pycom13g15240

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0014233
Physical Location & Seq
Reverse (-)
11098099 .. 11100528
2430 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1035 bp
ATGCTCGCGAAGGAATCGGGGAGTTCGAACTTCGATCTTCCCGAGGAAGTGTTGGAAGTACTGCCGCCGGATCCTTTCGAGCAGCTCGATGTGGCCCGCAAAATCACGTCCCTTGCGCTCTCGACACGTGTCTCGGCCCTGGAATCAGAGTCGTCCGCTTTGCGCGAGAGGATGGCCGAGAAGGACCGGCTCATTGCCGACCTCCAATCACAGGTGGAGTCCCTGGACGCCTCTCTCTCCGAAACCGCCGACAAGCTCGTTCTCGCCGACCAGGAGAAGGAGGGATTGGCGAAGGAGAAGGCCTTACTCGCCAACACTGTGAGGAAGCTGAACAGAGATGTCTCGAAGCTGGAGGTGTTCAGAAAGACCCTTATGCGATCACTTGCAGAGGATGAAGAAAATCCTAGTGGAGCTTCAGAGGTTGTTGCTAAGCCTACTAATACTGTACAAGCCGAAGAGCACTTGTCTTCAAAACCACATGATGGAGATGGAGAAGGTGATGTCACATTTTCCACATTACCACCGTCGAGGTCATCTTCAGTCCAAAGCACGTTTTCTGAAAGAGGAAGTACGTTTACTGAGGATCACGACACAGATGCCTCAAGACCTCGCATAGCACACAGCCTCTTGCTAGCATCCCAAACTAGCACACCCCGGTTCACTCCCCCAGGTTCTCCTCCTATCTATTCTGCATCCACATCACCAACAAGAACATCGAAACCTGGGTCTCCAAAGCGACATTCCATGTCCTTCGCCACCTCAAGAGGCATGTTTGACAACAGATCATCTGTGCCCTCAAGCCATCACAGCTCTGAATCCGGAAGAACTAGGGTGGATGGGAAAGAATTTTTCCGCCAAGTCAGGAGTCGTTTGTCTTACGAGCAGTTTGGTGCATTCCTGGCAAATGTTAAGGAACTAAACGGCCACAAGCAAACCAAAGAGGAGACATTACAGAAGGCAGATGAGATATTTGGGCCAGATAACAAGGACCTATGTGCTATTTTTGAAGGATTAATCAGTCGCAATATCCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0008150 GO:0016020 GO:0022857 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

345

Amino Acids

37.76

Weight (kDa)

5.6

Isoelectric Point (pI)

52.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
At4g15545_C PF25972 277 - 342 1.5e-32 At4g15545-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014233)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G15545
fragaria_vesca FvH4_4g16760
malus_domestica MD13G1176600.v1.1 MD16G1178400.v1.1
prunus_persica Prupe.1G145800_v2.0.a1 Prupe.1G145800_v2.0.a1
pyrus_communis pycom13g15240 pycom16g14990
rosa_chinensis RchiOBHm_Chr4g0420331
rosa_laevigata RLG00000007772
rosa_roxburghii Rroxscaffold_5G00362980
rosa_samantha Rh4AG224500 Rh4BG227500 Rh4CG239000 Rh4DG223000
rosa_wichuraiana Rw0G005760 Rw4G019380

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 482
AccII CGCG 2 cut(s) 8, 165
