pycom13g11810

nucleotide exchange factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0009449
Physical Location & Seq
Forward (+)
8166713 .. 8168481
1769 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1167 bp
ATGGCGCGCGTGAGTTCATGGATCTTAGTGCTGATGGTGGTGGCGATGGCCGTGAGGGCGGAGCAAAATATTAACAATACGGGAAAGGTATATTGGTCCAGCGCAGAAGACGAGGCGCAGGCTCAGACTCGGACTCAGCCTCGGGACGAAGATACCGCCGTCGCTGACCTTGACGCCGACGGCGGCTTCTCTTCTCTGGAGGGAATGTTACAGTGGGCTATAGGCCACTCCGATCCCGTCCAATTGAAAGAAAAGGCGCGAGATGTCGAGCGATTGTCTCCCGCAGACCTAAACGACCGCCGGCTAGAGATAAAGCAGCTCATGGACGAGCTGAAGACGCCGTCGGACGCGCAGCTGATGCAGATTGCGATTGACGACTTGAGTAACTCGTCGCTGTCGTTGGAAGATCGGCACCGTGCTCTGGAGGAACTGCTGGTGCTGGTGGAGCCGATTGATAACGCAAATGATTTGAACAAGCTTGGGGGGATTGCTGCGGTTATACGAGAGCTTAATCATGGTGATGCAGATACAAGAAAATTGGCTGCTTGGGTGCTTGGGACGGCCAGTCAGAACAACCCAGTTGTTCAGAAGCAGGTTCTGGAACATGGGGCATTGCCCAAGCTAGTAAAGATGGTGAAATCTAGCTTTGTAGAAGAAGCTACTAAGGCATTGTTTGCCGTTTCGGCGTTGATCCGAAATAATGTAGCTGGGCAAGAGTTGTTCTATGTGGAAGATGGGCATTTAGTCCTTCAGGACATTATGAGTGATGCAAGCATTGATATCAGACTGCGAAGGAAAGCGGTGTTTCTTCTTGGTGATCTTGCTGAGTGTCAATTGGAAAACATGGATAAGGATGAGCTGCCCTTTTTCAGTAATCGGGTTTTCTTGAAGTCTGTGGTTGATCTAACATCATCTGCTGACCTTGATTTGCAGGAGAAGGCCCTTATCGCGCTTAAGAATCTTCTGCAACTGAGGACAACCGAAGCTCTGGTTTTTAAGAACTTTTGTGGGTTGGATGGTGCCTTGGAGAGATTGAGGCAGCGACTGCAGGGTTTATTGGTAGACGAAGACCACAGAGATTATGCGGTGGAAGTGGAAAGCATCCGCAGTGAAGTGCAGCAGATTTTTGATAGAAAGTTGGAAAAGGTAACGCGAGTTCCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Fes1

Protein Analysis

389

Amino Acids

43.35

Weight (kDa)

4.84

Isoelectric Point (pI)

