pycom14g00710

Belongs to the Ca(2 ) cation antiporter (CaCA) (TC 2.A.19) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0009055
Physical Location & Seq
Reverse (-)
459676 .. 460311
636 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 552 bp
ATGGGTACCTTAGTTTTCTTACCAAAGTACAAAAATTACGTCATTTTCTTGAACATCTCGTCTCTGTTAGTGGGATGCGCTTTCTTGGTTGTACATTCCTATGCTTCAGACTTTTTGGTTCGAAGCACTTCTGAGATAAGCACTTCTGGGGTTTCCAGATTTTCTGATTCACTAGATTGCAAGGGTTTTCTTATTTTAGATGACCACAAAGCTAAGTGCTTTTACCTTAAATCCAACAACACATTTGTCTCCCAAGGCTATATAAACTACCTTAACATTTTCTACTGCAATTTTGGAACTTTTCCTCAATTGGGTTATTGTTGTAAGTTTCTTTGGCTTCTGGTTTTGTTCTATGTGTTGGGGAACACAGTTGTTAAAATTGTCCCCTACAATGCTGGGGTAACTCTGCTTTCTCTTGGCAATGGAGCCCCTGTTGTGTTTTCCAGTCTTGTTTCGTCTATGGGTGGCGGGACGGGCGAAATTGGTCTTAATATAGTTTTGGGCGGTGCTTCCTTTGTGTCGTGTGCTGTGTTCACAAATCGGACTTTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006810 GO:0006811 GO:0006812 GO:0008150 GO:0051179 GO:0051234
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Na_Ca_ex

Protein Analysis

184

Amino Acids

19.9

Weight (kDa)

8.67

Isoelectric Point (pI)