AccIII TCCGGA 1 cut(s) 818
AciI CCGC 5 cut(s) 65, 97, 156, 246, 853
AclWI GGATC 3 cut(s) 65, 78, 591
AcoI YGGCCR 2 cut(s) 174, 922
AcsI RAATTY 1 cut(s) 845
AcuI CTGAAG 2 cut(s) 399, 522
AcvI CACGTG 1 cut(s) 128
AcyI GRCGYC 1 cut(s) 228
AfaI GTAC 3 cut(s) 60, 447, 571
AfiI CCNNNNNNNGG 3 cut(s) 211, 277, 482
AflIII ACRYGT 2 cut(s) 125, 127
AgsI TTSAA 2 cut(s) 471, 1007
AjiI CACGTC 1 cut(s) 108
AjnI CCWGG 6 cut(s) 138, 222, 270, 667, 721, 897
AjuI GAANNNNNNNTTGG 4 cut(s) 269, 301, 724, 756
AluBI AGCT 6 cut(s) 85, 256, 328, 349, 413, 810
AluI AGCT 6 cut(s) 85, 256, 328, 349, 413, 810
Alw21I GWGCWC 1 cut(s) 462
Alw26I GTCTC 4 cut(s) 136, 346, 732, 938
AlwI GGATC 3 cut(s) 65, 78, 591
Ama87I CYCGRG 1 cut(s) 41
Aor13HI TCCGGA 1 cut(s) 818
AoxI GGCC 6 cut(s) 93, 135, 174, 300, 922, 974
ApeKI GCWGC 1 cut(s) 82
ApoI RAATTY 1 cut(s) 845
ArsI GACNNNNNNTTYG 2 cut(s) 710, 742
AseI ATTAAT 1 cut(s) 1013
AspLEI GCGC 2 cut(s) 118, 165
AspS9I GGNCC 5 cut(s) 94, 136, 184, 974, 988
AsuC2I CCSGG 1 cut(s) 655
AsuHPI GGTGA 2 cut(s) 509, 693
AsuII TTCGAA 1 cut(s) 26
AsuNHI GCTAGC 1 cut(s) 631
AvaI CYCGRG 1 cut(s) 41
AvaII GGWCC 2 cut(s) 184, 988
BaeGI GKGCMC 1 cut(s) 795
BamHI GGATCC 1 cut(s) 70
BarI GAAGNNNNNNTAC 2 cut(s) 559, 591
BbrPI CACGTG 1 cut(s) 128
BbsI GAAGAC 1 cut(s) 459
Bbv12I GWGCWC 1 cut(s) 462
BbvI GCAGC 1 cut(s) 94
BccI CCATC 5 cut(s) 166, 476, 482, 810, 830
BceAI ACGGC 1 cut(s) 937
BcgI CGANNNNNNTGC 2 cut(s) 578, 612
BciT130I CCWGG 6 cut(s) 140, 224, 272, 669, 723, 899
BcnI CCSGG 1 cut(s) 655
BcoDI GTCTC 4 cut(s) 136, 346, 732, 938
BfaI CTAG 4 cut(s) 405, 632, 645, 828
BisI GCNGC 2 cut(s) 65, 83
BlpI GCTNAGC 1 cut(s) 429
BlsI GCNGC 2 cut(s) 66, 84
BmcAI AGTACT 1 cut(s) 60
Bme1390I CCNGG 7 cut(s) 140, 224, 272, 655, 669, 723, 899
Bme18I GGWCC 2 cut(s) 184, 988
BmeT110I CYCGRG 1 cut(s) 41
BmgBI CACGTC 1 cut(s) 108
BmgT120I GGNCC 5 cut(s) 94, 136, 184, 974, 988
BmiI GGNNCC 1 cut(s) 72
BmrFI CCNGG 7 cut(s) 140, 224, 272, 655, 669, 723, 899
BmsI GCATC 3 cut(s) 586, 644, 701
BmtI GCTAGC 1 cut(s) 635
BoxI GACNNNNGTC 1 cut(s) 128
BpiI GAAGAC 1 cut(s) 459
BpmI CTGGAG 1 cut(s) 371
