pycom14g00830

Xylosyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0009545
Physical Location & Seq
Forward (+)
551590 .. 556024
4435 bp
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UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 714 bp
ATGCTGATACATACTTTTTCTGATTTACCAAGAGATCTCAATTTCATACATCACACTAGTCGCTTGGGTTGGAAGCTGAATAAGAGAGGGAAGCCAATGGTAATAGACCCAGGACTGTACAGCCTGAATAAATCAGAGTTGTGGTGGGTTATCAAACAAAGGGCTCTCCCAACTGCTTTCAAGCTTTACACAGGTTCAGCTTGGACAATTTTATCAAGATCTTTTGCCGAGTATTGCGTCGTAGGGTGGGACAATCTGCCAAGGACTCTCCTCCTCTACTACACCAACTTTGTCTCGTCACCGGAAGGCTACTTCCAGACAGTAATATGCAACTCCGAAGACTACAAGAACACCACCGTCAATCACGACCTTCATTTCATTACATGGGATACACCTCCGAAGCAGCATCCGAGGTCTCTTGGACTGAGAGATTTCAGAAGAATGATTCTGAGCAACCGTCCATTTGCTAGAAAGTTCAAGAAAAATGCCCCTGTTCTAAACAAAATTGATCGCGACCTTCTTAAACGACATCGCGGACAATTTGCTTACGGGGGATGGTGTTCTGGGAGTAATGGGAAGACGCAAAAGGTATGCTCGAGTTTGCAGAGAGAAAACTATGGCGTTTTAAGACCGGGATCGGGGTCTAGGAGGTTGAAATCTTTGTTAATGAAACTCCTCTCCACAAGGAACTTCAAGAAACAACAATGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Branch

Protein Analysis

238

Amino Acids

27.66

Weight (kDa)

10.31

Isoelectric Point (pI)

