Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0004325

Physical Location & Seq

Genomic Coordinates Forward (+)

17924183 .. 17938697

Gene Structure 14515 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGGTATTGGATTTGGGACAAGTAGCACATAATGGAGCTATTTTCGTTGAAATTTACTTGAGTGGTTCTCCTCTATATTCCGGACGGATCCGGAGAGACAGATCCGTTTTAATAGGAAAGAAGGAAACGCCCTCAAATTATTTGGCGCGATACCGCGGGAATGTAATTAAGCCAATATTTCCGTCGGTTATTAGTTTTTCCACATCAACAGCAAGCAACACACTCGCACTCCAGTCCTCCATATCCACCTGGGCATTTCTTGAAGAAGAGTACCCTGACGACACCCTTAAATTTATGCGTCTTGCTATAGAACAGGCAAATGAAGCTTTGGACAGCCTTGAAGTTCCTGTTGGCTGTGTGATTGTTGAAGATGGGAAGGTCATAGCCTCGGGAAGAAATCGAACTAATGAGACGCGAAATGCTACAAGGCATGCAGAGATGGAAGCCATTGATACTCTTCTTGAGCAGTGGAGAGAACAGAGGCTTTCAAAGTCACAAGTTGCCGAAAAGTTTTCAAAATGTAGACTCTATGTTACATGTGAGCCATGCATAATGTGTGCGGCGGCTTTATCATTTATTGGAATAAGGGAAGTATTTTATGGTTGTGCCAATGACAAATTTGGTGGGTGTGGATCAATATTGTCGGTGTACTCAAGTAGCTCTGAGCCACAAACGAGTGGTGGAGCTCCAGAGGGGAAAGGATTCAAATGCACTGGAGGGATAATGGCAACAGAAGCAATCTCACTTTTTCGCAGTTTTTATGAGCAGGGAAACCCTAATGCTCCAAAGCCTCATAGGCCTCTTGCTCAACAAGCAACGCAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004000 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006139 GO:0006396 GO:0006399 GO:0006400 GO:0006725 GO:0006807 GO:0008033 GO:0008150 GO:0008152 GO:0008251 GO:0009451 GO:0009987 GO:0010467 GO:0016070 GO:0016787 GO:0016810 GO:0016814 GO:0019239 GO:0032991 GO:0034470 GO:0034641 GO:0034660 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0052717 GO:0052718 GO:0071704 GO:0090304 GO:1901360 GO:1902494

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

dCMP_cyt_deam_1

Protein Analysis

275

Amino Acids

30.03

Weight (kDa)

6.83

Isoelectric Point (pI)