Bpu1102I GCTNAGC 1 cut(s) 429
Bpu14I TTCGAA 1 cut(s) 26
BpuEI CTTGAG 3 cut(s) 586, 745, 781
BpuMI CCSGG 1 cut(s) 655
BsaAI YACGTR 1 cut(s) 128
BsaHI GRCGYC 1 cut(s) 228
BsaI GGTCTC 1 cut(s) 732
BsaJI CCNNGG 6 cut(s) 42, 138, 222, 653, 667, 722
BsaWI WCCGGW 1 cut(s) 818
Bsc4I CCNNNNNNNGG 3 cut(s) 211, 277, 482
Bse118I RCCGGY 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 192
BseAI TCCGGA 1 cut(s) 818
BseBI CCWGG 6 cut(s) 140, 224, 272, 669, 723, 899
BseDI CCNNGG 6 cut(s) 42, 138, 222, 653, 667, 722
BseGI GGATG 5 cut(s) 177, 397, 635, 692, 841
BseLI CCNNNNNNNGG 3 cut(s) 211, 277, 482
BseMI GCAATG 1 cut(s) 192
BseMII CTCAG 1 cut(s) 570
BseRI GAGGAG 2 cut(s) 666, 956
BseSI GKGCMC 1 cut(s) 795
BseXI GCAGC 1 cut(s) 94
Bsh1236I CGCG 2 cut(s) 8, 165
BshFI GGCC 6 cut(s) 95, 137, 176, 302, 924, 976
BsiHKAI GWGCWC 1 cut(s) 462
BsiHKCI CYCGRG 1 cut(s) 41
BsiSI CCGG 4 cut(s) 68, 187, 655, 819
BslFI GGGAC 2 cut(s) 94, 205
BslI CCNNNNNNNGG 3 cut(s) 211, 277, 482
BsmAI GTCTC 4 cut(s) 136, 346, 732, 938
BsmFI GGGAC 2 cut(s) 94, 205
BsmI GAATGC 1 cut(s) 893
BsnI GGCC 6 cut(s) 95, 137, 176, 302, 924, 976
Bso31I GGTCTC 1 cut(s) 732
BsoBI CYCGRG 1 cut(s) 41
Bsp119I TTCGAA 1 cut(s) 26
Bsp1286I GDGCHC 2 cut(s) 462, 795
Bsp13I TCCGGA 1 cut(s) 818
Bsp1407I TGTACA 1 cut(s) 445
Bsp143I GATC 5 cut(s) 34, 70, 377, 583, 782
Bsp1720I GCTNAGC 1 cut(s) 429
Bsp68I TCGCGA 1 cut(s) 8
BspACI CCGC 5 cut(s) 65, 97, 156, 246, 853
BspANI GGCC 6 cut(s) 95, 137, 176, 302, 924, 976
BspCNI CTCAG 1 cut(s) 571
BspEI TCCGGA 1 cut(s) 818
BspFNI CGCG 2 cut(s) 8, 165
BspLI GGNNCC 1 cut(s) 72
BspOI GCTAGC 1 cut(s) 635
BspPI GGATC 3 cut(s) 65, 78, 591
BspQI GCTCTTC 1 cut(s) 450
BspT104I TTCGAA 1 cut(s) 26
BspTNI GGTCTC 1 cut(s) 732
BsrDI GCAATG 1 cut(s) 192
BsrFI RCCGGY 1 cut(s) 186
BsrGI TGTACA 1 cut(s) 445
BssAI RCCGGY 1 cut(s) 186
BssECI CCNNGG 6 cut(s) 42, 138, 222, 653, 667, 722
BssMI GATC 5 cut(s) 34, 70, 377, 583, 782
BssNI GRCGYC 1 cut(s) 228
Bst2UI CCWGG 6 cut(s) 140, 224, 272, 669, 723, 899
Bst4CI ACNGT 3 cut(s) 319, 445, 525
Bst6I CTCTTC 1 cut(s) 450
BstACI GRCGYC 1 cut(s) 228
BstAUI TGTACA 1 cut(s) 445
BstBAI YACGTR 1 cut(s) 128