39.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 5
AccB1I GGYRCC 1 cut(s) 5
AciI CCGC 2 cut(s) 468, 504
AcuI CTGAAG 1 cut(s) 90
AfaI GTAC 3 cut(s) 7, 29, 93
AfiI CCNNNNNNNGG 1 cut(s) 311
AgsI TTSAA 1 cut(s) 52
AluBI AGCT 1 cut(s) 212
AluI AGCT 1 cut(s) 212
Alw26I GTCTC 2 cut(s) 66, 253
ArsI GACNNNNNNTTYG 2 cut(s) 24, 56
Asp700I GAANNNNTTC 1 cut(s) 127
Asp718I GGTACC 1 cut(s) 5
AspLEI GCGC 1 cut(s) 80
AsuII TTCGAA 1 cut(s) 121
BaeI ACNNNNGTAYC 1 cut(s) 30
BanI GGYRCC 1 cut(s) 5
BanII GRGCYC 1 cut(s) 430
BcoDI GTCTC 2 cut(s) 66, 253
BfaI CTAG 1 cut(s) 173
BmiI GGNNCC 2 cut(s) 7, 427
BmsI GCATC 1 cut(s) 65
Bpu14I TTCGAA 1 cut(s) 121
BsaJI CCNNGG 1 cut(s) 253
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 1 cut(s) 311
Bse1I ACTGG 1 cut(s) 444
Bse3DI GCAATG 1 cut(s) 427
BseDI CCNNGG 1 cut(s) 253
BseGI GGATG 1 cut(s) 80
BseLI CCNNNNNNNGG 1 cut(s) 311
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 123
BseNI ACTGG 1 cut(s) 444
BseYI CCCAGC 1 cut(s) 395
BshNI GGYRCC 1 cut(s) 5
BslFI GGGAC 2 cut(s) 368, 484
BslI CCNNNNNNNGG 1 cut(s) 311
BsmAI GTCTC 2 cut(s) 66, 253
BsmBI CGTCTC 1 cut(s) 66
BsmFI GGGAC 2 cut(s) 368, 484
Bsp119I TTCGAA 1 cut(s) 121
Bsp1286I GDGCHC 1 cut(s) 430
Bsp1407I TGTACA 1 cut(s) 91
BspACI CCGC 2 cut(s) 468, 504
BspCNI CTCAG 1 cut(s) 124
BspLI GGNNCC 2 cut(s) 7, 427
BspT104I TTCGAA 1 cut(s) 121
BspT107I GGYRCC 1 cut(s) 5
BsrDI GCAATG 1 cut(s) 427
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 1 cut(s) 444
BssECI CCNNGG 1 cut(s) 253
BssT1I CCWWGG 1 cut(s) 253
Bst4CI ACNGT 1 cut(s) 370
BstAUI TGTACA 1 cut(s) 91
BstBI TTCGAA 1 cut(s) 121
BstDEI CTNAG 3 cut(s) 10, 132, 213
BstF5I GGATG 1 cut(s) 80
BstHHI GCGC 1 cut(s) 80
BstMAI GTCTC 2 cut(s) 66, 253
BstMWI GCNNNNNNNGC 1 cut(s) 474
BtsCI GGATG 1 cut(s) 80
CfoI GCGC 1 cut(s) 80
Csp6I GTAC 3 cut(s) 6, 28, 92
CviJI RGCY 4 cut(s) 212, 258, 337, 428
CviKI_1 RGCY 4 cut(s) 212, 258, 337, 428
CviQI GTAC 3 cut(s) 6, 28, 92
DdeI CTNAG 3 cut(s) 10, 132, 213
Eco130I CCWWGG 1 cut(s) 253
Eco24I GRGCYC 1 cut(s) 430
Eco57I CTGAAG 1 cut(s) 90
EcoT14I CCWWGG 1 cut(s) 253
EcoT38I GRGCYC 1 cut(s) 430
ErhI CCWWGG 1 cut(s) 253
Esp3I CGTCTC 1 cut(s) 66
FaiI YATR 6 cut(s) 102, 261, 263, 354, 461, 494
FaqI GGGAC 2 cut(s) 368, 484
FauI CCCGC 1 cut(s) 461
FokI GGATG 1 cut(s) 87
FriOI GRGCYC 1 cut(s) 430
FspBI CTAG 1 cut(s) 173
GlaI GCGC 1 cut(s) 79
GsaI CCCAGC 1 cut(s) 399
HhaI GCGC 1 cut(s) 80
Hin6I GCGC 1 cut(s) 78
HinP1I GCGC 1 cut(s) 78
HinfI GANTC 1 cut(s) 167
Hpy166II GTNNAC 1 cut(s) 534
Hpy188I TCNGA 4 cut(s) 109, 133, 166, 543
Hpy188III TCNNGA 2 cut(s) 49, 156
Hpy8I GTNNAC 1 cut(s) 534
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 2 cut(s) 180, 288
HpyF10VI GCNNNNNNNGC 1 cut(s) 474
HpyF3I CTNAG 3 cut(s) 10, 132, 213
HpySE526I ACGT 1 cut(s) 39
HspAI GCGC 1 cut(s) 78
KpnI GGTACC 1 cut(s) 9
LmnI GCTCC 1 cut(s) 425
LpnPI CCDG 6 cut(s) 132, 169, 326, 381, 444, 457
LweI GCATC 1 cut(s) 65
MaeI CTAG 1 cut(s) 173
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 1 cut(s) 400
MfeI CAATTG 1 cut(s) 308
MhlI GDGCHC 1 cut(s) 430
MluCI AATT 5 cut(s) 34, 289, 308, 378, 480
MmeI TCCRAC 1 cut(s) 258
MnlI CCTC 1 cut(s) 315
MroXI GAANNNNTTC 1 cut(s) 127
MseI TTAA 4 cut(s) 228, 273, 375, 489
MslI CAYNNNNRTG 1 cut(s) 99
MunI CAATTG 1 cut(s) 308
MwoI GCNNNNNNNGC 1 cut(s) 474
NlaIV GGNNCC 2 cut(s) 7, 427
NspV TTCGAA 1 cut(s) 121
PdmI GAANNNNTTC 1 cut(s) 127
PfeI GAWTC 1 cut(s) 167
PspFI CCCAGC 1 cut(s) 395
PspN4I GGNNCC 2 cut(s) 7, 427
RsaI GTAC 3 cut(s) 7, 29, 93
RsaNI GTAC 3 cut(s) 6, 28, 92
RseI CAYNNNNRTG 1 cut(s) 99
SaqAI TTAA 4 cut(s) 228, 273, 375, 489
SduI GDGCHC 1 cut(s) 430
SetI ASST 5 cut(s) 11, 42, 214, 228, 273
SfaNI GCATC 1 cut(s) 65
SfuI TTCGAA 1 cut(s) 121
SmiMI CAYNNNNRTG 1 cut(s) 99
Sse9I AATT 5 cut(s) 34, 289, 308, 378, 480
SsiI CCGC 2 cut(s) 468, 504
SspMI CTAG 1 cut(s) 173
StyI CCWWGG 1 cut(s) 253
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 1 cut(s) 42
TaqI TCGA 1 cut(s) 121
TasI AATT 5 cut(s) 34, 289, 308, 378, 480
TatI WGTACW 2 cut(s) 27, 91
TfiI GAWTC 1 cut(s) 167
Tru1I TTAA 4 cut(s) 228, 273, 375, 489
Tru9I TTAA 4 cut(s) 228, 273, 375, 489
XmnI GAANNNNTTC 1 cut(s) 127
XspI CTAG 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.