pycom13g21270

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0017064
Physical Location & Seq
Reverse (-)
17617457 .. 17617901
445 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 396 bp
ATGATACATGTGGGGTATATTCCCGCTTCAGCTTCTTTATATTATTTTCACAGTGAGTTGTCCAACCCCAAGTCACCAACCCCCCAAATCCCCCAATCCGGCAGCGCTCTCTCAAAAACCCGGATCAAAACAAACCTTACCCATAACACTAACCTCACACAAATCCCAGAGAAGTTAAATCCCAGGAGAAAAATGTGGCTGGCGTGCGTGTGCGACGAGGAAGAGAAGGAGCTGGGGAGGCAGCAAGCTCCTGGATCATGCCCGCACTGCCGAGGCAAAGTGCAAGCGGTGGATGTCGAGGTTCAACGGAAGCTTTGCCTTCTGCCCTTGTGCTTCAAGATCAAGAGGAAGTACTTCTGTACTCTCTGCTCCAGGCGCTTGGTCCTGGACTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.96

Weight (kDa)

9.4

Isoelectric Point (pI)

52.72

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017064)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G29905 AT5G57123
fragaria_vesca FvH4_4g07010
malus_domestica MD13G1240400.v1.1 MD16G1246800.v1.1
prunus_persica Prupe.1G073400_v2.0.a1
pyrus_communis pycom13g21270
rosa_chinensis RchiOBHm_Chr4g0399141
rosa_laevigata RLG00000009296
rosa_multiflora Rmu_sc0004767.1_g000001
rosa_roxburghii Rroxscaffold_5G00344100
rosa_samantha Rh4CG100400
rosa_wichuraiana Rw4G007600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 24, 263, 287
AclWI GGATC 2 cut(s) 131, 262
AcuI CTGAAG 1 cut(s) 12
AfaI GTAC 2 cut(s) 353, 361
AfeI AGCGCT 1 cut(s) 106
AfiI CCNNNNNNNGG 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 7
AgsI TTSAA 2 cut(s) 305, 337
AjnI CCWGG 4 cut(s) 182, 250, 371, 384
AluBI AGCT 4 cut(s) 32, 232, 248, 313
AluI AGCT 4 cut(s) 32, 232, 248, 313
AlwI GGATC 2 cut(s) 131, 262
Aor51HI AGCGCT 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 102, 241
Asp700I GAANNNNTTC 1 cut(s) 353
AspLEI GCGC 2 cut(s) 107, 378
AspS9I GGNCC 1 cut(s) 382
AsuC2I CCSGG 1 cut(s) 121
AsuHPI GGTGA 1 cut(s) 66
AvaII GGWCC 1 cut(s) 382
BbvI GCAGC 2 cut(s) 114, 253
BciT130I CCWGG 4 cut(s) 184, 252, 373, 386
BcnI CCSGG 1 cut(s) 121
BfaI CTAG 1 cut(s) 394
BfoI RGCGCY 2 cut(s) 108, 379
BisI GCNGC 2 cut(s) 103, 242
BlsI GCNGC 2 cut(s) 104, 243
BmcAI AGTACT 1 cut(s) 353
Bme1390I CCNGG 5 cut(s) 121, 184, 252, 373, 386
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 1 cut(s) 382
BmrFI CCNGG 5 cut(s) 121, 184, 252, 373, 386
BpmI CTGGAG 1 cut(s) 355
BpuMI CCSGG 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 182, 271
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseBI CCWGG 4 cut(s) 184, 252, 373, 386
BseDI CCNNGG 2 cut(s) 182, 271
BseGI GGATG 1 cut(s) 298
BseLI CCNNNNNNNGG 1 cut(s) 98
BseXI GCAGC 2 cut(s) 114, 253
BseYI CCCAGC 1 cut(s) 232
BsiSI CCGG 2 cut(s) 99, 121
BslI CCNNNNNNNGG 1 cut(s) 98
Bsp143I GATC 3 cut(s) 123, 254, 339
BspACI CCGC 3 cut(s) 24, 263, 287
BspPI GGATC 2 cut(s) 131, 262
BssECI CCNNGG 2 cut(s) 182, 271
BssMI GATC 3 cut(s) 123, 254, 339
Bst2UI CCWGG 4 cut(s) 184, 252, 373, 386
Bst4CI ACNGT 1 cut(s) 53
Bst6I CTCTTC 1 cut(s) 216
BstC8I GCNNGC 5 cut(s) 201, 205, 246, 263, 285
BstF5I GGATG 1 cut(s) 298
BstH2I RGCGCY 2 cut(s) 108, 379
BstHHI GCGC 2 cut(s) 107, 378
BstKTI GATC 3 cut(s) 126, 257, 342
BstMBI GATC 3 cut(s) 123, 254, 339
BstMWI GCNNNNNNNGC 3 cut(s) 238, 267, 375
BstNI CCWGG 4 cut(s) 184, 252, 373, 386
BstNSI RCATGY 1 cut(s) 11
BstSCI CCNGG 5 cut(s) 119, 182, 250, 371, 384
BstV1I GCAGC 2 cut(s) 114, 253
BstXI CCANNNNNNTGG 1 cut(s) 379