BstBI TTCGAA 1 cut(s) 26
BstC8I GCNNGC 3 cut(s) 6, 97, 633
BstDEI CTNAG 2 cut(s) 429, 579
BstF5I GGATG 5 cut(s) 177, 397, 635, 692, 841
BstFNI CGCG 2 cut(s) 8, 165
BstHHI GCGC 2 cut(s) 118, 165
BstKTI GATC 5 cut(s) 37, 73, 380, 586, 785
BstMAI GTCTC 4 cut(s) 136, 346, 732, 938
BstMBI GATC 5 cut(s) 34, 70, 377, 583, 782
BstMWI GCNNNNNNNGC 3 cut(s) 308, 807, 899
BstNI CCWGG 6 cut(s) 140, 224, 272, 669, 723, 899
BstNSI RCATGY 1 cut(s) 772
BstPAI GACNNNNGTC 1 cut(s) 128
BstSCI CCNGG 7 cut(s) 138, 222, 270, 653, 667, 721, 897
BstSLI GKGCMC 1 cut(s) 795
BstUI CGCG 2 cut(s) 8, 165
BstV1I GCAGC 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 459
BstX2I RGATCY 1 cut(s) 70
BstYI RGATCY 1 cut(s) 70
BsuRI GGCC 6 cut(s) 95, 137, 176, 302, 924, 976
BtrI CACGTC 1 cut(s) 108
BtsCI GGATG 5 cut(s) 177, 397, 635, 692, 841
BtsIMutI CAGTG 1 cut(s) 315
BtuMI TCGCGA 1 cut(s) 8
Cac8I GCNNGC 3 cut(s) 6, 97, 633
CfoI GCGC 2 cut(s) 118, 165
Cfr10I RCCGGY 1 cut(s) 186
Cfr13I GGNCC 5 cut(s) 94, 136, 184, 974, 988
CseI GACGC 1 cut(s) 236
Csp6I GTAC 3 cut(s) 59, 446, 570
CviAII CATG 3 cut(s) 479, 745, 769
CviQI GTAC 3 cut(s) 59, 446, 570
DdeI CTNAG 2 cut(s) 429, 579
DpnI GATC 5 cut(s) 36, 72, 379, 585, 784
DpnII GATC 5 cut(s) 34, 70, 377, 583, 782
EaeI YGGCCR 2 cut(s) 174, 922
Eam1104I CTCTTC 1 cut(s) 450
EarI CTCTTC 1 cut(s) 450
EciI GGCGGA 1 cut(s) 842
Eco147I AGGCCT 1 cut(s) 302
Eco31I GGTCTC 1 cut(s) 732
Eco47I GGWCC 2 cut(s) 184, 988
Eco57I CTGAAG 2 cut(s) 399, 522
Eco72I CACGTG 1 cut(s) 128
Eco88I CYCGRG 1 cut(s) 41
EcoO109I RGGNCCY 1 cut(s) 988
EcoRII CCWGG 6 cut(s) 138, 222, 270, 667, 721, 897
FaeI CATG 3 cut(s) 482, 748, 772
FaiI YATR 6 cut(s) 374, 480, 614, 746, 770, 994
FaqI GGGAC 2 cut(s) 94, 205
FatI CATG 3 cut(s) 478, 744, 768
FauI CCCGC 1 cut(s) 104
Fnu4HI GCNGC 2 cut(s) 65, 83
FokI GGATG 5 cut(s) 184, 404, 622, 679, 848
Fsp4HI GCNGC 2 cut(s) 65, 83
FspBI CTAG 4 cut(s) 405, 632, 645, 828
GlaI GCGC 2 cut(s) 117, 164
GluI GCNGC 2 cut(s) 65, 83
GsuI CTGGAG 1 cut(s) 371
HaeIII GGCC 6 cut(s) 95, 137, 176, 302, 924, 976
HapII CCGG 4 cut(s) 68, 187, 655, 819
HgaI GACGC 1 cut(s) 236
HhaI GCGC 2 cut(s) 118, 165
