Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0006118

Physical Location & Seq

Genomic Coordinates Forward (+)

12904032 .. 12905875

Gene Structure 1844 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17160.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1377 bp

ATGAAAGAAAGAGTTAGCTCTTTGGAAGGTGAAGTTGGAGGACTGGTCGGCCAGTTGTCTGCATACGTTCCTGCCGTAGCCTCATTGAGAGAGAATGTAGCATCTCTTCAGCACAATGCCGTACTTAGATCGAAGCTTCTTGTAGCAAGAAATCAACAAGATAAGGATGTGAACCCGCCAAATCATCCATATGAAAAGAACTGTCAAGATTCCATAGAAGATCAAAGCCCATTGGTACCCGACGGAATTTCAGAATTGGCAGAAGTGCAAACTATGATAAAAGAAGTTGAAAAGACGTTTGTGGAAGAGACGGAAAGGCTTGTGATGGAAGCCTTTGAAAAGGCAATGGTGGAAGAAATTGAAAGCCTTTCAACTCAGCAAAGTACAAAAACCAGCAACTCGTCTGTGGAGATTGAAGAGTTACAATCAAAAGGTACCTTACTTAAAGAAAAAGGCAGTAAATGTGAAGAGGTGAAACTTGGGAAGGAGTTCACTGGTGAAAATCGCAAGTTGCAGAAGACAAAATCTGCTAATGGGACTTTGATGAAAGACATTCCGCTTGATCATGTTTCTGATTTATCATCGTATGGAAGAAGCTGGAGAGGTACTGGTGGGGCTGATGATCAGATGCTTGAGTTATGGGAGACTGCCGAACAATACTGTCACCAGGATCCGGTTGCCAGTGAGAAAGAAAATCAGGCATCTGCACGCATGGAAGATGTTACCCCCAGCCATCGGTTTACAGATTCTGAGCAGATGATTCAGAATTTTTCTTCAGAAGTTGAGGCTGAGAAGGAGTGGGGAATTGAGAAGCTGGAAGCGTCCCTTCGAAGGCCACGTCACGAAGGCAAGAAGGAAAAAATCTTGGAGAGACTGACCTCTGATGCCCAGAAGCTGACGAGTCTGCAGACAATTGCTCGGGATTTGGATAAGAAGATGGAGACAAGCAAGAAGGGCAAAAGGGCCAACGGCATTGAATATGAAACAGTCAAAAGACACTTACTTGAAGTTGAGTCTGCTGTTGTGCAGCTAGTGGAAACTAATGATCAACTGAAAAAGAAGATTGAGGAATCTCCGTCTTTGGACGAGCAGACTTCCATAGAGTTGGAGGAGGCTGGAAATGTCCGCAGAGAGAGAGTAGTCGAAGAGGCAAGTAAAGGGTCAGAGAAGATCGGAAGGCTGCAGTTTGAGTTGCAGAACATTCACTACATTTTGCTCAAACTGGAGGATGAGAATAAAAAGAAGGGGAGGCACGGATTTTACGTGAGCAGAACAGGCGTTCTCCTGAGGGATTTTATTTACAGCGGCAGAAGCAGCGAGAGGCGCAGGAAGGGTTGTGTGTGTGGCTGCATGAGACCCTCCACCAATGGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005911 GO:0008092 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0051015 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

459

Amino Acids

51.76

Weight (kDa)

5.48

Isoelectric Point (pI)

