Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0014058

Physical Location & Seq

Genomic Coordinates Forward (+)

14378672 .. 14379571

Gene Structure 900 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 900 bp

ATGGAGTCAGCGCCAAATCTTTCCCGGTCTTTCAAACCCAAACTAAACCGGGTACGAACCGGATTCGTTGGTATTTGCAAGTGTGACCCGATTACGAATAAACAAAAAAGTCATAATAAAAAAAAAGATAACGAGAAAACCAAGACACAACCCAAACGACTCTCCTCAGATGCAGCAAAAGCAATGTGCACATTAGAGAAGCGCGGCGATCTCTTCTTCCTAACCCTCACCGGAGACGACGACCACCGCCTCGGCCTCCCAATCATCGACTCCCTCCTCTCCGCCATCGCCGAAGCCAAGTCCCAAGCCACGCGCGGCTCCGTCCTCATCACCACCGCCCAAGGCAAGTTCTTCTCTAATGGCTTCGACCTCGGCTGGGCCCAATCCGCCGGCTCCGCCACCGCTGCCCGCGCCCGCCTCAATCAAATGGTCCTCGCCTTCAAGCCGGTCGTCGTCGCGCTCCTCTCGCTCCCGATGCCGACGATCGCCGCAGTCCAAGGCCACGCCGCCGCAGCCGGCTTCTTGTTCGCCCTGAGCCACGATTACTTCCTGATGAGGCGCGACAGAGGTGTGCTGTACATGAGCGAGGTCGATTTGGGGCTGCCGTTCCCGGACTACTTCACGGCGGCGTTTCGGTCGAAGATCGGGTCGGTGTCGGGTCGGAGGGACGTGATGCTGAGGGGGATGAAGGTGAAGGGAGAGGAGGCGGTGAAAATGGGGATCGTGGAGTCGGCGCACGATAGCGCGGAGAGCACGGTGGAGGCTGCGGTGCGCCTGGGGGAGCAGTTGGGGAAGAGGAAGTGGAACGGCGACGTTTACGCGGAGATCAGGAAGAGCTTGTATCCGGAGTTGTGTGGAGTGCTTGGAGTGGCGATTGCTACTCCAAAGGCAAAGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004165 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005777 GO:0005829 GO:0006082 GO:0006629 GO:0006631 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009056 GO:0009062 GO:0009628 GO:0009653 GO:0009719 GO:0009725 GO:0009733 GO:0009850 GO:0009888 GO:0009987 GO:0010015 GO:0010033 GO:0010053 GO:0010054 GO:0010243 GO:0010817 GO:0014070 GO:0016042 GO:0016049 GO:0016054 GO:0016853 GO:0016860 GO:0016863 GO:0019752 GO:0021700 GO:0022622 GO:0030154 GO:0032501 GO:0032502 GO:0032787 GO:0034641 GO:0040007 GO:0042221 GO:0042430 GO:0042445 GO:0042579 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046395 GO:0046483 GO:0048364 GO:0048468 GO:0048469 GO:0048588 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048767 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072329 GO:0080024 GO:0080026 GO:0080147 GO:0080167 GO:0090558 GO:0090627 GO:0099402 GO:1901360 GO:1901564 GO:1901575 GO:1901698 GO:1901700 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 ko04626 map00062 map01110 map04626

Pfam Domains

Protein Families

ECH_1

Protein Analysis

300

Amino Acids

32.45

Weight (kDa)

9.73

Isoelectric Point (pI)

37.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ECH_2	PF16113	84 - 251	2.6e-06	Enoyl-CoA hydratase/isomerase
ECH_1	PF00378	88 - 265	2.9e-19	Enoyl-CoA hydratase/isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014058)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G14430 AT4G14440
fragaria_vesca	FvH4_4g03200
malus_domestica	MD13G1210400.v1.1
prunus_persica	Prupe.1G034900_v2.0.a1
pyrus_communis	pycom13g18290
rosa_chinensis	RchiOBHm_Chr4g0391851
rosa_laevigata	RLG00000009854
rosa_multiflora	Rmu_sc0000383.1_g000017 Rmu_sc0007693.1_g000007
rosa_roxburghii	Rroxscaffold_5G00337180
rosa_rugosa	Rorug03G0336500
rosa_samantha	Rh4AG038900 Rh4BG033500 Rh4CG041500 Rh4DG036400
rosa_wichuraiana	Rw4G003030