BtsCI GGATG 1 cut(s) 298
BtsI GCAGTG 1 cut(s) 265
BtsIMutI CAGTG 2 cut(s) 58, 265
Cac8I GCNNGC 5 cut(s) 201, 205, 246, 263, 285
CfoI GCGC 2 cut(s) 107, 378
Cfr13I GGNCC 1 cut(s) 382
Csp6I GTAC 2 cut(s) 352, 360
CviAII CATG 2 cut(s) 8, 258
CviJI RGCY 5 cut(s) 32, 199, 232, 248, 313
CviKI_1 RGCY 5 cut(s) 32, 199, 232, 248, 313
CviQI GTAC 2 cut(s) 352, 360
DpnI GATC 3 cut(s) 125, 256, 341
DpnII GATC 3 cut(s) 123, 254, 339
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco47I GGWCC 1 cut(s) 382
Eco47III AGCGCT 1 cut(s) 106
Eco57I CTGAAG 1 cut(s) 12
EcoRII CCWGG 4 cut(s) 182, 250, 371, 384
FaeI CATG 2 cut(s) 11, 261
FaiI YATR 5 cut(s) 9, 18, 40, 144, 259
FatI CATG 2 cut(s) 7, 257
FauI CCCGC 2 cut(s) 31, 270
Fnu4HI GCNGC 2 cut(s) 103, 242
FokI GGATG 1 cut(s) 305
Fsp4HI GCNGC 2 cut(s) 103, 242
FspBI CTAG 1 cut(s) 394
GlaI GCGC 2 cut(s) 106, 377
GluI GCNGC 2 cut(s) 103, 242
GsaI CCCAGC 1 cut(s) 236
GsuI CTGGAG 1 cut(s) 355
HaeII RGCGCY 2 cut(s) 108, 379
HapII CCGG 2 cut(s) 99, 121
HhaI GCGC 2 cut(s) 107, 378
Hin1II CATG 2 cut(s) 11, 261
Hin6I GCGC 2 cut(s) 105, 376
HinP1I GCGC 2 cut(s) 105, 376
HindIII AAGCTT 1 cut(s) 311
HpaII CCGG 2 cut(s) 99, 121
HphI GGTGA 1 cut(s) 66
Hpy188III TCNNGA 2 cut(s) 337, 343
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 2 cut(s) 220, 329
HpyCH4III ACNGT 1 cut(s) 53
HpyCH4V TGCA 1 cut(s) 283
HpyF10VI GCNNNNNNNGC 3 cut(s) 238, 267, 375
Hsp92II CATG 2 cut(s) 11, 261
HspAI GCGC 2 cut(s) 105, 376
Kzo9I GATC 3 cut(s) 123, 254, 339
LmnI GCTCC 3 cut(s) 229, 253, 374
Lsp1109I GCAGC 2 cut(s) 114, 253
MaeI CTAG 1 cut(s) 394
MaeIII GTNAC 1 cut(s) 72
MalI GATC 3 cut(s) 125, 256, 341
MboI GATC 3 cut(s) 123, 254, 339
MboII GAAGA 1 cut(s) 233
MmeI TCCRAC 1 cut(s) 87
MnlI CCTC 6 cut(s) 164, 211, 231, 266, 292, 339
MroXI GAANNNNTTC 1 cut(s) 353
MseI TTAA 1 cut(s) 176
MspI CCGG 2 cut(s) 99, 121
MspR9I CCNGG 5 cut(s) 121, 184, 252, 373, 386
MvaI CCWGG 4 cut(s) 184, 252, 373, 386
MwoI GCNNNNNNNGC 3 cut(s) 238, 267, 375
NciI CCSGG 1 cut(s) 121
NdeII GATC 3 cut(s) 123, 254, 339
NlaIII CATG 2 cut(s) 11, 261
NmeAIII GCCGAG 1 cut(s) 296
NmuCI GTSAC 1 cut(s) 72
NspI RCATGY 1 cut(s) 11
PciI ACATGT 1 cut(s) 7
PdmI GAANNNNTTC 1 cut(s) 353
PfoI TCCNGGA 2 cut(s) 250, 384
PkrI GCNGC 2 cut(s) 104, 243
PscI ACATGT 1 cut(s) 7
Psp6I CCWGG 4 cut(s) 182, 250, 371, 384
PspFI CCCAGC 1 cut(s) 232
PspGI CCWGG 4 cut(s) 182, 250, 371, 384
PspPI GGNCC 1 cut(s) 382
RsaI GTAC 2 cut(s) 353, 361
RsaNI GTAC 2 cut(s) 352, 360
SaqAI TTAA 1 cut(s) 176
SatI GCNGC 2 cut(s) 103, 242
Sau3AI GATC 3 cut(s) 123, 254, 339
Sau96I GGNCC 1 cut(s) 382
ScaI AGTACT 1 cut(s) 353
ScrFI CCNGG 5 cut(s) 121, 184, 252, 373, 386
SetI ASST 7 cut(s) 34, 138, 156, 234, 250, 303, 315
SinI GGWCC 1 cut(s) 382
SsiI CCGC 3 cut(s) 24, 263, 287
SspMI CTAG 1 cut(s) 394
StyD4I CCNGG 5 cut(s) 119, 182, 250, 371, 384
TaaI ACNGT 1 cut(s) 53
TaqI TCGA 1 cut(s) 297
TatI WGTACW 2 cut(s) 351, 359
Tru1I TTAA 1 cut(s) 176
Tru9I TTAA 1 cut(s) 176
TscAI CASTG 2 cut(s) 58, 272
TseFI GTSAC 1 cut(s) 72
TseI GCWGC 2 cut(s) 102, 241
Tsp45I GTSAC 1 cut(s) 72
TspGWI ACGGA 1 cut(s) 322
TspRI CASTG 2 cut(s) 58, 272
VpaK11BI GGWCC 1 cut(s) 382
XceI RCATGY 1 cut(s) 11
XmnI GAANNNNTTC 1 cut(s) 353
XspI CTAG 1 cut(s) 394
ZrmI AGTACT 1 cut(s) 353
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.