55.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22790 AT3G22790 AT3G22790 AT4G14760 AT4G14760 AT4G14760 AT4G14760
fragaria_vesca	FvH4_4g00822 FvH4_4g00822
malus_domestica	MD13G1197900.v1.1 MD16G1197900.v1.1
prunus_persica	Prupe.1G019400_v2.0.a1
pyrus_communis	pycom13g17150 pycom13g17160 pycom16g16670 pycom16g16680
rosa_chinensis	RchiOBHm_Chr4g0387381
rosa_laevigata	RLG00000010125
rosa_multiflora	Rmu_sc0011657.1_g000001 Rmu_sc0011657.1_g000002
rosa_roxburghii	Rroxscaffold_5G00334110
rosa_rugosa	Rorug03G0309200
rosa_samantha	Rh4AG015900 Rh4BG010700 Rh4CG016800 Rh4DG011900
rosa_wichuraiana	Rw4G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	235, 434
AccB1I	GGYRCC	2 cut(s)	235, 434
AciI	CCGC	4 cut(s)	176, 557, 1126, 1305
AclWI	GGATC	2 cut(s)	665, 678
AcoI	YGGCCR	1 cut(s)	49
AcsI	RAATTY	2 cut(s)	246, 766
AcuI	CTGAAG	2 cut(s)	92, 759
AfaI	GTAC	5 cut(s)	123, 237, 385, 436, 607
AfiI	CCNNNNNNNGG	3 cut(s)	673, 735, 831
AgsI	TTSAA	7 cut(s)	290, 338, 362, 372, 416, 977, 1007
AjiI	CACGTC	1 cut(s)	839
AjnI	CCWGG	1 cut(s)	666
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	6 cut(s)	18, 136, 597, 814, 895, 1030
AluI	AGCT	6 cut(s)	18, 136, 597, 814, 895, 1030
Alw26I	GTCTC	5 cut(s)	302, 638, 865, 935, 1348
AlwI	GGATC	2 cut(s)	665, 678
AlwNI	CAGNNNCTG	2 cut(s)	749, 895
Ama87I	CYCGRG	1 cut(s)	918
AoxI	GGCC	3 cut(s)	49, 833, 963
ApeKI	GCWGC	4 cut(s)	1027, 1180, 1314, 1347
ApoI	RAATTY	2 cut(s)	246, 766
ArsI	GACNNNNNNTTYG	2 cut(s)	823, 855
Asp700I	GAANNNNTTC	1 cut(s)	488
Asp718I	GGTACC	2 cut(s)	235, 434
AspLEI	GCGC	1 cut(s)	1326
AspS9I	GGNCC	1 cut(s)	963
AsuHPI	GGTGA	4 cut(s)	41, 484, 509, 656
AsuII	TTCGAA	1 cut(s)	829
AvaI	CYCGRG	1 cut(s)	918
AxyI	CCTNAGG	1 cut(s)	1286
BamHI	GGATCC	1 cut(s)	670
BanI	GGYRCC	2 cut(s)	235, 434
BarI	GAAGNNNNNNTAC	2 cut(s)	90, 122
BbsI	GAAGAC	1 cut(s)	524
BbvI	GCAGC	4 cut(s)	1039, 1167, 1326, 1334
BccI	CCATC	3 cut(s)	319, 741, 931
BceAI	ACGGC	3 cut(s)	59, 104, 985
BciT130I	CCWGG	1 cut(s)	668
BclI	TGATCA	3 cut(s)	562, 622, 1045
BcoDI	GTCTC	5 cut(s)	302, 638, 865, 935, 1348
BfaI	CTAG	1 cut(s)	1031
BfmI	CTRYAG	2 cut(s)	905, 1181
BisI	GCNGC	5 cut(s)	1028, 1181, 1306, 1315, 1348
BlsI	GCNGC	5 cut(s)	1029, 1182, 1307, 1316, 1349
Bme1390I	CCNGG	1 cut(s)	668
BmeT110I	CYCGRG	1 cut(s)	918
BmgBI	CACGTC	1 cut(s)	839
BmgT120I	GGNCC	1 cut(s)	963
BmiI	GGNNCC	3 cut(s)	237, 436, 672
BmrFI	CCNGG	1 cut(s)	668
BmsI	GCATC	4 cut(s)	110, 618, 710, 874
BpiI	GAAGAC	1 cut(s)	524
BpmI	CTGGAG	2 cut(s)	619, 1244
Bpu14I	TTCGAA	1 cut(s)	829