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	8 cut(s)	204, 313, 315, 411, 458, 561, 746, 821
AccIII	TCCGGA	1 cut(s)	844
AclWI	GGATC	1 cut(s)	728
AfaI	GTAC	2 cut(s)	54, 578
AfiI	CCNNNNNNNGG	1 cut(s)	376
AgsI	TTSAA	2 cut(s)	34, 442
AjiI	CACGTC	1 cut(s)	670
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	2 cut(s)	837, 895
AluI	AGCT	2 cut(s)	837, 895
Alw21I	GWGCWC	2 cut(s)	191, 755
Alw26I	GTCTC	1 cut(s)	228
Alw44I	GTGCAC	1 cut(s)	187
AlwI	GGATC	1 cut(s)	728
Aor13HI	TCCGGA	1 cut(s)	844
AoxI	GGCC	3 cut(s)	253, 378, 499
ApaI	GGGCCC	1 cut(s)	382
ApaLI	GTGCAC	1 cut(s)	187
ApeKI	GCWGC	5 cut(s)	173, 404, 512, 601, 764
ArsI	GACNNNNNNTTYG	2 cut(s)	632, 664
AspLEI	GCGC	9 cut(s)	13, 204, 315, 413, 460, 561, 736, 746, 774
AspS9I	GGNCC	3 cut(s)	378, 379, 430
AsuC2I	CCSGG	3 cut(s)	25, 50, 611
AsuHPI	GGTGA	4 cut(s)	220, 322, 703, 721
AvaII	GGWCC	1 cut(s)	430
BaeGI	GKGCMC	2 cut(s)	191, 382
BanII	GRGCYC	1 cut(s)	382
Bbv12I	GWGCWC	2 cut(s)	191, 755
BbvCI	CCTCAGC	1 cut(s)	677
BbvI	GCAGC	5 cut(s)	185, 391, 524, 588, 751
BccI	CCATC	1 cut(s)	293
BceAI	ACGGC	3 cut(s)	589, 639, 823
BciT130I	CCWGG	1 cut(s)	776
BciVI	GTATCC	1 cut(s)	852
BcnI	CCSGG	3 cut(s)	25, 50, 611
BcoDI	GTCTC	1 cut(s)	228
BfoI	RGCGCY	1 cut(s)	14
BfuI	GTATCC	1 cut(s)	852
Bme1390I	CCNGG	4 cut(s)	25, 50, 611, 776
Bme18I	GGWCC	1 cut(s)	430
BmgBI	CACGTC	1 cut(s)	670
BmgT120I	GGNCC	3 cut(s)	378, 379, 430
BmiI	GGNNCC	3 cut(s)	319, 380, 394
BmrFI	CCNGG	4 cut(s)	25, 50, 611, 776
BmsI	GCATC	3 cut(s)	160, 465, 663
Bpu10I	CCTNAGC	2 cut(s)	533, 677
BpuMI	CCSGG	3 cut(s)	25, 50, 611
BsaJI	CCNNGG	5 cut(s)	250, 340, 370, 496, 775
BsaWI	WCCGGW	3 cut(s)	59, 230, 844
Bsc4I	CCNNNNNNNGG	1 cut(s)	376
Bse118I	RCCGGY	3 cut(s)	389, 445, 515
Bse3DI	GCAATG	1 cut(s)	189
BseAI	TCCGGA	1 cut(s)	844
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	5 cut(s)	250, 340, 370, 496, 775
BseGI	GGATG	1 cut(s)	690
BseLI	CCNNNNNNNGG	1 cut(s)	376
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	3 cut(s)	180, 524, 668
BseRI	GAGGAG	4 cut(s)	154, 266, 452, 716
BseSI	GKGCMC	2 cut(s)	191, 382
BseXI	GCAGC	5 cut(s)	185, 391, 524, 588, 751
BseYI	CCCAGC	1 cut(s)	375
Bsh1236I	CGCG	8 cut(s)	204, 313, 315, 411, 458, 561, 746, 821
Bsh1285I	CGRYCG	3 cut(s)	450, 486, 638