36.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Branch PF02485 2 - 148 3.5e-39 Core-2/I-Branching enzyme
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 513, 534
AciI CCGC 1 cut(s) 534
AclWI GGATC 1 cut(s) 643
AfaI GTAC 1 cut(s) 119
AfiI CCNNNNNNNGG 1 cut(s) 638
AgsI TTSAA 4 cut(s) 181, 478, 655, 694
AhlI ACTAGT 1 cut(s) 56
AjnI CCWGG 1 cut(s) 109
AluBI AGCT 3 cut(s) 76, 184, 200
AluI AGCT 3 cut(s) 76, 184, 200
Alw26I GTCTC 2 cut(s) 298, 420
AlwI GGATC 1 cut(s) 643
Ama87I CYCGRG 1 cut(s) 595
ApeKI GCWGC 1 cut(s) 403
AsuC2I CCSGG 1 cut(s) 633
AsuHPI GGTGA 1 cut(s) 291
AvaI CYCGRG 1 cut(s) 595
BanII GRGCYC 1 cut(s) 166
BbsI GAAGAC 2 cut(s) 345, 584
BbvI GCAGC 1 cut(s) 415
BccI CCATC 1 cut(s) 549
BciT130I CCWGG 1 cut(s) 111
BciVI GTATCC 1 cut(s) 382
BcnI CCSGG 1 cut(s) 633
BcoDI GTCTC 2 cut(s) 298, 420
BcuI ACTAGT 1 cut(s) 56
BfaI CTAG 3 cut(s) 57, 468, 645
BfuI GTATCC 1 cut(s) 382
BglII AGATCT 2 cut(s) 34, 218
BisI GCNGC 1 cut(s) 404
BlsI GCNGC 1 cut(s) 405
Bme1390I CCNGG 2 cut(s) 111, 633
BmeT110I CYCGRG 1 cut(s) 595
BmrFI CCNGG 2 cut(s) 111, 633
BmsI GCATC 1 cut(s) 415
BpiI GAAGAC 2 cut(s) 345, 584
BpuMI CCSGG 1 cut(s) 633
BsaI GGTCTC 1 cut(s) 420
BsaJI CCNNGG 3 cut(s) 109, 260, 410
BsaWI WCCGGW 1 cut(s) 301
Bsc4I CCNNNNNNNGG 1 cut(s) 638
BseBI CCWGG 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 109, 260, 410
BseGI GGATG 2 cut(s) 406, 560
BseLI CCNNNNNNNGG 1 cut(s) 638
BseMII CTCAG 2 cut(s) 416, 440
BseRI GAGGAG 3 cut(s) 260, 263, 665
BseXI GCAGC 1 cut(s) 415
Bsh1236I CGCG 2 cut(s) 513, 534
BsiHKCI CYCGRG 1 cut(s) 595
BsiSI CCGG 2 cut(s) 302, 632
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 1 cut(s) 638
BsmAI GTCTC 2 cut(s) 298, 420
BsmFI GGGAC 1 cut(s) 263
Bso31I GGTCTC 1 cut(s) 420
BsoBI CYCGRG 1 cut(s) 595
Bsp1286I GDGCHC 1 cut(s) 166
Bsp1407I TGTACA 1 cut(s) 117
Bsp143I GATC 4 cut(s) 34, 218, 508, 635
Bsp68I TCGCGA 1 cut(s) 513
BspACI CCGC 1 cut(s) 534
BspCNI CTCAG 2 cut(s) 417, 441
BspFNI CGCG 2 cut(s) 513, 534
BspPI GGATC 1 cut(s) 643
BspTNI GGTCTC 1 cut(s) 420
BsrGI TGTACA 1 cut(s) 117
BssECI CCNNGG 3 cut(s) 109, 260, 410
BssMI GATC 4 cut(s) 34, 218, 508, 635
BssT1I CCWWGG 1 cut(s) 260
Bst2UI CCWGG 1 cut(s) 111
Bst4CI ACNGT 4 cut(s) 117, 322, 358, 458
BstAUI TGTACA 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 425, 449
BstF5I GGATG 2 cut(s) 406, 560
BstFNI CGCG 2 cut(s) 513, 534
BstKTI GATC 4 cut(s) 37, 221, 511, 638
BstMAI GTCTC 2 cut(s) 298, 420
BstMBI GATC 4 cut(s) 34, 218, 508, 635
BstNI CCWGG 1 cut(s) 111
BstSCI CCNGG 2 cut(s) 109, 631
BstUI CGCG 2 cut(s) 513, 534
BstV1I GCAGC 1 cut(s) 415
BstV2I GAAGAC 2 cut(s) 345, 584
BstX2I RGATCY 2 cut(s) 34, 218
BstYI RGATCY 2 cut(s) 34, 218
BsuI GTATCC 1 cut(s) 382
BtgZI GCGATG 1 cut(s) 515
BtsCI GGATG 2 cut(s) 406, 560
BtuMI TCGCGA 1 cut(s) 513
CseI GACGC 2 cut(s) 226, 589
Csp6I GTAC 1 cut(s) 118
CviAII CATG 1 cut(s) 384
CviJI RGCY 7 cut(s) 76, 94, 123, 164, 184, 200, 309
CviKI_1 RGCY 7 cut(s) 76, 94, 123, 164, 184, 200, 309
CviQI GTAC 1 cut(s) 118
DdeI CTNAG 2 cut(s) 425, 449
DpnI GATC 4 cut(s) 36, 220, 510, 637
