAG 1 cut(s) 713
Bst2UI CCWGG 5 cut(s) 26, 64, 311, 432, 644
Bst4CI ACNGT 2 cut(s) 356, 727
BstBI TTCGAA 1 cut(s) 491
BstC8I GCNNGC 3 cut(s) 630, 825, 955
BstDEI CTNAG 9 cut(s) 102, 324, 390, 552, 672, 704, 785, 835, 897
BstDSI CCRYGG 1 cut(s) 344
BstENI CCTNNNNNAGG 1 cut(s) 248
BstF5I GGATG 3 cut(s) 40, 526, 634
BstH2I RGCGCY 1 cut(s) 991
BstHHI GCGC 2 cut(s) 940, 990
BstMCI CGRYCG 2 cut(s) 134, 976
BstMWI GCNNNNNNNGC 1 cut(s) 698
BstNI CCWGG 5 cut(s) 26, 64, 311, 432, 644
BstNSI RCATGY 2 cut(s) 475, 827
BstSCI CCNGG 6 cut(s) 24, 62, 309, 430, 606, 642
BstSFI CTRYAG 1 cut(s) 797
BstV1I GCAGC 2 cut(s) 730, 783
BstX2I RGATCY 1 cut(s) 199
BstXI CCANNNNNNTGG 1 cut(s) 538
BstYI RGATCY 1 cut(s) 199
Bsu15I ATCGAT 1 cut(s) 846
Bsu36I CCTNAGG 1 cut(s) 390
BsuRI GGCC 1 cut(s) 395
BsuTUI ATCGAT 1 cut(s) 846
BtgI CCRYGG 1 cut(s) 344
BtsCI GGATG 3 cut(s) 40, 526, 634
BtsI GCAGTG 2 cut(s) 408, 964
BtsIMutI CAGTG 6 cut(s) 358, 408, 680, 701, 843, 964
BveI ACCTGC 1 cut(s) 797
Cac8I GCNNGC 3 cut(s) 630, 825, 955
CaiI CAGNNNCTG 1 cut(s) 360
CfoI GCGC 2 cut(s) 940, 990
Cfr10I RCCGGY 1 cut(s) 415
Cfr13I GGNCC 1 cut(s) 74
ClaI ATCGAT 1 cut(s) 846
CseI GACGC 1 cut(s) 959
Csp6I GTAC 2 cut(s) 40, 271
CspAI ACCGGT 1 cut(s) 415
CviAII CATG 3 cut(s) 345, 472, 824
CviQI GTAC 2 cut(s) 40, 271
DdeI CTNAG 9 cut(s) 102, 324, 390, 552, 672, 704, 785, 835, 897
Ecl136II GAGCTC 1 cut(s) 980
Eco130I CCWWGG 1 cut(s) 344
Eco24I GRGCYC 2 cut(s) 330, 982
Eco47I GGWCC 1 cut(s) 74
Eco53kI GAGCTC 1 cut(s) 980
Eco81I CCTNAGG 1 cut(s) 390
Eco88I CYCGRG 1 cut(s) 248
EcoICRI GAGCTC 1 cut(s) 980
EcoNI CCTNNNNNAGG 1 cut(s) 248
EcoO109I RGGNCCY 1 cut(s) 74
EcoRII CCWGG 5 cut(s) 24, 62, 309, 430, 642
EcoT14I CCWWGG 1 cut(s) 344
EcoT38I GRGCYC 2 cut(s) 330, 982
ErhI CCWWGG 1 cut(s) 344
FaeI CATG 3 cut(s) 348, 475, 827
FaqI GGGAC 3 cut(s) 660, 663, 962
FatI CATG 3 cut(s) 344, 471, 823
FbaI TGATCA 1 cut(s) 217
Fnu4HI GCNGC 2 cut(s) 719, 797
FokI GGATG 3 cut(s) 47, 533, 621
FriOI GRGCYC 2 cut(s) 330, 982
Fsp4HI GCNGC 2 cut(s) 719, 797
FspBI CTAG 5 cut(s) 120, 513, 687, 693, 828
GlaI GCGC 2 cut(s) 939, 989
GluI GCNGC 2 cut(s) 719, 797