BshFI	GGCC	3 cut(s)	255, 380, 501
BsiEI	CGRYCG	3 cut(s)	450, 486, 638
BsiHKAI	GWGCWC	2 cut(s)	191, 755
BsiSI	CCGG	9 cut(s)	25, 49, 60, 231, 390, 446, 516, 611, 845
BslFI	GGGAC	2 cut(s)	286, 680
BslI	CCNNNNNNNGG	1 cut(s)	376
BsmAI	GTCTC	1 cut(s)	228
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	286, 680
BsnI	GGCC	3 cut(s)	255, 380, 501
Bsp120I	GGGCCC	1 cut(s)	378
Bsp1286I	GDGCHC	3 cut(s)	191, 382, 755
Bsp13I	TCCGGA	1 cut(s)	844
Bsp1407I	TGTACA	1 cut(s)	576
Bsp143I	GATC	5 cut(s)	208, 483, 642, 720, 825
BspANI	GGCC	3 cut(s)	255, 380, 501
BspCNI	CTCAG	3 cut(s)	179, 525, 669
BspEI	TCCGGA	1 cut(s)	844
BspFNI	CGCG	8 cut(s)	204, 313, 315, 411, 458, 561, 746, 821
BspLI	GGNNCC	3 cut(s)	319, 380, 394
BspPI	GGATC	1 cut(s)	728
BspQI	GCTCTTC	1 cut(s)	827
BsrDI	GCAATG	1 cut(s)	189
BsrFI	RCCGGY	3 cut(s)	389, 445, 515
BsrGI	TGTACA	1 cut(s)	576
BssAI	RCCGGY	3 cut(s)	389, 445, 515
BssECI	CCNNGG	5 cut(s)	250, 340, 370, 496, 775
BssMI	GATC	5 cut(s)	208, 483, 642, 720, 825
BssT1I	CCWWGG	2 cut(s)	340, 496
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	1 cut(s)	757
Bst6I	CTCTTC	3 cut(s)	218, 788, 827
BstAUI	TGTACA	1 cut(s)	576
BstC8I	GCNNGC	4 cut(s)	391, 409, 415, 517
BstDEI	CTNAG	3 cut(s)	166, 533, 677
BstF5I	GGATG	1 cut(s)	690
BstFNI	CGCG	8 cut(s)	204, 313, 315, 411, 458, 561, 746, 821
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	9 cut(s)	13, 204, 315, 413, 460, 561, 736, 746, 774
BstKTI	GATC	5 cut(s)	211, 486, 645, 723, 828
BstMAI	GTCTC	1 cut(s)	228
BstMBI	GATC	5 cut(s)	208, 483, 642, 720, 825
BstMCI	CGRYCG	3 cut(s)	450, 486, 638
BstMWI	GCNNNNNNNGC	9 cut(s)	179, 386, 395, 404, 410, 466, 475, 512, 750
BstNI	CCWGG	1 cut(s)	776
BstSCI	CCNGG	4 cut(s)	23, 48, 609, 774
BstSLI	GKGCMC	2 cut(s)	191, 382
BstUI	CGCG	8 cut(s)	204, 313, 315, 411, 458, 561, 746, 821
BstV1I	GCAGC	5 cut(s)	185, 391, 524, 588, 751
BsuI	GTATCC	1 cut(s)	852
BsuRI	GGCC	3 cut(s)	255, 380, 501
BtgZI	GCGATG	1 cut(s)	271
BtrI	CACGTC	1 cut(s)	670
BtsCI	GGATG	1 cut(s)	690
Cac8I	GCNNGC	4 cut(s)	391, 409, 415, 517
CfoI	GCGC	9 cut(s)	13, 204, 315, 413, 460, 561, 736, 746, 774
Cfr10I	RCCGGY	3 cut(s)	389, 445, 515
Cfr13I	GGNCC	3 cut(s)	378, 379, 430
Csp6I	GTAC	2 cut(s)	53, 577
CviAII	CATG	1 cut(s)	580