37.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Fes1 PF08609 66 - 157 4.7e-18 Nucleotide exchange factor Fes1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 583
AccB1I GGYRCC 2 cut(s) 411, 1019
AccI GTMKAC 1 cut(s) 1062
AccII CGCG 6 cut(s) 7, 9, 259, 350, 950, 1153
AciI CCGC 9 cut(s) 59, 156, 183, 282, 298, 494, 800, 1085, 1105
AclWI GGATC 3 cut(s) 29, 227, 685
AcoI YGGCCR 2 cut(s) 48, 561
AcuI CTGAAG 2 cut(s) 353, 734
AcyI GRCGYC 2 cut(s) 174, 338
AfiI CCNNNNNNNGG 1 cut(s) 421
AflII CTTAAG 1 cut(s) 953
AgsI TTSAA 3 cut(s) 247, 472, 889
AhdI GACNNNNNGTC 1 cut(s) 564
AjuI GAANNNNNNNTTGG 2 cut(s) 76, 108
Alw21I GWGCWC 1 cut(s) 421
Alw26I GTCTC 1 cut(s) 282
AlwI GGATC 3 cut(s) 29, 227, 685
AlwNI CAGNNNCTG 2 cut(s) 598, 1045
Ama87I CYCGRG 1 cut(s) 141
AoxI GGCC 4 cut(s) 48, 223, 561, 939
ApeKI GCWGC 7 cut(s) 316, 352, 491, 542, 859, 1039, 1117
AspLEI GCGC 7 cut(s) 7, 9, 104, 118, 259, 352, 952
AspS9I GGNCC 2 cut(s) 96, 940
AsuHPI GGTGA 3 cut(s) 530, 646, 827
AvaI CYCGRG 1 cut(s) 141
AvaII GGWCC 1 cut(s) 96
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BanI GGYRCC 2 cut(s) 411, 1019
BbsI GAAGAC 3 cut(s) 114, 341, 1074
Bbv12I GWGCWC 1 cut(s) 421
BbvI GCAGC 7 cut(s) 328, 364, 478, 529, 846, 1051, 1129
BccI CCATC 5 cut(s) 28, 40, 625, 728, 1010
BceAI ACGGC 6 cut(s) 35, 143, 196, 325, 576, 662
BcoDI GTCTC 1 cut(s) 282
BfaI CTAG 3 cut(s) 305, 623, 642
BfmI CTRYAG 2 cut(s) 219, 1046
BfrI CTTAAG 1 cut(s) 953
BfuAI ACCTGC 1 cut(s) 583
BglI GCCNNNNNGGC 2 cut(s) 56, 683
BisI GCNGC 8 cut(s) 184, 317, 353, 492, 543, 860, 1040, 1118
BlsI GCNGC 8 cut(s) 185, 318, 354, 493, 544, 861, 1041, 1119
Bme18I GGWCC 1 cut(s) 96
BmeRI GACNNNNNGTC 1 cut(s) 564
BmeT110I CYCGRG 1 cut(s) 141
BmgT120I GGNCC 2 cut(s) 96, 940
BmiI GGNNCC 3 cut(s) 413, 447, 1021
BmrI ACTGGG 1 cut(s) 572
BmsI GCATC 4 cut(s) 348, 511, 757, 1110
BmuI ACTGGG 1 cut(s) 572
BpiI GAAGAC 3 cut(s) 114, 341, 1074
BpmI CTGGAG 2 cut(s) 218, 443
BpuEI CTTGAG 1 cut(s) 400
BsaHI GRCGYC 2 cut(s) 174, 338
BsaJI CCNNGG 2 cut(s) 140, 1023
BsaXI ACNNNNNCTCC 2 cut(s) 191, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 421
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 2 cut(s) 564, 578
Bse3DI GCAATG 1 cut(s) 611
BseDI CCNNGG 2 cut(s) 140, 1023
BseGI GGATG 3 cut(s) 859, 1021, 1101
BseLI CCNNNNNNNGG 1 cut(s) 421
BseMI GCAATG 1 cut(s) 611
BseMII CTCAG 4 cut(s) 137, 149, 816, 962
BseNI ACTGG 2 cut(s) 564, 578
BsePI GCGCGC 1 cut(s) 5
BseXI GCAGC 7 cut(s) 328, 364, 478, 529, 846, 1051, 1129
BseYI CCCAGC 1 cut(s) 707