36.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MafB19-deam	PF14437	94 - 211	2.8e-18	MafB19-like deaminase
dCMP_cyt_deam_1	PF00383	96 - 202	5.1e-24	Cytidine and deoxycytidylate deaminase zinc-binding region
Bd3614-deam	PF14439	120 - 194	1.8e-06	Bd3614-like deaminase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004325)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175 AT1G48175
fragaria_vesca	FvH4_4g07280 FvH4_5g15360 FvH4_5g15360
malus_domestica	MD13G1241600.v1.1
prunus_persica	Prupe.1G075100_v2.0.a1
pyrus_communis	pycom13g21350
rosa_chinensis	RchiOBHm_Chr4g0399541 RchiOBHm_Chr4g0399571 RchiOBHm_Chr7g0180711
rosa_laevigata	RLG00000005238 RLG00000009262
rosa_multiflora	Rmu_sc0002285.1_g000033
rosa_roxburghii	Rroxscaffold_3G00272630 Rroxscaffold_5G00344420
rosa_rugosa	Rorug04G0017400 Rorug06G0435100
rosa_samantha	Rh4AG095200 Rh4BG092600 Rh4CG103700 Rh4DG087600 Rh7AG036800 Rh7BG036600 Rh7CG038300 Rh7DG036800
rosa_wichuraiana	Rw4G007830 Rw7G003040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	523
AccII	CGCG	3 cut(s)	148, 156, 415
AccIII	TCCGGA	2 cut(s)	80, 90
AciI	CCGC	4 cut(s)	154, 156, 560, 563
AclWI	GGATC	4 cut(s)	82, 95, 96, 640
AcsI	RAATTY	3 cut(s)	51, 290, 617
AfaI	GTAC	2 cut(s)	272, 650
AflIII	ACRYGT	1 cut(s)	536
AgsI	TTSAA	7 cut(s)	50, 263, 341, 368, 489, 516, 706
AjnI	CCWGG	1 cut(s)	248
AjuI	GAANNNNNNNTTGG	2 cut(s)	333, 365
AluBI	AGCT	4 cut(s)	38, 326, 660, 686
AluI	AGCT	4 cut(s)	38, 326, 660, 686
Alw21I	GWGCWC	1 cut(s)	688
Alw26I	GTCTC	2 cut(s)	90, 404
AlwI	GGATC	4 cut(s)	82, 95, 96, 640
Ama87I	CYCGRG	1 cut(s)	388
Aor13HI	TCCGGA	2 cut(s)	80, 90
AoxI	GGCC	1 cut(s)	797
ApoI	RAATTY	3 cut(s)	51, 290, 617
Asp700I	GAANNNNTTC	1 cut(s)	701
AspLEI	GCGC	1 cut(s)	148
AvaI	CYCGRG	1 cut(s)	388
BamHI	GGATCC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	688
Bbv12I	GWGCWC	1 cut(s)	688
BccI	CCATC	2 cut(s)	365, 433
BcgI	CGANNNNNNTGC	2 cut(s)	205, 239
BciT130I	CCWGG	1 cut(s)	250
BcoDI	GTCTC	2 cut(s)	90, 404
BfmI	CTRYAG	1 cut(s)	306
BglI	GCCNNNNNGGC	1 cut(s)	796
BisI	GCNGC	2 cut(s)	561, 564
BlsI	GCNGC	2 cut(s)	562, 565
Bme1390I	CCNGG	1 cut(s)	250
BmeT110I	CYCGRG	1 cut(s)	388
BmiI	GGNNCC	1 cut(s)	89
BmrFI	CCNGG	1 cut(s)	250
BplI	GAGNNNNNCTC	2 cut(s)	52, 84
BpmI	CTGGAG	3 cut(s)	215, 672, 735
BpuEI	CTTGAG	3 cut(s)	79, 482, 637
BsaJI	CCNNGG	3 cut(s)	154, 249, 387
BsaWI	WCCGGW	2 cut(s)	80, 90
BsaXI	ACNNNNNCTCC	2 cut(s)	213, 243
Bse1I	ACTGG	2 cut(s)	232, 718
BseAI	TCCGGA	2 cut(s)	80, 90
BseBI	CCWGG	1 cut(s)	250
BseDI	CCNNGG	3 cut(s)	154, 249, 387
BseMII	CTCAG	1 cut(s)	654
BseNI	ACTGG	2 cut(s)	232, 718
BseRI	GAGGAG	1 cut(s)	60
Bsh1236I	CGCG	3 cut(s)	148, 156, 415
BshFI	GGCC	1 cut(s)	799
BsiHKAI	GWGCWC	1 cut(s)	688
BsiHKCI	CYCGRG	1 cut(s)	388
BsiSI	CCGG	2 cut(s)	81, 91