BpuEI	CTTGAG	1 cut(s)	653
BsaAI	YACGTR	1 cut(s)	1264
BsaI	GGTCTC	1 cut(s)	1348
BsaWI	WCCGGW	1 cut(s)	673
BsaXI	ACNNNNNCTCC	2 cut(s)	30, 60
Bsc4I	CCNNNNNNNGG	3 cut(s)	673, 735, 831
Bse1I	ACTGG	6 cut(s)	48, 52, 499, 613, 681, 1227
Bse21I	CCTNAGG	1 cut(s)	1286
Bse3DI	GCAATG	1 cut(s)	351
BseBI	CCWGG	1 cut(s)	668
BseGI	GGATG	3 cut(s)	172, 184, 1234
BseLI	CCNNNNNNNGG	3 cut(s)	673, 735, 831
BseMI	GCAATG	1 cut(s)	351
BseMII	CTCAG	4 cut(s)	389, 741, 780, 1277
BseNI	ACTGG	6 cut(s)	48, 52, 499, 613, 681, 1227
BseRI	GAGGAG	1 cut(s)	1124
BseXI	GCAGC	4 cut(s)	1039, 1167, 1326, 1334
BseYI	CCCAGC	1 cut(s)	728
BsgI	GTGCAG	2 cut(s)	690, 1046
BshFI	GGCC	3 cut(s)	51, 835, 965
BshNI	GGYRCC	2 cut(s)	235, 434
BsiHKCI	CYCGRG	1 cut(s)	918
BsiSI	CCGG	1 cut(s)	674
BslFI	GGGAC	2 cut(s)	550, 808
BslI	CCNNNNNNNGG	3 cut(s)	673, 735, 831
BsmAI	GTCTC	5 cut(s)	302, 638, 865, 935, 1348
BsmBI	CGTCTC	1 cut(s)	302
BsmFI	GGGAC	2 cut(s)	550, 808
BsnI	GGCC	3 cut(s)	51, 835, 965
Bso31I	GGTCTC	1 cut(s)	1348
BsoBI	CYCGRG	1 cut(s)	918
Bsp119I	TTCGAA	1 cut(s)	829
Bsp143I	GATC	7 cut(s)	128, 220, 562, 622, 670, 1045, 1170
BspACI	CCGC	4 cut(s)	176, 557, 1126, 1305
BspANI	GGCC	3 cut(s)	51, 835, 965
BspCNI	CTCAG	4 cut(s)	388, 742, 781, 1278
BspLI	GGNNCC	3 cut(s)	237, 436, 672
BspMAI	CTGCAG	2 cut(s)	909, 1185
BspPI	GGATC	2 cut(s)	665, 678
BspT104I	TTCGAA	1 cut(s)	829
BspT107I	GGYRCC	2 cut(s)	235, 434
BspTNI	GGTCTC	1 cut(s)	1348
BsrDI	GCAATG	1 cut(s)	351
BsrI	ACTGG	6 cut(s)	48, 52, 499, 613, 681, 1227
BssMI	GATC	7 cut(s)	128, 220, 562, 622, 670, 1045, 1170
Bst2UI	CCWGG	1 cut(s)	668
Bst4CI	ACNGT	3 cut(s)	203, 662, 988
Bst6I	CTCTTC	5 cut(s)	111, 300, 411, 462, 1140
BstBAI	YACGTR	1 cut(s)	1264
BstBI	TTCGAA	1 cut(s)	829
BstC8I	GCNNGC	1 cut(s)	709
BstDEI	CTNAG	5 cut(s)	125, 375, 750, 789, 1286
BstF5I	GGATG	3 cut(s)	172, 184, 1234
BstHHI	GCGC	1 cut(s)	1326
BstKTI	GATC	7 cut(s)	131, 223, 565, 625, 673, 1048, 1173
BstMAI	GTCTC	5 cut(s)	302, 638, 865, 935, 1348
BstMBI	GATC	7 cut(s)	128, 220, 562, 622, 670, 1045, 1170
BstMWI	GCNNNNNNNGC	5 cut(s)	954, 1275, 1311, 1314, 1323
BstNI	CCWGG	1 cut(s)	668
BstSCI	CCNGG	1 cut(s)	666
BstSFI	CTRYAG	2 cut(s)	905, 1181
BstV1I	GCAGC	4 cut(s)	1039, 1167, 1326, 1334
BstV2I	GAAGAC	1 cut(s)	524
BstX2I	RGATCY	1 cut(s)	670
BstXI	CCANNNNNNTGG	1 cut(s)	1105
BstYI	RGATCY	1 cut(s)	670
Bsu36I	CCTNAGG	1 cut(s)	1286
BsuRI	GGCC	3 cut(s)	51, 835, 965
BtrI	CACGTC	1 cut(s)	839
BtsCI	GGATG	3 cut(s)	172, 184, 1234
BtsIMutI	CAGTG	2 cut(s)	492, 688
Cac8I	GCNNGC	1 cut(s)	709
CaiI	CAGNNNCTG	2 cut(s)	749, 895