Hin1I GRCGYC 1 cut(s) 228
Hin1II CATG 3 cut(s) 482, 748, 772
Hin6I GCGC 2 cut(s) 116, 163
HinP1I GCGC 2 cut(s) 116, 163
HinfI GANTC 6 cut(s) 14, 143, 149, 218, 815, 865
HpaII CCGG 4 cut(s) 68, 187, 655, 819
HphI GGTGA 2 cut(s) 509, 693
Hpy166II GTNNAC 2 cut(s) 576, 660
Hpy188I TCNGA 6 cut(s) 148, 241, 362, 418, 559, 814
Hpy188III TCNNGA 9 cut(s) 7, 41, 121, 343, 587, 603, 762, 819, 862
Hpy8I GTNNAC 2 cut(s) 576, 660
Hpy99I CGWCG 1 cut(s) 529
HpyAV CCTTC 9 cut(s) 4, 175, 271, 286, 292, 488, 760, 949, 1001
HpyCH4III ACNGT 3 cut(s) 319, 445, 525
HpyCH4IV ACGT 4 cut(s) 107, 127, 551, 572
HpyCH4V TGCA 3 cut(s) 386, 692, 893
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 807, 899
HpyF3I CTNAG 2 cut(s) 429, 579
HpySE526I ACGT 4 cut(s) 107, 127, 551, 572
Hsp92I GRCGYC 1 cut(s) 228
Hsp92II CATG 3 cut(s) 482, 748, 772
HspAI GCGC 2 cut(s) 116, 163
Kpn2I TCCGGA 1 cut(s) 818
Kzo9I GATC 5 cut(s) 34, 70, 377, 583, 782
LguI GCTCTTC 1 cut(s) 450
LmnI GCTCC 1 cut(s) 410
Lsp1109I GCAGC 1 cut(s) 94
LweI GCATC 3 cut(s) 586, 644, 701
MaeI CTAG 4 cut(s) 405, 632, 645, 828
MaeII ACGT 4 cut(s) 107, 127, 551, 572
MaeIII GTNAC 1 cut(s) 502
MalI GATC 5 cut(s) 36, 72, 379, 585, 784
MboI GATC 5 cut(s) 34, 70, 377, 583, 782
MboII GAAGA 6 cut(s) 29, 407, 459, 467, 528, 834
MflI RGATCY 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 462, 795
MluCI AATT 1 cut(s) 845
MlyI GAGTC 3 cut(s) 158, 227, 874
MmeI TCCRAC 1 cut(s) 33
MroI TCCGGA 1 cut(s) 818
MseI TTAA 3 cut(s) 909, 1013, 1033
MspI CCGG 4 cut(s) 68, 187, 655, 819
MspR9I CCNGG 7 cut(s) 140, 224, 272, 655, 669, 723, 899
Mva1269I GAATGC 1 cut(s) 893
MvaI CCWGG 6 cut(s) 140, 224, 272, 669, 723, 899
MvnI CGCG 2 cut(s) 8, 165
MwoI GCNNNNNNNGC 3 cut(s) 308, 807, 899
NciI CCSGG 1 cut(s) 655
NdeII GATC 5 cut(s) 34, 70, 377, 583, 782
NheI GCTAGC 1 cut(s) 631
NlaIII CATG 3 cut(s) 482, 748, 772
NlaIV GGNNCC 1 cut(s) 72
NmeAIII GCCGAG 2 cut(s) 113, 202
NmuCI GTSAC 1 cut(s) 502
NruI TCGCGA 1 cut(s) 8
NspI RCATGY 1 cut(s) 772
NspV TTCGAA 1 cut(s) 26
PceI AGGCCT 1 cut(s) 302
PciSI GCTCTTC 1 cut(s) 450
PcsI WCGNNNNNNNCGW 4 cut(s) 23, 39, 84, 264
PctI GAATGC 1 cut(s) 893