BslFI	GGGAC	1 cut(s)	30
BsmAI	GTCTC	2 cut(s)	90, 404
BsmBI	CGTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	30
BsnI	GGCC	1 cut(s)	799
BsoBI	CYCGRG	1 cut(s)	388
Bsp1286I	GDGCHC	1 cut(s)	688
Bsp13I	TCCGGA	2 cut(s)	80, 90
Bsp143I	GATC	3 cut(s)	87, 101, 632
BspACI	CCGC	4 cut(s)	154, 156, 560, 563
BspANI	GGCC	1 cut(s)	799
BspCNI	CTCAG	1 cut(s)	655
BspEI	TCCGGA	2 cut(s)	80, 90
BspFNI	CGCG	3 cut(s)	148, 156, 415
BspLI	GGNNCC	1 cut(s)	89
BspPI	GGATC	4 cut(s)	82, 95, 96, 640
BsrI	ACTGG	2 cut(s)	232, 718
BssECI	CCNNGG	3 cut(s)	154, 249, 387
BssMI	GATC	3 cut(s)	87, 101, 632
Bst2UI	CCWGG	1 cut(s)	250
Bst6I	CTCTTC	2 cut(s)	261, 462
BstC8I	GCNNGC	2 cut(s)	214, 432
BstDEI	CTNAG	1 cut(s)	663
BstDSI	CCRYGG	1 cut(s)	154
BstFNI	CGCG	3 cut(s)	148, 156, 415
BstHHI	GCGC	1 cut(s)	148
BstKTI	GATC	3 cut(s)	90, 104, 635
BstMAI	GTCTC	2 cut(s)	90, 404
BstMBI	GATC	3 cut(s)	87, 101, 632
BstMWI	GCNNNNNNNGC	4 cut(s)	323, 734, 796, 812
BstNI	CCWGG	1 cut(s)	250
BstNSI	RCATGY	2 cut(s)	434, 540
BstSCI	CCNGG	1 cut(s)	248
BstSFI	CTRYAG	1 cut(s)	306
BstUI	CGCG	3 cut(s)	148, 156, 415
BstX2I	RGATCY	2 cut(s)	87, 101
BstYI	RGATCY	2 cut(s)	87, 101
BsuRI	GGCC	1 cut(s)	799
BtgI	CCRYGG	1 cut(s)	154
BtsI	GCAGTG	1 cut(s)	473
BtsIMutI	CAGTG	2 cut(s)	473, 711
Cac8I	GCNNGC	2 cut(s)	214, 432
CfoI	GCGC	1 cut(s)	148
Cfr42I	CCGCGG	1 cut(s)	157
CseI	GACGC	2 cut(s)	287, 421
Csp6I	GTAC	2 cut(s)	271, 649
CspCI	CAANNNNNGTGG	2 cut(s)	604, 639
CviAII	CATG	3 cut(s)	431, 537, 546
CviQI	GTAC	2 cut(s)	271, 649
DdeI	CTNAG	1 cut(s)	663
DpnI	GATC	3 cut(s)	89, 103, 634
DpnII	GATC	3 cut(s)	87, 101, 632
Eam1104I	CTCTTC	2 cut(s)	261, 462
EarI	CTCTTC	2 cut(s)	261, 462
Ecl136II	GAGCTC	1 cut(s)	686
Eco147I	AGGCCT	1 cut(s)	799
Eco24I	GRGCYC	1 cut(s)	688
Eco53kI	GAGCTC	1 cut(s)	686
Eco88I	CYCGRG	1 cut(s)	388
EcoICRI	GAGCTC	1 cut(s)	686
EcoRII	CCWGG	1 cut(s)	248
EcoT22I	ATGCAT	1 cut(s)	551
EcoT38I	GRGCYC	1 cut(s)	688
Esp3I	CGTCTC	1 cut(s)	404
FaeI	CATG	3 cut(s)	434, 540, 549
FaqI	GGGAC	1 cut(s)	30
FatI	CATG	3 cut(s)	430, 536, 545
FauI	CCCGC	1 cut(s)	149
FblI	GTMKAC	1 cut(s)	523
Fnu4HI	GCNGC	2 cut(s)	561, 564
FriOI	GRGCYC	1 cut(s)	688
Fsp4HI	GCNGC	2 cut(s)	561, 564
GlaI	GCGC	1 cut(s)	147
GluI	GCNGC	2 cut(s)	561, 564
GsuI	CTGGAG	3 cut(s)	215, 672, 735
HaeIII	GGCC	1 cut(s)	799
HapII	CCGG	2 cut(s)	81, 91
HgaI	GACGC	2 cut(s)	287, 421
HhaI	GCGC	1 cut(s)	148
Hin1II	CATG	3 cut(s)	434, 540, 549
Hin6I	GCGC	1 cut(s)	146
HinP1I	GCGC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	2 cut(s)	525, 702
HpaII	CCGG	2 cut(s)	81, 91
Hpy166II	GTNNAC	2 cut(s)	524, 649
Hpy188I	TCNGA	1 cut(s)	664
Hpy188III	TCNNGA	6 cut(s)	81, 91, 260, 390, 461, 689
Hpy8I	GTNNAC	2 cut(s)	524, 649
Hpy99I	CGWCG	1 cut(s)	187
HpyAV	CCTTC	2 cut(s)	115, 370
HpyCH4V	TGCA	3 cut(s)	434, 549, 711
