Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0011657.1

Orthogroup ID

OG0006118

Physical Location & Seq

Genomic Coordinates Forward (+)

11936 .. 12958

Gene Structure 1023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0011657.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggtggaagaaattgaaaggcttgcaacaaaggaaagggcagaggccttggtacagactgaagtaaaatcaacaggtaactcaaatcaagaaaatggtagcaaaggagaagaggtggaacctgtgaatgagtactcggatgataatctgaagttgagtaaacctgaaataaggcttttgacgaaagacattctgcttgatcatgtttcagattcttcattctatggaagaagcaggagaaagaatggtagggctgatgatcagatgctggagttgtgggaagcagccgagcagcattgcctccaggatccagcagccaatatcaggcaagaccaggcatccccaccaactgaagatgttaccccctaccctcggtttgcaaactcacggaggacgactcgaaagtctccttcagaagttcaggttgagaaggagttgggcattgacaagctggaggtgtcctacagtattcgacaaccaagtcatgatggcaagaaggaaaagatcttggagaggcttgcttctgatgctcagaaactgatgtgtctacaaacgtctgtgcaagacttgcataagaaggtggagactaacaagaagggtaagaagatcaacagctctgaatacgaaacggtgaaaagacagttgcacgaagttgaggatgcggttgtgcagctggtggatattaatgatcagttgaaaaagaatgttgaagagtttccatctttggatgagcagacttccatagagttggaggaggctggaaatgtcagcagagagggagtaaccgaacaagcatggaaaggatctgagaagattggaaggttgcagtttgagttgcagaacatccaatatgttttggtgaaatgggagggtgaaaagaaaaggaaagggaggcatggattttatgtgagtagaacaggtcttctcctgagggattttatttacagtggcagaagtagtagtgaaaggcgcaagaagggttgtttgtgtggttgtatgagaccatcaacgagaggagaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003779 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005886 GO:0005911 GO:0008092 GO:0009506 GO:0016020 GO:0030054 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044877 GO:0051015 GO:0055044 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KIP1

Protein Analysis

340

Amino Acids

38.85

Weight (kDa)

6.2

Isoelectric Point (pI)