PfeI GAWTC 3 cut(s) 14, 143, 815
PflMI CCANNNNNTGG 1 cut(s) 482
PkrI GCNGC 2 cut(s) 66, 84
PleI GAGTC 3 cut(s) 157, 226, 873
PmaCI CACGTG 1 cut(s) 128
PmlI CACGTG 1 cut(s) 128
PpsI GAGTC 3 cut(s) 157, 226, 873
Ppu21I YACGTR 1 cut(s) 128
PpuMI RGGWCCY 1 cut(s) 988
PshAI GACNNNNGTC 1 cut(s) 128
PshBI ATTAAT 1 cut(s) 1013
Psp5II RGGWCCY 1 cut(s) 988
Psp6I CCWGG 6 cut(s) 138, 222, 270, 667, 721, 897
PspCI CACGTG 1 cut(s) 128
PspGI CCWGG 6 cut(s) 138, 222, 270, 667, 721, 897
PspN4I GGNNCC 1 cut(s) 72
PspPI GGNCC 5 cut(s) 94, 136, 184, 974, 988
PspPPI RGGWCCY 1 cut(s) 988
PsuI RGATCY 1 cut(s) 70
RruI TCGCGA 1 cut(s) 8
RsaI GTAC 3 cut(s) 60, 447, 571
RsaNI GTAC 3 cut(s) 59, 446, 570
SapI GCTCTTC 1 cut(s) 450
SaqAI TTAA 3 cut(s) 909, 1013, 1033
SatI GCNGC 2 cut(s) 65, 83
Sau3AI GATC 5 cut(s) 34, 70, 377, 583, 782
Sau96I GGNCC 5 cut(s) 94, 136, 184, 974, 988
ScaI AGTACT 1 cut(s) 60
SchI GAGTC 3 cut(s) 158, 227, 874
ScrFI CCNGG 7 cut(s) 140, 224, 272, 655, 669, 723, 899
SduI GDGCHC 2 cut(s) 462, 795
SfaNI GCATC 3 cut(s) 586, 644, 701
SfuI TTCGAA 1 cut(s) 26
SinI GGWCC 2 cut(s) 184, 988
SmlI CTYRAG 3 cut(s) 601, 760, 796
SmoI CTYRAG 3 cut(s) 601, 760, 796
Sse9I AATT 1 cut(s) 845
SseBI AGGCCT 1 cut(s) 302
SsiI CCGC 5 cut(s) 65, 97, 156, 246, 853
SspMI CTAG 4 cut(s) 405, 632, 645, 828
StuI AGGCCT 1 cut(s) 302
StyD4I CCNGG 7 cut(s) 138, 222, 270, 653, 667, 721, 897
TaaI ACNGT 3 cut(s) 319, 445, 525
TaiI ACGT 4 cut(s) 110, 130, 554, 575
TaqI TCGA 8 cut(s) 26, 33, 78, 87, 122, 344, 527, 716
TasI AATT 1 cut(s) 845
TatI WGTACW 2 cut(s) 58, 445
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 3 cut(s) 14, 143, 815
Tru1I TTAA 3 cut(s) 909, 1013, 1033
Tru9I TTAA 3 cut(s) 909, 1013, 1033
TscAI CASTG 1 cut(s) 322
TseFI GTSAC 1 cut(s) 502
TseI GCWGC 1 cut(s) 82
Tsp45I GTSAC 1 cut(s) 502
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 1 cut(s) 322
Van91I CCANNNNNTGG 1 cut(s) 482
VpaK11BI GGWCC 2 cut(s) 184, 988
VspI ATTAAT 1 cut(s) 1013
XapI RAATTY 1 cut(s) 845
XceI RCATGY 1 cut(s) 772
XspI CTAG 4 cut(s) 405, 632, 645, 828
ZrmI AGTACT 1 cut(s) 60
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.