HpyF10VI	GCNNNNNNNGC	4 cut(s)	323, 734, 796, 812
HpyF3I	CTNAG	1 cut(s)	663
Hsp92II	CATG	3 cut(s)	434, 540, 549
HspAI	GCGC	1 cut(s)	146
Kpn2I	TCCGGA	2 cut(s)	80, 90
KspI	CCGCGG	1 cut(s)	157
Kzo9I	GATC	3 cut(s)	87, 101, 632
LmnI	GCTCC	4 cut(s)	35, 683, 691, 787
MaeIII	GTNAC	2 cut(s)	492, 532
MalI	GATC	3 cut(s)	89, 103, 634
MboI	GATC	3 cut(s)	87, 101, 632
MboII	GAAGA	5 cut(s)	275, 278, 380, 405, 449
MflI	RGATCY	2 cut(s)	87, 101
MhlI	GDGCHC	1 cut(s)	688
MluCI	AATT	5 cut(s)	51, 136, 165, 290, 617
MlyI	GAGTC	1 cut(s)	519
MnlI	CCTC	9 cut(s)	81, 142, 247, 397, 474, 685, 710, 801, 810
Mph1103I	ATGCAT	1 cut(s)	551
MroI	TCCGGA	2 cut(s)	80, 90
MroXI	GAANNNNTTC	1 cut(s)	701
MseI	TTAA	3 cut(s)	110, 168, 288
MspA1I	CMGCKG	1 cut(s)	156
MspI	CCGG	2 cut(s)	81, 91
MspR9I	CCNGG	1 cut(s)	250
MvaI	CCWGG	1 cut(s)	250
MvnI	CGCG	3 cut(s)	148, 156, 415
MwoI	GCNNNNNNNGC	4 cut(s)	323, 734, 796, 812
NdeII	GATC	3 cut(s)	87, 101, 632
NlaIII	CATG	3 cut(s)	434, 540, 549
NlaIV	GGNNCC	1 cut(s)	89
NmuCI	GTSAC	1 cut(s)	492
NsiI	ATGCAT	1 cut(s)	551
NspI	RCATGY	2 cut(s)	434, 540
PaeI	GCATGC	1 cut(s)	434
PceI	AGGCCT	1 cut(s)	799
PciI	ACATGT	1 cut(s)	536
PdmI	GAANNNNTTC	1 cut(s)	701
PfeI	GAWTC	1 cut(s)	702
PkrI	GCNGC	2 cut(s)	562, 565
PleI	GAGTC	1 cut(s)	519
PpsI	GAGTC	1 cut(s)	519
PscI	ACATGT	1 cut(s)	536
Psp124BI	GAGCTC	1 cut(s)	688
Psp6I	CCWGG	1 cut(s)	248
PspGI	CCWGG	1 cut(s)	248
PspN4I	GGNNCC	1 cut(s)	89
PsuI	RGATCY	2 cut(s)	87, 101
RsaI	GTAC	2 cut(s)	272, 650
RsaNI	GTAC	2 cut(s)	271, 649
SacI	GAGCTC	1 cut(s)	688
SacII	CCGCGG	1 cut(s)	157
SaqAI	TTAA	3 cut(s)	110, 168, 288
SatI	GCNGC	2 cut(s)	561, 564
Sau3AI	GATC	3 cut(s)	87, 101, 632
SchI	GAGTC	1 cut(s)	519
ScrFI	CCNGG	1 cut(s)	250
SduI	GDGCHC	1 cut(s)	688
SetI	ASST	6 cut(s)	40, 251, 328, 381, 662, 688
SfcI	CTRYAG	1 cut(s)	306
Sfr303I	CCGCGG	1 cut(s)	157
SgrBI	CCGCGG	1 cut(s)	157
SmlI	CTYRAG	3 cut(s)	58, 461, 652
SmoI	CTYRAG	3 cut(s)	58, 461, 652
SphI	GCATGC	1 cut(s)	434
Sse9I	AATT	5 cut(s)	51, 136, 165, 290, 617
SseBI	AGGCCT	1 cut(s)	799
SsiI	CCGC	4 cut(s)	154, 156, 560, 563
SspI	AATATT	2 cut(s)	177, 639
SstI	GAGCTC	1 cut(s)	688
StuI	AGGCCT	1 cut(s)	799
StyD4I	CCNGG	1 cut(s)	248
TaqI	TCGA	1 cut(s)	400
TasI	AATT	5 cut(s)	51, 136, 165, 290, 617
TatI	WGTACW	1 cut(s)	648
TauI	GCSGC	2 cut(s)	563, 566
TfiI	GAWTC	1 cut(s)	702
Tru1I	TTAA	3 cut(s)	110, 168, 288
Tru9I	TTAA	3 cut(s)	110, 168, 288
TscAI	CASTG	2 cut(s)	473, 718
TseFI	GTSAC	1 cut(s)	492
Tsp45I	GTSAC	1 cut(s)	492
TspDTI	ATGAA	1 cut(s)	336
TspGWI	ACGGA	3 cut(s)	94, 100, 171
TspRI	CASTG	2 cut(s)	473, 718
XapI	RAATTY	3 cut(s)	51, 290, 617
XceI	RCATGY	2 cut(s)	434, 540
XmiI	GTMKAC	1 cut(s)	523
XmnI	GAANNNNTTC	1 cut(s)	701
Zsp2I	ATGCAT	1 cut(s)	551

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.