DpnII GATC 4 cut(s) 34, 218, 508, 635
Eco130I CCWWGG 1 cut(s) 260
Eco24I GRGCYC 1 cut(s) 166
Eco31I GGTCTC 1 cut(s) 420
Eco88I CYCGRG 1 cut(s) 595
EcoRII CCWGG 1 cut(s) 109
EcoT14I CCWWGG 1 cut(s) 260
EcoT38I GRGCYC 1 cut(s) 166
ErhI CCWWGG 1 cut(s) 260
FaeI CATG 1 cut(s) 387
FaiI YATR 6 cut(s) 12, 47, 328, 385, 592, 618
FaqI GGGAC 1 cut(s) 263
FatI CATG 1 cut(s) 383
Fnu4HI GCNGC 1 cut(s) 404
FokI GGATG 2 cut(s) 393, 567
FriOI GRGCYC 1 cut(s) 166
Fsp4HI GCNGC 1 cut(s) 404
FspBI CTAG 3 cut(s) 57, 468, 645
GluI GCNGC 1 cut(s) 404
HapII CCGG 2 cut(s) 302, 632
HgaI GACGC 2 cut(s) 226, 589
Hin1II CATG 1 cut(s) 387
HindIII AAGCTT 1 cut(s) 182
HinfI GANTC 2 cut(s) 265, 445
HpaII CCGG 2 cut(s) 302, 632
HphI GGTGA 1 cut(s) 291
Hpy188I TCNGA 7 cut(s) 22, 136, 337, 399, 411, 437, 450
Hpy188III TCNNGA 6 cut(s) 216, 316, 365, 478, 512, 694
Hpy99I CGWCG 1 cut(s) 242
HpyAV CCTTC 3 cut(s) 299, 380, 527
HpyCH4III ACNGT 4 cut(s) 117, 322, 358, 458
HpyCH4V TGCA 3 cut(s) 330, 604, 708
HpyF3I CTNAG 2 cut(s) 425, 449
Hsp92II CATG 1 cut(s) 387
Kzo9I GATC 4 cut(s) 34, 218, 508, 635
LpnPI CCDG 9 cut(s) 96, 123, 137, 177, 315, 329, 504, 549, 645
Lsp1109I GCAGC 1 cut(s) 415
LweI GCATC 1 cut(s) 415
MaeI CTAG 3 cut(s) 57, 468, 645
MaeIII GTNAC 1 cut(s) 297
MalI GATC 4 cut(s) 36, 220, 510, 637
MboI GATC 4 cut(s) 34, 218, 508, 635
MboII GAAGA 3 cut(s) 350, 450, 589
MflI RGATCY 2 cut(s) 34, 218
MhlI GDGCHC 1 cut(s) 166
MluCI AATT 4 cut(s) 40, 207, 504, 539
MlyI GAGTC 1 cut(s) 259
MmeI TCCRAC 1 cut(s) 50
MnlI CCTC 7 cut(s) 80, 281, 284, 405, 405, 642, 686
MseI TTAA 3 cut(s) 522, 626, 665
MspI CCGG 2 cut(s) 302, 632
MspR9I CCNGG 2 cut(s) 111, 633
MvaI CCWGG 1 cut(s) 111
MvnI CGCG 2 cut(s) 513, 534
NciI CCSGG 1 cut(s) 633
NdeII GATC 4 cut(s) 34, 218, 508, 635
NlaIII CATG 1 cut(s) 387
NmeAIII GCCGAG 1 cut(s) 253
NmuCI GTSAC 1 cut(s) 297
NruI TCGCGA 1 cut(s) 513
PaeR7I CTCGAG 1 cut(s) 595
PfeI GAWTC 1 cut(s) 445
PkrI GCNGC 1 cut(s) 405
PleI GAGTC 1 cut(s) 259
PpsI GAGTC 1 cut(s) 259
Psp6I CCWGG 1 cut(s) 109
PspGI CCWGG 1 cut(s) 109
PspXI VCTCGAGB 1 cut(s) 595
PsuI RGATCY 2 cut(s) 34, 218
RruI TCGCGA 1 cut(s) 513
RsaI GTAC 1 cut(s) 119
RsaNI GTAC 1 cut(s) 118
SaqAI TTAA 3 cut(s) 522, 626, 665
SatI GCNGC 1 cut(s) 404
Sau3AI GATC 4 cut(s) 34, 218, 508, 635
SchI GAGTC 1 cut(s) 259
ScrFI CCNGG 2 cut(s) 111, 633
SduI GDGCHC 1 cut(s) 166
SfaNI GCATC 1 cut(s) 415
Sfr274I CTCGAG 1 cut(s) 595
SlaI CTCGAG 1 cut(s) 595
SmlI CTYRAG 1 cut(s) 595
SmoI CTYRAG 1 cut(s) 595
SpeI ACTAGT 1 cut(s) 56
Sse9I AATT 4 cut(s) 40, 207, 504, 539
SsiI CCGC 1 cut(s) 534
SspMI CTAG 3 cut(s) 57, 468, 645
StyD4I CCNGG 2 cut(s) 109, 631
StyI CCWWGG 1 cut(s) 260
TaaI ACNGT 4 cut(s) 117, 322, 358, 458
TaqI TCGA 1 cut(s) 596
TasI AATT 4 cut(s) 40, 207, 504, 539
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 445
Tru1I TTAA 3 cut(s) 522, 626, 665
Tru9I TTAA 3 cut(s) 522, 626, 665
TseFI GTSAC 1 cut(s) 297
TseI GCWGC 1 cut(s) 403
Tsp45I GTSAC 1 cut(s) 297
TspDTI ATGAA 4 cut(s) 34, 362, 367, 683
XhoI CTCGAG 1 cut(s) 595
XspI CTAG 3 cut(s) 57, 468, 645
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.