56.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006118)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22790 AT3G22790 AT3G22790 AT4G14760 AT4G14760 AT4G14760 AT4G14760
fragaria_vesca	FvH4_4g00822 FvH4_4g00822
malus_domestica	MD13G1197900.v1.1 MD16G1197900.v1.1
prunus_persica	Prupe.1G019400_v2.0.a1
pyrus_communis	pycom13g17150 pycom13g17160 pycom16g16670 pycom16g16680
rosa_chinensis	RchiOBHm_Chr4g0387381
rosa_laevigata	RLG00000010125
rosa_multiflora	Rmu_sc0011657.1_g000001 Rmu_sc0011657.1_g000002
rosa_roxburghii	Rroxscaffold_5G00334110
rosa_rugosa	Rorug03G0309200
rosa_samantha	Rh4AG015900 Rh4BG010700 Rh4CG016800 Rh4DG011900
rosa_wichuraiana	Rw4G000980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	403, 480
AccI	GTMKAC	1 cut(s)	547
AciI	CCGC	1 cut(s)	662
AclWI	GGATC	3 cut(s)	302, 315, 811
AcuI	CTGAAG	4 cut(s)	81, 170, 372, 396
AfaI	GTAC	2 cut(s)	54, 134
AfiI	CCNNNNNNNGG	2 cut(s)	324, 372
AgsI	TTSAA	3 cut(s)	17, 697, 710
AjnI	CCWGG	2 cut(s)	303, 333
AluBI	AGCT	3 cut(s)	451, 615, 673
AluI	AGCT	3 cut(s)	451, 615, 673
Alw26I	GTCTC	3 cut(s)	411, 578, 994
AlwI	GGATC	3 cut(s)	302, 315, 811
AlwNI	CAGNNNCTG	2 cut(s)	268, 538
AoxI	GGCC	1 cut(s)	45
ApeKI	GCWGC	4 cut(s)	284, 292, 314, 670
AseI	ATTAAT	1 cut(s)	684
Asp700I	GAANNNNTTC	1 cut(s)	714
AspLEI	GCGC	1 cut(s)	972
AsuHPI	GGTGA	3 cut(s)	643, 871, 884
AxyI	CCTNAGG	1 cut(s)	929
BamHI	GGATCC	1 cut(s)	307
BbsI	GAAGAC	1 cut(s)	914
BbvI	GCAGC	4 cut(s)	296, 304, 326, 682
BccI	CCATC	3 cut(s)	482, 727, 1012
BciT130I	CCWGG	2 cut(s)	305, 335
BclI	TGATCA	3 cut(s)	199, 259, 688
BcoDI	GTCTC	3 cut(s)	411, 578, 994
BfmI	CTRYAG	1 cut(s)	463
BglII	AGATCT	1 cut(s)	504
BisI	GCNGC	4 cut(s)	285, 293, 315, 671
BlsI	GCNGC	4 cut(s)	286, 294, 316, 672
BmcAI	AGTACT	1 cut(s)	134
Bme1390I	CCNGG	2 cut(s)	305, 335
BmiI	GGNNCC	2 cut(s)	120, 309
BmrFI	CCNGG	2 cut(s)	305, 335
BmsI	GCATC	4 cut(s)	255, 347, 517, 649
BpiI	GAAGAC	1 cut(s)	914
BplI	GAGNNNNNCTC	2 cut(s)	382, 414
BpmI	CTGGAG	3 cut(s)	287, 290, 473
BsaBI	GATNNNNATC	1 cut(s)	144
BsaI	GGTCTC	1 cut(s)	994
BsaJI	CCNNGG	2 cut(s)	48, 371
BsaXI	ACNNNNNCTCC	2 cut(s)	99, 129
Bsc4I	CCNNNNNNNGG	2 cut(s)	324, 372
Bse21I	CCTNAGG	1 cut(s)	929
Bse3DI	GCAATG	1 cut(s)	295
Bse8I	GATNNNNATC	1 cut(s)	144
BseBI	CCWGG	2 cut(s)	305, 335
BseDI	CCNNGG	2 cut(s)	48, 371
BseGI	GGATG	5 cut(s)	145, 338, 664, 733, 843
BseJI	GATNNNNATC	1 cut(s)	144
BseLI	CCNNNNNNNGG	2 cut(s)	324, 372
BseMI	GCAATG	1 cut(s)	295
BseMII	CTCAG	3 cut(s)	545, 798, 920
BseRI	GAGGAG	1 cut(s)	767
BseXI	GCAGC	4 cut(s)	296, 304, 326, 682
BsgI	GTGCAG	1 cut(s)	689
BshFI	GGCC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	324, 372
BsmAI	GTCTC	3 cut(s)	411, 578, 994
BsnI	GGCC	1 cut(s)	47
