Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005773

Physical Location & Seq

Genomic Coordinates Reverse (-)

1307261 .. 1310870

Gene Structure 3610 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGGTGTGATTGATATATACAACGCTTCCTCACTCCGATTAACCGCCCCCCGCAGACCCAGCTGTGGAAGAATCGAAGGGAATATAAAGAGGGTGAGGGTGGTGGCTATGGCGTCCACAATCCCTGTGCAGCATAAACAAGTCAATGACGGTCAACAGCGTTTGACTGGGGACTCATTCATTCGACCCCATTTGAGGAACTTGTCTCCTTATCAGCCCATTTTGCCATTTGAGGTTTTGTCAACCAGACTTGGAAGGAAGCCTGAGGACATCATCAAGCTAGATGCAAATGAAAACCCTTATGGTCCTCCTCCGGAGGTTTTTGAAGCTTTGGGTGCATTGAAATTCCCGTATATCTATCCTGACCCTGAAAGCCGTCGATTACGTGCTGCCCTTGCAAAGGATTCAGGCCTTGAATCTGATTATATTCTTGTTGGGTGTGGTGCTGATGAGCTCATTGATTTGATTATGAGATGTGTAATCGATCCTGGCGATAAGATTGTTGATTGCCCACCAACGTTCACTATGTATGAATTTGATGCTGCAGTAAACGCTGCTTCCGTCATCAAAGTGCCAAGGAAGTCGGATTTTAGCTTGGATGTAGAAGTCATTTCTGATGTTGTTTTACAGGAAAAACCAAAATGCATATTCCTAACTTCTCCCAACAATCCAGATGGGAGTATAATCAGTGATGAGATTCTCTTGAAAATCCTTGAGCTTCCTATATTGGTCGTGCTGGATGAAGCATATATTGAGTTTTCAGGACTCGAATCGAGGATGCAGTGGGTGAAAAAGCACGAGAATTTAATTGTTCTGCGAACATTTAGCAAACGAGCTGGCTTAGCTGGACTCCGTGTAGGATATGGAGCATTTCCGCTGAGCATAATTGAATATCTGTGGAGAGCTAAGCAACCATATAATGTTTCTGTTACTGCTGAAGTTTCTGCTTGTGCAGCATTGCAGAATCCCACCTATCTTGAGACGGTGAAAGAAGCTTTGCTACGAGAGAGGGAGCGTCTTTTTAACCTCCTAAAGGAGCTCCCGTTTCTCAACCCGTATCCAAGCTATTCCAATTTCATTCTCTGTGAGGTTACATTGGGAATGGATCCTAAGAAGCTGAAGGAGGACCTTGCGAAAATGGGGGTGATGATTCGTCACTACAACAACAAAGAGTTGAAGGGTTATGTTCGCATATCTGTTGGGAAGCCTGAACACACAGATATATTGATCGATTGCCTCAGACGCTTGTCGCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004400 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko00350 ko00360 ko00400 ko00401 ko00960 ko01100 ko01110 ko01130 ko01230 map00340 map00350 map00360 map00400 map00401 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

419

Amino Acids

47.03

Weight (kDa)

6.96

Isoelectric Point (pI)