BsgI GTGCAG 1 cut(s) 1136
Bsh1236I CGCG 6 cut(s) 7, 9, 259, 350, 950, 1153
Bsh1285I CGRYCG 1 cut(s) 298
BshFI GGCC 4 cut(s) 50, 225, 563, 941
BshNI GGYRCC 2 cut(s) 411, 1019
BsiEI CGRYCG 1 cut(s) 298
BsiHKAI GWGCWC 1 cut(s) 421
BsiHKCI CYCGRG 1 cut(s) 141
BsiSI CCGG 1 cut(s) 301
BslFI GGGAC 2 cut(s) 158, 571
BslI CCNNNNNNNGG 1 cut(s) 421
BsmAI GTCTC 1 cut(s) 282
BsmFI GGGAC 2 cut(s) 158, 571
BsnI GGCC 4 cut(s) 50, 225, 563, 941
BsoBI CYCGRG 1 cut(s) 141
Bsp1286I GDGCHC 1 cut(s) 421
Bsp143I GATC 6 cut(s) 21, 232, 406, 690, 817, 901
BspACI CCGC 9 cut(s) 59, 156, 183, 282, 298, 494, 800, 1085, 1105
BspANI GGCC 4 cut(s) 50, 225, 563, 941
BspCNI CTCAG 4 cut(s) 136, 148, 817, 963
BspFNI CGCG 6 cut(s) 7, 9, 259, 350, 950, 1153
BspLI GGNNCC 3 cut(s) 413, 447, 1021
BspMAI CTGCAG 1 cut(s) 1050
BspMI ACCTGC 1 cut(s) 583
BspPI GGATC 3 cut(s) 29, 227, 685
BspT107I GGYRCC 2 cut(s) 411, 1019
BspTI CTTAAG 1 cut(s) 953
BsrDI GCAATG 1 cut(s) 611
BsrFI RCCGGY 1 cut(s) 300
BsrI ACTGG 2 cut(s) 564, 578
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 2 cut(s) 140, 1023
BssHII GCGCGC 1 cut(s) 5
BssMI GATC 6 cut(s) 21, 232, 406, 690, 817, 901
BssNI GRCGYC 2 cut(s) 174, 338
BssT1I CCWWGG 1 cut(s) 1023
Bst4CI ACNGT 2 cut(s) 213, 416
Bst6I CTCTTC 1 cut(s) 196
BstACI GRCGYC 2 cut(s) 174, 338
BstAFI CTTAAG 1 cut(s) 953
BstAPI GCANNNNNTGC 3 cut(s) 358, 674, 1045
BstC8I GCNNGC 4 cut(s) 7, 120, 302, 772
BstDEI CTNAG 6 cut(s) 25, 123, 135, 663, 825, 971
BstF5I GGATG 3 cut(s) 859, 1021, 1101
BstFNI CGCG 6 cut(s) 7, 9, 259, 350, 950, 1153
BstHHI GCGC 7 cut(s) 7, 9, 104, 118, 259, 352, 952
BstKTI GATC 6 cut(s) 24, 235, 409, 693, 820, 904
BstMAI GTCTC 1 cut(s) 282
BstMBI GATC 6 cut(s) 21, 232, 406, 690, 817, 901
BstMCI CGRYCG 1 cut(s) 298
BstMWI GCNNNNNNNGC 9 cut(s) 56, 337, 358, 445, 665, 674, 683, 947, 1045
BstSFI CTRYAG 2 cut(s) 219, 1046
BstUI CGCG 6 cut(s) 7, 9, 259, 350, 950, 1153
BstV1I GCAGC 7 cut(s) 328, 364, 478, 529, 846, 1051, 1129
BstV2I GAAGAC 3 cut(s) 114, 341, 1074
BstX2I RGATCY 1 cut(s) 21
BstYI RGATCY 1 cut(s) 21
BsuRI GGCC 4 cut(s) 50, 225, 563, 941
BtgZI GCGATG 1 cut(s) 59
BtsCI GGATG 3 cut(s) 859, 1021, 1101
BtsI GCAGTG 1 cut(s) 1114
BtsIMutI CAGTG 2 cut(s) 218, 1114
BveI ACCTGC 1 cut(s) 583
Cac8I GCNNGC 4 cut(s) 7, 120, 302, 772
CaiI CAGNNNCTG 2 cut(s) 598, 1045
CfoI GCGC 7 cut(s) 7, 9, 104, 118, 259, 352, 952
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 2 cut(s) 96, 940
CseI GACGC 3 cut(s) 182, 346, 356
CviAII CATG 6 cut(s) 18, 322, 515, 605, 844, 1164