Bso31I	GGTCTC	1 cut(s)	994
Bsp143I	GATC	7 cut(s)	199, 259, 307, 504, 606, 688, 803
BspACI	CCGC	1 cut(s)	662
BspANI	GGCC	1 cut(s)	47
BspCNI	CTCAG	3 cut(s)	544, 799, 921
BspHI	TCATGA	1 cut(s)	484
BspLI	GGNNCC	2 cut(s)	120, 309
BspPI	GGATC	3 cut(s)	302, 315, 811
BspTNI	GGTCTC	1 cut(s)	994
BsrDI	GCAATG	1 cut(s)	295
BssECI	CCNNGG	2 cut(s)	48, 371
BssMI	GATC	7 cut(s)	199, 259, 307, 504, 606, 688, 803
BssT1I	CCWWGG	1 cut(s)	48
Bst2UI	CCWGG	2 cut(s)	305, 335
Bst4CI	ACNGT	4 cut(s)	467, 631, 642, 947
Bst6I	CTCTTC	2 cut(s)	105, 705
BstAPI	GCANNNNNTGC	1 cut(s)	568
BstC8I	GCNNGC	2 cut(s)	24, 519
BstDEI	CTNAG	3 cut(s)	531, 807, 929
BstF5I	GGATG	5 cut(s)	145, 338, 664, 733, 843
BstHHI	GCGC	1 cut(s)	972
BstKTI	GATC	7 cut(s)	202, 262, 310, 507, 609, 691, 806
BstMAI	GTCTC	3 cut(s)	411, 578, 994
BstMBI	GATC	7 cut(s)	199, 259, 307, 504, 606, 688, 803
BstMWI	GCNNNNNNNGC	2 cut(s)	527, 568
BstNI	CCWGG	2 cut(s)	305, 335
BstSCI	CCNGG	2 cut(s)	303, 333
BstSFI	CTRYAG	1 cut(s)	463
BstV1I	GCAGC	4 cut(s)	296, 304, 326, 682
BstV2I	GAAGAC	1 cut(s)	914
BstX2I	RGATCY	3 cut(s)	307, 504, 803
BstXI	CCANNNNNNTGG	1 cut(s)	748
BstYI	RGATCY	3 cut(s)	307, 504, 803
Bsu36I	CCTNAGG	1 cut(s)	929
BsuRI	GGCC	1 cut(s)	47
BtsCI	GGATG	5 cut(s)	145, 338, 664, 733, 843
BtsIMutI	CAGTG	1 cut(s)	952
Cac8I	GCNNGC	2 cut(s)	24, 519
CaiI	CAGNNNCTG	2 cut(s)	268, 538
CciI	TCATGA	1 cut(s)	484
CfoI	GCGC	1 cut(s)	972
Csp6I	GTAC	2 cut(s)	53, 133
CviAII	CATG	4 cut(s)	203, 485, 795, 896
CviQI	GTAC	2 cut(s)	53, 133
DdeI	CTNAG	3 cut(s)	531, 807, 929
DpnI	GATC	7 cut(s)	201, 261, 309, 506, 608, 690, 805
DpnII	GATC	7 cut(s)	199, 259, 307, 504, 606, 688, 803
DrdI	GACNNNNNNGTC	2 cut(s)	403, 480
DseDI	GACNNNNNNGTC	2 cut(s)	403, 480
Eam1104I	CTCTTC	2 cut(s)	105, 705
EarI	CTCTTC	2 cut(s)	105, 705
Eco130I	CCWWGG	1 cut(s)	48
Eco147I	AGGCCT	1 cut(s)	47
Eco31I	GGTCTC	1 cut(s)	994
Eco57I	CTGAAG	4 cut(s)	81, 170, 372, 396
Eco81I	CCTNAGG	1 cut(s)	929
EcoRII	CCWGG	2 cut(s)	303, 333
EcoT14I	CCWWGG	1 cut(s)	48
ErhI	CCWWGG	1 cut(s)	48
FaeI	CATG	4 cut(s)	206, 488, 798, 899
FatI	CATG	4 cut(s)	202, 484, 794, 895
FbaI	TGATCA	3 cut(s)	199, 259, 688
FblI	GTMKAC	1 cut(s)	547
Fnu4HI	GCNGC	4 cut(s)	285, 293, 315, 671
FokI	GGATG	5 cut(s)	152, 325, 671, 740, 830
Fsp4HI	GCNGC	4 cut(s)	285, 293, 315, 671
GlaI	GCGC	1 cut(s)	971
GluI	GCNGC	4 cut(s)	285, 293, 315, 671
GsuI	CTGGAG	3 cut(s)	287, 290, 473
HaeIII	GGCC	1 cut(s)	47
HhaI	GCGC	1 cut(s)	972
Hin1II	CATG	4 cut(s)	206, 488, 798, 899
Hin6I	GCGC	1 cut(s)	970
HinP1I	GCGC	1 cut(s)	970
HinfI	GANTC	2 cut(s)	212, 397
HphI	GGTGA	3 cut(s)	643, 871, 884
Hpy166II	GTNNAC	2 cut(s)	161, 548
Hpy188I	TCNGA	9 cut(s)	139, 150, 211, 264, 415, 526, 534, 619, 808
Hpy188III	TCNNGA	3 cut(s)	89, 485, 928