CviQI	GTAC	2 cut(s)	53, 577
DdeI	CTNAG	3 cut(s)	166, 533, 677
DpnI	GATC	5 cut(s)	210, 485, 644, 722, 827
DpnII	GATC	5 cut(s)	208, 483, 642, 720, 825
Eam1104I	CTCTTC	3 cut(s)	218, 788, 827
EarI	CTCTTC	3 cut(s)	218, 788, 827
EciI	GGCGGA	3 cut(s)	271, 376, 385
Eco130I	CCWWGG	2 cut(s)	340, 496
Eco24I	GRGCYC	1 cut(s)	382
Eco47I	GGWCC	1 cut(s)	430
EcoRII	CCWGG	1 cut(s)	774
EcoT14I	CCWWGG	2 cut(s)	340, 496
EcoT38I	GRGCYC	1 cut(s)	382
ErhI	CCWWGG	2 cut(s)	340, 496
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	1 cut(s)	583
FaiI	YATR	2 cut(s)	114, 581
FaqI	GGGAC	2 cut(s)	286, 680
FatI	CATG	1 cut(s)	579
FauI	CCCGC	2 cut(s)	416, 422
FokI	GGATG	1 cut(s)	697
FriOI	GRGCYC	1 cut(s)	382
GlaI	GCGC	9 cut(s)	12, 203, 314, 412, 459, 560, 735, 745, 773
GsaI	CCCAGC	1 cut(s)	379
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	3 cut(s)	255, 380, 501
HapII	CCGG	9 cut(s)	25, 49, 60, 231, 390, 446, 516, 611, 845
HhaI	GCGC	9 cut(s)	13, 204, 315, 413, 460, 561, 736, 746, 774
Hin1II	CATG	1 cut(s)	583
Hin6I	GCGC	9 cut(s)	11, 202, 313, 411, 458, 559, 734, 744, 772
HinP1I	GCGC	9 cut(s)	11, 202, 313, 411, 458, 559, 734, 744, 772
HinfI	GANTC	5 cut(s)	5, 63, 159, 269, 728
HpaII	CCGG	9 cut(s)	25, 49, 60, 231, 390, 446, 516, 611, 845
HphI	GGTGA	4 cut(s)	220, 322, 703, 721
Hpy166II	GTNNAC	2 cut(s)	189, 817
Hpy188I	TCNGA	3 cut(s)	169, 663, 899
Hpy188III	TCNNGA	4 cut(s)	472, 550, 829, 845
Hpy8I	GTNNAC	2 cut(s)	189, 817
Hpy99I	CGWCG	5 cut(s)	242, 455, 458, 484, 815
HpyAV	CCTTC	3 cut(s)	448, 682, 688
HpyCH4III	ACNGT	1 cut(s)	757
HpyCH4IV	ACGT	2 cut(s)	669, 813
HpyCH4V	TGCA	3 cut(s)	78, 173, 189
HpyF10VI	GCNNNNNNNGC	9 cut(s)	179, 386, 395, 404, 410, 466, 475, 512, 750
HpyF3I	CTNAG	3 cut(s)	166, 533, 677
HpySE526I	ACGT	2 cut(s)	669, 813
Hsp92II	CATG	1 cut(s)	583
HspAI	GCGC	9 cut(s)	11, 202, 313, 411, 458, 559, 734, 744, 772
Kpn2I	TCCGGA	1 cut(s)	844
KroI	GCCGGC	2 cut(s)	389, 515
KroNI	GCCGGC	2 cut(s)	391, 517
Kzo9I	GATC	5 cut(s)	208, 483, 642, 720, 825
LguI	GCTCTTC	1 cut(s)	827
LmnI	GCTCC	5 cut(s)	323, 398, 465, 474, 781
Lsp1109I	GCAGC	5 cut(s)	185, 391, 524, 588, 751
LweI	GCATC	3 cut(s)	160, 465, 663
MaeII	ACGT	2 cut(s)	669, 813
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	5 cut(s)	210, 485, 644, 722, 827