DdeI CTNAG 6 cut(s) 25, 123, 135, 663, 825, 971
DpnI GATC 6 cut(s) 23, 234, 408, 692, 819, 903
DpnII GATC 6 cut(s) 21, 232, 406, 690, 817, 901
DriI GACNNNNNGTC 1 cut(s) 564
EaeI YGGCCR 2 cut(s) 48, 561
Eam1104I CTCTTC 1 cut(s) 196
Eam1105I GACNNNNNGTC 1 cut(s) 564
EarI CTCTTC 1 cut(s) 196
EciI GGCGGA 1 cut(s) 74
Eco130I CCWWGG 1 cut(s) 1023
Eco32I GATATC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 96
Eco57I CTGAAG 2 cut(s) 353, 734
Eco88I CYCGRG 1 cut(s) 141
EcoO109I RGGNCCY 1 cut(s) 940
EcoRV GATATC 1 cut(s) 781
EcoT14I CCWWGG 1 cut(s) 1023
ErhI CCWWGG 1 cut(s) 1023
FaeI CATG 6 cut(s) 21, 325, 518, 608, 847, 1167
FaqI GGGAC 2 cut(s) 158, 571
FatI CATG 6 cut(s) 17, 321, 514, 604, 843, 1163
FauI CCCGC 1 cut(s) 289
FblI GTMKAC 1 cut(s) 1062
Fnu4HI GCNGC 8 cut(s) 184, 317, 353, 492, 543, 860, 1040, 1118
FokI GGATG 3 cut(s) 866, 1028, 1088
Fsp4HI GCNGC 8 cut(s) 184, 317, 353, 492, 543, 860, 1040, 1118
FspBI CTAG 3 cut(s) 305, 623, 642
GlaI GCGC 7 cut(s) 6, 8, 103, 117, 258, 351, 951
GluI GCNGC 8 cut(s) 184, 317, 353, 492, 543, 860, 1040, 1118
GsaI CCCAGC 1 cut(s) 711
GsuI CTGGAG 2 cut(s) 218, 443
HaeIII GGCC 4 cut(s) 50, 225, 563, 941
HapII CCGG 1 cut(s) 301
HgaI GACGC 3 cut(s) 182, 346, 356
HhaI GCGC 7 cut(s) 7, 9, 104, 118, 259, 352, 952
Hin1I GRCGYC 2 cut(s) 174, 338
Hin1II CATG 6 cut(s) 21, 325, 518, 608, 847, 1167
Hin6I GCGC 7 cut(s) 5, 7, 102, 116, 257, 350, 950
HinP1I GCGC 7 cut(s) 5, 7, 102, 116, 257, 350, 950
HindIII AAGCTT 1 cut(s) 476
HinfI GANTC 3 cut(s) 127, 133, 958
HpaII CCGG 1 cut(s) 301
HphI GGTGA 3 cut(s) 530, 646, 827
Hpy166II GTNNAC 1 cut(s) 1063
Hpy188I TCNGA 8 cut(s) 126, 132, 232, 346, 570, 588, 695, 785
Hpy188III TCNNGA 6 cut(s) 143, 197, 422, 599, 752, 886
Hpy8I GTNNAC 1 cut(s) 1063
Hpy99I CGWCG 4 cut(s) 164, 182, 346, 394
HpyAV CCTTC 3 cut(s) 758, 786, 931
HpyCH4III ACNGT 2 cut(s) 213, 416
HpyCH4V TGCA 7 cut(s) 361, 524, 770, 931, 967, 1048, 1117
HpyF10VI GCNNNNNNNGC 9 cut(s) 56, 337, 358, 445, 665, 674, 683, 947, 1045
HpyF3I CTNAG 6 cut(s) 25, 123, 135, 663, 825, 971
Hsp92I GRCGYC 2 cut(s) 174, 338
Hsp92II CATG 6 cut(s) 21, 325, 518, 608, 847, 1167
HspAI GCGC 7 cut(s) 5, 7, 102, 116, 257, 350, 950
KroI GCCGGC 1 cut(s) 300
KroNI GCCGGC 1 cut(s) 302
Kzo9I GATC 6 cut(s) 21, 232, 406, 690, 817, 901
LmnI GCTCC 2 cut(s) 61, 445
Lsp1109I GCAGC 7 cut(s) 328, 364, 478, 529, 846, 1051, 1129
LweI GCATC 4 cut(s) 348, 511, 757, 1110
MaeI CTAG 3 cut(s) 305, 623, 642
MaeIII GTNAC 3 cut(s) 207, 383, 1147
MalI GATC 6 cut(s) 23, 234, 408, 692, 819, 903