Hpy8I	GTNNAC	2 cut(s)	161, 548
HpyAV	CCTTC	7 cut(s)	420, 424, 490, 571, 589, 813, 970
HpyCH4III	ACNGT	4 cut(s)	467, 631, 642, 947
HpyCH4IV	ACGT	1 cut(s)	554
HpyCH4V	TGCA	8 cut(s)	26, 380, 562, 571, 646, 670, 826, 838
HpyF10VI	GCNNNNNNNGC	2 cut(s)	527, 568
HpyF3I	CTNAG	3 cut(s)	531, 807, 929
HpySE526I	ACGT	1 cut(s)	554
Hsp92II	CATG	4 cut(s)	206, 488, 798, 899
HspAI	GCGC	1 cut(s)	970
Ksp22I	TGATCA	3 cut(s)	199, 259, 688
Kzo9I	GATC	7 cut(s)	199, 259, 307, 504, 606, 688, 803
Lsp1109I	GCAGC	4 cut(s)	296, 304, 326, 682
LweI	GCATC	4 cut(s)	255, 347, 517, 649
MaeII	ACGT	1 cut(s)	554
MaeIII	GTNAC	3 cut(s)	77, 358, 781
MalI	GATC	7 cut(s)	201, 261, 309, 506, 608, 690, 805
MboI	GATC	7 cut(s)	199, 259, 307, 504, 606, 688, 803
MboII	GAAGA	9 cut(s)	20, 122, 207, 240, 365, 616, 722, 823, 914
MflI	RGATCY	3 cut(s)	307, 504, 803
MluCI	AATT	1 cut(s)	12
MlyI	GAGTC	1 cut(s)	391
MmeI	TCCRAC	1 cut(s)	729
MroXI	GAANNNNTTC	1 cut(s)	714
MseI	TTAA	1 cut(s)	684
MspA1I	CMGCKG	1 cut(s)	673
MspR9I	CCNGG	2 cut(s)	305, 335
MvaI	CCWGG	2 cut(s)	305, 335
MwoI	GCNNNNNNNGC	2 cut(s)	527, 568
NdeII	GATC	7 cut(s)	199, 259, 307, 504, 606, 688, 803
NlaIII	CATG	4 cut(s)	206, 488, 798, 899
NlaIV	GGNNCC	2 cut(s)	120, 309
NmeAIII	GCCGAG	1 cut(s)	313
PagI	TCATGA	1 cut(s)	484
PceI	AGGCCT	1 cut(s)	47
PdmI	GAANNNNTTC	1 cut(s)	714
PfeI	GAWTC	1 cut(s)	212
PfoI	TCCNGGA	1 cut(s)	303
PkrI	GCNGC	4 cut(s)	286, 294, 316, 672
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PshBI	ATTAAT	1 cut(s)	684
Psp6I	CCWGG	2 cut(s)	303, 333
PspGI	CCWGG	2 cut(s)	303, 333
PspN4I	GGNNCC	2 cut(s)	120, 309
PstNI	CAGNNNCTG	2 cut(s)	268, 538
PsuI	RGATCY	3 cut(s)	307, 504, 803
PvuII	CAGCTG	1 cut(s)	673
RsaI	GTAC	2 cut(s)	54, 134
RsaNI	GTAC	2 cut(s)	53, 133
SaqAI	TTAA	1 cut(s)	684
SatI	GCNGC	4 cut(s)	285, 293, 315, 671
Sau3AI	GATC	7 cut(s)	199, 259, 307, 504, 606, 688, 803
ScaI	AGTACT	1 cut(s)	134
SchI	GAGTC	1 cut(s)	391
ScrFI	CCNGG	2 cut(s)	305, 335
SfaNI	GCATC	4 cut(s)	255, 347, 517, 649
SfcI	CTRYAG	1 cut(s)	463
Sse9I	AATT	1 cut(s)	12
SseBI	AGGCCT	1 cut(s)	47
SsiI	CCGC	1 cut(s)	662
StuI	AGGCCT	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	303, 333
StyI	CCWWGG	1 cut(s)	48
TaaI	ACNGT	4 cut(s)	467, 631, 642, 947
TaiI	ACGT	1 cut(s)	557
TaqI	TCGA	2 cut(s)	400, 472
TasI	AATT	1 cut(s)	12
TatI	WGTACW	1 cut(s)	132
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	684
Tru9I	TTAA	1 cut(s)	684
TscAI	CASTG	1 cut(s)	952
TseI	GCWGC	4 cut(s)	284, 292, 314, 670
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	1 cut(s)	403
TspRI	CASTG	1 cut(s)	952
VspI	ATTAAT	1 cut(s)	684
XmiI	GTMKAC	1 cut(s)	547
XmnI	GAANNNNTTC	1 cut(s)	714
ZrmI	AGTACT	1 cut(s)	134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.