GsaI CCCAGC 1 cut(s) 479
GsuI CTGGAG 2 cut(s) 46, 626
HaeII RGCGCY 1 cut(s) 991
HaeIII GGCC 1 cut(s) 395
HapII CCGG 2 cut(s) 416, 608
HgaI GACGC 1 cut(s) 959
HhaI GCGC 2 cut(s) 940, 990
Hin1II CATG 3 cut(s) 348, 475, 827
Hin6I GCGC 2 cut(s) 938, 988
HinP1I GCGC 2 cut(s) 938, 988
HinfI GANTC 6 cut(s) 319, 493, 571, 856, 910, 968
HpaII CCGG 2 cut(s) 416, 608
HphI GGTGA 2 cut(s) 265, 414
Hpy166II GTNNAC 2 cut(s) 289, 562
Hpy188I TCNGA 8 cut(s) 222, 372, 468, 614, 658, 786, 930, 973
Hpy188III TCNNGA 4 cut(s) 187, 323, 882, 994
Hpy8I GTNNAC 2 cut(s) 289, 562
Hpy99I CGWCG 1 cut(s) 47
HpyAV CCTTC 4 cut(s) 65, 87, 293, 725
HpyCH4III ACNGT 2 cut(s) 356, 727
HpyCH4V TGCA 6 cut(s) 413, 701, 799, 806, 841, 863
HpyF10VI GCNNNNNNNGC 1 cut(s) 698
HpyF3I CTNAG 9 cut(s) 102, 324, 390, 552, 672, 704, 785, 835, 897
Hsp92II CATG 3 cut(s) 348, 475, 827
HspAI GCGC 2 cut(s) 938, 988
Ksp22I TGATCA 1 cut(s) 217
LmnI GCTCC 2 cut(s) 65, 165
Lsp1109I GCAGC 2 cut(s) 730, 783
LweI GCATC 6 cut(s) 88, 245, 330, 649, 688, 756
MaeI CTAG 5 cut(s) 120, 513, 687, 693, 828
MaeIII GTNAC 4 cut(s) 145, 356, 404, 420
MflI RGATCY 1 cut(s) 199
MhlI GDGCHC 2 cut(s) 330, 982
MluCI AATT 3 cut(s) 82, 437, 651
MlyI GAGTC 2 cut(s) 328, 962
MmeI TCCRAC 2 cut(s) 111, 296
MseI TTAA 1 cut(s) 776
MslI CAYNNNNRTG 2 cut(s) 294, 363
MspA1I CMGCKG 1 cut(s) 721
MspI CCGG 2 cut(s) 416, 608
MspR9I CCNGG 6 cut(s) 26, 64, 311, 432, 608, 644
MvaI CCWGG 5 cut(s) 26, 64, 311, 432, 644
MwoI GCNNNNNNNGC 1 cut(s) 698
NciI CCSGG 1 cut(s) 608
NcoI CCATGG 1 cut(s) 344
NlaIII CATG 3 cut(s) 348, 475, 827
NlaIV GGNNCC 2 cut(s) 61, 185
NmuCI GTSAC 4 cut(s) 145, 356, 404, 420
NspI RCATGY 2 cut(s) 475, 827
NspV TTCGAA 1 cut(s) 491
OliI CACNNNNGTG 1 cut(s) 363
PaeI GCATGC 1 cut(s) 827
PaeR7I CTCGAG 1 cut(s) 248
PaqCI CACCTGC 1 cut(s) 797
PcsI WCGNNNNNNNCGW 2 cut(s) 255, 865
PfeI GAWTC 4 cut(s) 493, 571, 856, 910
PflMI CCANNNNNTGG 1 cut(s) 431
PfoI TCCNGGA 1 cut(s) 62
PinAI ACCGGT 1 cut(s) 415
PkrI GCNGC 2 cut(s) 720, 798
Ple19I CGATCG 2 cut(s) 134, 976
PleI GAGTC 2 cut(s) 327, 962
PpsI GAGTC 2 cut(s) 327, 962
PpuMI RGGWCCY 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 982