MboI GATC 6 cut(s) 21, 232, 406, 690, 817, 901
MfeI CAATTG 2 cut(s) 242, 833
MflI RGATCY 1 cut(s) 21
MhlI GDGCHC 1 cut(s) 421
MluCI AATT 3 cut(s) 242, 536, 833
MlyI GAGTC 2 cut(s) 121, 127
MmeI TCCRAC 4 cut(s) 324, 381, 993, 1119
MnlI CCTC 7 cut(s) 48, 106, 150, 193, 418, 966, 1029
MroNI GCCGGC 1 cut(s) 300
MseI TTAA 4 cut(s) 72, 510, 954, 996
MslI CAYNNNNRTG 1 cut(s) 519
MspA1I CMGCKG 1 cut(s) 355
MspCI CTTAAG 1 cut(s) 953
MspI CCGG 1 cut(s) 301
MunI CAATTG 2 cut(s) 242, 833
MvnI CGCG 6 cut(s) 7, 9, 259, 350, 950, 1153
MwoI GCNNNNNNNGC 9 cut(s) 56, 337, 358, 445, 665, 674, 683, 947, 1045
NaeI GCCGGC 1 cut(s) 302
NdeII GATC 6 cut(s) 21, 232, 406, 690, 817, 901
NgoMIV GCCGGC 1 cut(s) 300
NlaIII CATG 6 cut(s) 21, 325, 518, 608, 847, 1167
NlaIV GGNNCC 3 cut(s) 413, 447, 1021
PauI GCGCGC 1 cut(s) 5
PcsI WCGNNNNNNNCGW 1 cut(s) 395
PdiI GCCGGC 1 cut(s) 302
PfeI GAWTC 1 cut(s) 958
PflFI GACNNNGTC 1 cut(s) 340
PkrI GCNGC 8 cut(s) 185, 318, 354, 493, 544, 861, 1041, 1119
PleI GAGTC 2 cut(s) 121, 127
PpsI GAGTC 2 cut(s) 121, 127
PspFI CCCAGC 1 cut(s) 707
PspN4I GGNNCC 3 cut(s) 413, 447, 1021
PspPI GGNCC 2 cut(s) 96, 940
PsrI GAACNNNNNNTAC 1 cut(s) 1140
PstI CTGCAG 1 cut(s) 1050
PstNI CAGNNNCTG 2 cut(s) 598, 1045
PsuI RGATCY 1 cut(s) 21
PsyI GACNNNGTC 1 cut(s) 340
PteI GCGCGC 1 cut(s) 5
PvuII CAGCTG 1 cut(s) 355
RseI CAYNNNNRTG 1 cut(s) 519
SaqAI TTAA 4 cut(s) 72, 510, 954, 996
SatI GCNGC 8 cut(s) 184, 317, 353, 492, 543, 860, 1040, 1118
Sau3AI GATC 6 cut(s) 21, 232, 406, 690, 817, 901
Sau96I GGNCC 2 cut(s) 96, 940
SchI GAGTC 2 cut(s) 121, 127
SduI GDGCHC 1 cut(s) 421
SfaNI GCATC 4 cut(s) 348, 511, 757, 1110
SfcI CTRYAG 2 cut(s) 219, 1046
SinI GGWCC 1 cut(s) 96
SmiMI CAYNNNNRTG 1 cut(s) 519
SmlI CTYRAG 2 cut(s) 379, 953
SmoI CTYRAG 2 cut(s) 379, 953
Sse9I AATT 3 cut(s) 242, 536, 833
SsiI CCGC 9 cut(s) 59, 156, 183, 282, 298, 494, 800, 1085, 1105
SspI AATATT 1 cut(s) 70
SspMI CTAG 3 cut(s) 305, 623, 642
StyI CCWWGG 1 cut(s) 1023
TaaI ACNGT 2 cut(s) 213, 416
TaqI TCGA 1 cut(s) 267
TasI AATT 3 cut(s) 242, 536, 833
TauI GCSGC 1 cut(s) 186
TfiI GAWTC 1 cut(s) 958
Tru1I TTAA 4 cut(s) 72, 510, 954, 996
Tru9I TTAA 4 cut(s) 72, 510, 954, 996
TscAI CASTG 2 cut(s) 218, 1114
TseI GCWGC 7 cut(s) 316, 352, 491, 542, 859, 1039, 1117
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 2 cut(s) 218, 1114
Tth111I GACNNNGTC 1 cut(s) 340
Vha464I CTTAAG 1 cut(s) 953
VpaK11BI GGWCC 1 cut(s) 96
XmiI GTMKAC 1 cut(s) 1062
XspI CTAG 3 cut(s) 305, 623, 642
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.