CfoI	GCGC	1 cut(s)	1326
Cfr13I	GGNCC	1 cut(s)	963
CseI	GACGC	1 cut(s)	810
Csp6I	GTAC	5 cut(s)	122, 236, 384, 435, 606
CviAII	CATG	3 cut(s)	566, 712, 1351
CviQI	GTAC	5 cut(s)	122, 236, 384, 435, 606
DdeI	CTNAG	5 cut(s)	125, 375, 750, 789, 1286
DpnI	GATC	7 cut(s)	130, 222, 564, 624, 672, 1047, 1172
DpnII	GATC	7 cut(s)	128, 220, 562, 622, 670, 1045, 1170
EaeI	YGGCCR	1 cut(s)	49
Eam1104I	CTCTTC	5 cut(s)	111, 300, 411, 462, 1140
EarI	CTCTTC	5 cut(s)	111, 300, 411, 462, 1140
Eco31I	GGTCTC	1 cut(s)	1348
Eco57I	CTGAAG	2 cut(s)	92, 759
Eco81I	CCTNAGG	1 cut(s)	1286
Eco88I	CYCGRG	1 cut(s)	918
EcoRII	CCWGG	1 cut(s)	666
Esp3I	CGTCTC	1 cut(s)	302
FaeI	CATG	3 cut(s)	569, 715, 1354
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FaqI	GGGAC	2 cut(s)	550, 808
FatI	CATG	3 cut(s)	565, 711, 1350
FauI	CCCGC	1 cut(s)	183
FauNDI	CATATG	1 cut(s)	190
FbaI	TGATCA	3 cut(s)	562, 622, 1045
Fnu4HI	GCNGC	5 cut(s)	1028, 1181, 1306, 1315, 1348
FokI	GGATG	3 cut(s)	171, 179, 1241
Fsp4HI	GCNGC	5 cut(s)	1028, 1181, 1306, 1315, 1348
FspBI	CTAG	1 cut(s)	1031
GlaI	GCGC	1 cut(s)	1325
GluI	GCNGC	5 cut(s)	1028, 1181, 1306, 1315, 1348
GsaI	CCCAGC	1 cut(s)	732
GsuI	CTGGAG	2 cut(s)	619, 1244
HaeIII	GGCC	3 cut(s)	51, 835, 965
HapII	CCGG	1 cut(s)	674
HgaI	GACGC	1 cut(s)	810
HhaI	GCGC	1 cut(s)	1326
Hin1II	CATG	3 cut(s)	569, 715, 1354
Hin6I	GCGC	1 cut(s)	1324
HinP1I	GCGC	1 cut(s)	1324
HindIII	AAGCTT	1 cut(s)	134
HinfI	GANTC	6 cut(s)	209, 746, 760, 901, 1013, 1070
HpaII	CCGG	1 cut(s)	674
HphI	GGTGA	4 cut(s)	41, 484, 509, 656
Hpy166II	GTNNAC	3 cut(s)	172, 492, 741
Hpy188I	TCNGA	9 cut(s)	253, 574, 627, 751, 765, 778, 883, 1165, 1175
Hpy188III	TCNNGA	4 cut(s)	206, 842, 920, 1285
Hpy8I	GTNNAC	3 cut(s)	172, 492, 741
Hpy99I	CGWCG	1 cut(s)	245
HpyCH4III	ACNGT	3 cut(s)	203, 662, 988
HpyCH4IV	ACGT	4 cut(s)	66, 296, 838, 1263
HpyCH4V	TGCA	9 cut(s)	62, 268, 514, 707, 907, 1027, 1183, 1195, 1350
HpyF10VI	GCNNNNNNNGC	5 cut(s)	954, 1275, 1311, 1314, 1323
HpyF3I	CTNAG	5 cut(s)	125, 375, 750, 789, 1286
HpySE526I	ACGT	4 cut(s)	66, 296, 838, 1263
Hsp92II	CATG	3 cut(s)	569, 715, 1354
HspAI	GCGC	1 cut(s)	1324
KpnI	GGTACC	2 cut(s)	239, 438
Ksp22I	TGATCA	3 cut(s)	562, 622, 1045
Kzo9I	GATC	7 cut(s)	128, 220, 562, 622, 670, 1045, 1170
Lsp1109I	GCAGC	4 cut(s)	1039, 1167, 1326, 1334
LweI	GCATC	4 cut(s)	110, 618, 710, 874
MaeI	CTAG	1 cut(s)	1031
MaeII	ACGT	4 cut(s)	66, 296, 838, 1263
MaeIII	GTNAC	4 cut(s)	420, 662, 721, 839
MalI	GATC	7 cut(s)	130, 222, 564, 624, 672, 1047, 1172
MboI	GATC	7 cut(s)	128, 220, 562, 622, 670, 1045, 1170