Psp5II RGGWCCY 1 cut(s) 74
Psp6I CCWGG 5 cut(s) 24, 62, 309, 430, 642
PspFI CCCAGC 1 cut(s) 475
PspGI CCWGG 5 cut(s) 24, 62, 309, 430, 642
PspN4I GGNNCC 2 cut(s) 61, 185
PspPI GGNCC 1 cut(s) 74
PspPPI RGGWCCY 1 cut(s) 74
PspXI VCTCGAGB 1 cut(s) 248
PstI CTGCAG 1 cut(s) 801
PstNI CAGNNNCTG 1 cut(s) 360
PsuI RGATCY 1 cut(s) 199
PvuI CGATCG 2 cut(s) 134, 976
PvuII CAGCTG 1 cut(s) 721
RsaI GTAC 2 cut(s) 41, 272
RsaNI GTAC 2 cut(s) 40, 271
RseI CAYNNNNRTG 2 cut(s) 294, 363
SacI GAGCTC 1 cut(s) 982
SaqAI TTAA 1 cut(s) 776
SatI GCNGC 2 cut(s) 719, 797
Sau96I GGNCC 1 cut(s) 74
ScaI AGTACT 1 cut(s) 272
SchI GAGTC 2 cut(s) 328, 962
ScrFI CCNGG 6 cut(s) 26, 64, 311, 432, 608, 644
SduI GDGCHC 2 cut(s) 330, 982
SetI ASST 9 cut(s) 76, 185, 255, 304, 553, 723, 811, 895, 982
SfaNI GCATC 6 cut(s) 88, 245, 330, 649, 688, 756
SfcI CTRYAG 1 cut(s) 797
Sfr274I CTCGAG 1 cut(s) 248
SfuI TTCGAA 1 cut(s) 491
SgrAI CRCCGGYG 1 cut(s) 415
SinI GGWCC 1 cut(s) 74
SlaI CTCGAG 1 cut(s) 248
SmiMI CAYNNNNRTG 2 cut(s) 294, 363
SmlI CTYRAG 3 cut(s) 248, 751, 992
SmoI CTYRAG 3 cut(s) 248, 751, 992
SpeI ACTAGT 1 cut(s) 686
SphI GCATGC 1 cut(s) 827
Sse9I AATT 3 cut(s) 82, 437, 651
SsiI CCGC 1 cut(s) 9
SspMI CTAG 5 cut(s) 120, 513, 687, 693, 828
SstI GAGCTC 1 cut(s) 982
StyD4I CCNGG 6 cut(s) 24, 62, 309, 430, 606, 642
StyI CCWWGG 1 cut(s) 344
TaaI ACNGT 2 cut(s) 356, 727
TaqI TCGA 7 cut(s) 130, 134, 249, 258, 491, 846, 976
TasI AATT 3 cut(s) 82, 437, 651
TatI WGTACW 1 cut(s) 270
TfiI GAWTC 4 cut(s) 493, 571, 856, 910
Tru1I TTAA 1 cut(s) 776
Tru9I TTAA 1 cut(s) 776
TscAI CASTG 6 cut(s) 365, 415, 680, 708, 843, 964
TseFI GTSAC 4 cut(s) 145, 356, 404, 420
TseI GCWGC 2 cut(s) 718, 796
Tsp45I GTSAC 4 cut(s) 145, 356, 404, 420
TspDTI ATGAA 3 cut(s) 294, 312, 459
TspRI CASTG 6 cut(s) 365, 415, 680, 708, 843, 964
Van91I CCANNNNNTGG 1 cut(s) 431
VpaK11BI GGWCC 1 cut(s) 74
XagI CCTNNNNNAGG 1 cut(s) 248
XapI RAATTY 2 cut(s) 437, 651
XceI RCATGY 2 cut(s) 475, 827
XhoI CTCGAG 1 cut(s) 248
XspI CTAG 5 cut(s) 120, 513, 687, 693, 828
ZrmI AGTACT 1 cut(s) 272
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.