MboI	GATC	5 cut(s)	208, 483, 642, 720, 825
MboII	GAAGA	6 cut(s)	205, 208, 343, 652, 805, 844
MhlI	GDGCHC	3 cut(s)	191, 382, 755
MlyI	GAGTC	4 cut(s)	14, 153, 263, 737
MmeI	TCCRAC	1 cut(s)	641
MroI	TCCGGA	1 cut(s)	844
MroNI	GCCGGC	2 cut(s)	389, 515
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	9 cut(s)	25, 49, 60, 231, 390, 446, 516, 611, 845
MspR9I	CCNGG	4 cut(s)	25, 50, 611, 776
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	8 cut(s)	204, 313, 315, 411, 458, 561, 746, 821
MwoI	GCNNNNNNNGC	9 cut(s)	179, 386, 395, 404, 410, 466, 475, 512, 750
NaeI	GCCGGC	2 cut(s)	391, 517
NciI	CCSGG	3 cut(s)	25, 50, 611
NdeII	GATC	5 cut(s)	208, 483, 642, 720, 825
NgoMIV	GCCGGC	2 cut(s)	389, 515
NlaIII	CATG	1 cut(s)	583
NlaIV	GGNNCC	3 cut(s)	319, 380, 394
NmeAIII	GCCGAG	2 cut(s)	231, 351
NmuCI	GTSAC	1 cut(s)	83
PciSI	GCTCTTC	1 cut(s)	827
PdiI	GCCGGC	2 cut(s)	391, 517
PfeI	GAWTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	609
Ple19I	CGATCG	1 cut(s)	486
PleI	GAGTC	4 cut(s)	13, 153, 263, 736
PpsI	GAGTC	4 cut(s)	13, 153, 263, 736
Psp6I	CCWGG	1 cut(s)	774
PspFI	CCCAGC	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	3 cut(s)	319, 380, 394
PspOMI	GGGCCC	1 cut(s)	378
PspPI	GGNCC	3 cut(s)	378, 379, 430
PvuI	CGATCG	1 cut(s)	486
RsaI	GTAC	2 cut(s)	54, 578
RsaNI	GTAC	2 cut(s)	53, 577
SapI	GCTCTTC	1 cut(s)	827
Sau3AI	GATC	5 cut(s)	208, 483, 642, 720, 825
Sau96I	GGNCC	3 cut(s)	378, 379, 430
SchI	GAGTC	4 cut(s)	14, 153, 263, 737
ScrFI	CCNGG	4 cut(s)	25, 50, 611, 776
SduI	GDGCHC	3 cut(s)	191, 382, 755
SetI	ASST	8 cut(s)	372, 571, 591, 672, 693, 816, 839, 897
SfaNI	GCATC	3 cut(s)	160, 465, 663
SinI	GGWCC	1 cut(s)	430
StyD4I	CCNGG	4 cut(s)	23, 48, 609, 774
StyI	CCWWGG	2 cut(s)	340, 496
TaaI	ACNGT	1 cut(s)	757
TaiI	ACGT	2 cut(s)	672, 816
TaqI	TCGA	4 cut(s)	267, 366, 591, 638
TaqII	GACCGA	1 cut(s)	624
TatI	WGTACW	1 cut(s)	576
TauI	GCSGC	6 cut(s)	207, 318, 491, 509, 512, 629
TfiI	GAWTC	1 cut(s)	63
TseFI	GTSAC	1 cut(s)	83
TseI	GCWGC	5 cut(s)	173, 404, 512, 601, 764
Tsp45I	GTSAC	1 cut(s)	83
TspDTI	ATGAA	1 cut(s)	701
TspGWI	ACGGA	1 cut(s)	310
VneI	GTGCAC	1 cut(s)	187
VpaK11BI	GGWCC	1 cut(s)	430

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.