MfeI	CAATTG	1 cut(s)	912
MflI	RGATCY	1 cut(s)	670
MluCI	AATT	6 cut(s)	246, 254, 357, 766, 804, 912
MlyI	GAGTC	2 cut(s)	910, 1022
MmeI	TCCRAC	2 cut(s)	16, 1086
MroXI	GAANNNNTTC	1 cut(s)	488
MseI	TTAA	1 cut(s)	444
MslI	CAYNNNNRTG	1 cut(s)	189
MspA1I	CMGCKG	1 cut(s)	1305
MspI	CCGG	1 cut(s)	674
MspR9I	CCNGG	1 cut(s)	668
MunI	CAATTG	1 cut(s)	912
MvaI	CCWGG	1 cut(s)	668
MwoI	GCNNNNNNNGC	5 cut(s)	954, 1275, 1311, 1314, 1323
NdeI	CATATG	1 cut(s)	190
NdeII	GATC	7 cut(s)	128, 220, 562, 622, 670, 1045, 1170
NlaIII	CATG	3 cut(s)	569, 715, 1354
NlaIV	GGNNCC	3 cut(s)	237, 436, 672
NmuCI	GTSAC	2 cut(s)	662, 839
NspV	TTCGAA	1 cut(s)	829
PcsI	WCGNNNNNNNCGW	3 cut(s)	72, 835, 1260
PdmI	GAANNNNTTC	1 cut(s)	488
PfeI	GAWTC	4 cut(s)	209, 746, 760, 1070
PkrI	GCNGC	5 cut(s)	1029, 1182, 1307, 1316, 1349
PleI	GAGTC	2 cut(s)	909, 1021
PpsI	GAGTC	2 cut(s)	909, 1021
Ppu21I	YACGTR	1 cut(s)	1264
Psp6I	CCWGG	1 cut(s)	666
PspFI	CCCAGC	1 cut(s)	728
PspGI	CCWGG	1 cut(s)	666
PspN4I	GGNNCC	3 cut(s)	237, 436, 672
PspPI	GGNCC	1 cut(s)	963
PsrI	GAACNNNNNNTAC	2 cut(s)	1190, 1222
PstI	CTGCAG	2 cut(s)	909, 1185
PstNI	CAGNNNCTG	2 cut(s)	749, 895
PsuI	RGATCY	1 cut(s)	670
RsaI	GTAC	5 cut(s)	123, 237, 385, 436, 607
RsaNI	GTAC	5 cut(s)	122, 236, 384, 435, 606
RseI	CAYNNNNRTG	1 cut(s)	189
SaqAI	TTAA	1 cut(s)	444
SatI	GCNGC	5 cut(s)	1028, 1181, 1306, 1315, 1348
Sau3AI	GATC	7 cut(s)	128, 220, 562, 622, 670, 1045, 1170
Sau96I	GGNCC	1 cut(s)	963
SchI	GAGTC	2 cut(s)	910, 1022
ScrFI	CCNGG	1 cut(s)	668
SfaNI	GCATC	4 cut(s)	110, 618, 710, 874
SfcI	CTRYAG	2 cut(s)	905, 1181
SfuI	TTCGAA	1 cut(s)	829
SmiMI	CAYNNNNRTG	1 cut(s)	189
SmlI	CTYRAG	1 cut(s)	632
SmoI	CTYRAG	1 cut(s)	632
Sse9I	AATT	6 cut(s)	246, 254, 357, 766, 804, 912
SsiI	CCGC	4 cut(s)	176, 557, 1126, 1305
SspMI	CTAG	1 cut(s)	1031
StyD4I	CCNGG	1 cut(s)	666
TaaI	ACNGT	3 cut(s)	203, 662, 988
TaiI	ACGT	4 cut(s)	69, 299, 841, 1266
TaqI	TCGA	3 cut(s)	131, 829, 1143
TasI	AATT	6 cut(s)	246, 254, 357, 766, 804, 912
TatI	WGTACW	1 cut(s)	383
TauI	GCSGC	1 cut(s)	1308
TfiI	GAWTC	4 cut(s)	209, 746, 760, 1070
Tru1I	TTAA	1 cut(s)	444
Tru9I	TTAA	1 cut(s)	444
TscAI	CASTG	2 cut(s)	499, 688
TseFI	GTSAC	2 cut(s)	662, 839
TseI	GCWGC	4 cut(s)	1027, 1180, 1314, 1347
Tsp45I	GTSAC	2 cut(s)	662, 839
TspDTI	ATGAA	4 cut(s)	17, 207, 560, 996
TspGWI	ACGGA	4 cut(s)	258, 326, 1065, 1269
TspRI	CASTG	2 cut(s)	499, 688
XapI	RAATTY	2 cut(s)	246, 766
XmnI	GAANNNNTTC	1 cut(s)	488
XspI	CTAG	1 cut(s)	1031

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.