47.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	90 - 411	2.7e-51	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330
fragaria_vesca	FvH4_7g02740
malus_domestica	MD12G1021300.v1.1
prunus_persica	Prupe.6G194700_v2.0.a1
pyrus_communis	pycom12g02000 pycom14g01770
rosa_chinensis	RchiOBHm_Chr1g0322001
rosa_laevigata	RLG00000030395
rosa_multiflora	Rmu_sc0001168.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327360
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1BG045900 Rh1CG052300 Rh1DG056500
rosa_wichuraiana	Rw1G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	313
AciI	CCGC	3 cut(s)	45, 52, 875
AclI	AACGTT	1 cut(s)	518
AclWI	GGATC	3 cut(s)	479, 1100, 1113
AcsI	RAATTY	3 cut(s)	344, 533, 802
AcuI	CTGAAG	2 cut(s)	957, 1139
AcyI	GRCGYC	1 cut(s)	113
AfiI	CCNNNNNNNGG	4 cut(s)	65, 195, 400, 1033
AgsI	TTSAA	6 cut(s)	326, 343, 416, 706, 890, 1177
AjnI	CCWGG	1 cut(s)	487
Alw21I	GWGCWC	2 cut(s)	456, 1041
Alw26I	GTCTC	2 cut(s)	210, 974
AlwI	GGATC	3 cut(s)	479, 1100, 1113
Aor13HI	TCCGGA	1 cut(s)	313
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	5 cut(s)	130, 389, 542, 554, 953
ApoI	RAATTY	3 cut(s)	344, 533, 802
AspS9I	GGNCC	2 cut(s)	305, 1126
AsuHPI	GGTGA	4 cut(s)	106, 799, 997, 1156
AvaII	GGWCC	2 cut(s)	305, 1126
AxyI	CCTNAGG	1 cut(s)	264
BamHI	GGATCC	1 cut(s)	1105
BanII	GRGCYC	2 cut(s)	456, 1041
BarI	GAAGNNNNNNTAC	2 cut(s)	984, 1016
BauI	CACGAG	1 cut(s)	797
Bbv12I	GWGCWC	2 cut(s)	456, 1041
BbvI	GCAGC	5 cut(s)	142, 376, 529, 541, 965
BccI	CCATC	1 cut(s)	668
BceAI	ACGGC	1 cut(s)	360
BciT130I	CCWGG	1 cut(s)	489
BciVI	GTATCC	1 cut(s)	1068
BcoDI	GTCTC	2 cut(s)	210, 974
BfaI	CTAG	1 cut(s)	281
BfmI	CTRYAG	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	1068
BisI	GCNGC	5 cut(s)	131, 390, 543, 555, 954
BlpI	GCTNAGC	3 cut(s)	841, 878, 906
BlsI	GCNGC	5 cut(s)	132, 391, 544, 556, 955
Bme1390I	CCNGG	1 cut(s)	489
Bme18I	GGWCC	2 cut(s)	305, 1126
BmgT120I	GGNCC	2 cut(s)	305, 1126
BmiI	GGNNCC	1 cut(s)	1107
BmrFI	CCNGG	1 cut(s)	489
BmrI	ACTGGG	1 cut(s)	177
BmsI	GCATC	3 cut(s)	274, 529, 768
BmuI	ACTGGG	1 cut(s)	177
BoxI	GACNNNNGTC	1 cut(s)	1246
Bpu1102I	GCTNAGC	3 cut(s)	841, 878, 906
BpuEI	CTTGAG	2 cut(s)	734, 998
Bsa29I	ATCGAT	2 cut(s)	483, 1230
BsaAI	YACGTR	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	575
BsaWI	WCCGGW	1 cut(s)	313
BsaXI	ACNNNNNCTCC	2 cut(s)	1028, 1058
Bsc4I	CCNNNNNNNGG	4 cut(s)	65, 195, 400, 1033
Bse1I	ACTGG	1 cut(s)	172
Bse21I	CCTNAGG	1 cut(s)	264
Bse3DI	GCAATG	1 cut(s)	956
BseAI	TCCGGA	1 cut(s)	313
BseBI	CCWGG	1 cut(s)	489
BseCI	ATCGAT	2 cut(s)	483, 1230
BseDI	CCNNGG	1 cut(s)	575
BseGI	GGATG	3 cut(s)	604, 745, 783
BseLI	CCNNNNNNNGG	4 cut(s)	65, 195, 400, 1033
BseMI	GCAATG	1 cut(s)	956
BseMII	CTCAG	3 cut(s)	255, 869, 1252
BseNI	ACTGG	1 cut(s)	172
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	5 cut(s)	142, 376, 529, 541, 965
BseYI	CCCAGC	1 cut(s)	59
BsgI	GTGCAG	2 cut(s)	149, 972
BshFI	GGCC	1 cut(s)	411
BshVI	ATCGAT	2 cut(s)	483, 1230
BsiHKAI	GWGCWC	2 cut(s)	456, 1041
BsiSI	CCGG	1 cut(s)	314
BslFI	GGGAC	1 cut(s)	185
BslI	CCNNNNNNNGG	4 cut(s)	65, 195, 400, 1033
BsmAI	GTCTC	2 cut(s)	210, 974
BsmBI	CGTCTC	1 cut(s)	974
BsmFI	GGGAC	1 cut(s)	185
BsnI	GGCC	1 cut(s)	411
Bsp1286I	GDGCHC	2 cut(s)	456, 1041
Bsp13I	TCCGGA	1 cut(s)	313
Bsp143I	GATC	3 cut(s)	484, 1105, 1227
Bsp1720I	GCTNAGC	3 cut(s)	841, 878, 906
BspACI	CCGC	3 cut(s)	45, 52, 875
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	3 cut(s)	256, 870, 1251
BspDI	ATCGAT	2 cut(s)	483, 1230
BspEI	TCCGGA	1 cut(s)	313
BspLI	GGNNCC	1 cut(s)	1107
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	3 cut(s)	479, 1100, 1113
BsrDI	GCAATG	1 cut(s)	956
BsrI	ACTGG	1 cut(s)	172
BssECI	CCNNGG	1 cut(s)	575
BssMI	GATC	3 cut(s)	484, 1105, 1227
BssNI	GRCGYC	1 cut(s)	113
BssSI	CACGAG	1 cut(s)	797
BssT1I	CCWWGG	1 cut(s)	575
Bst2BI	CACGAG	1 cut(s)	797
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	2 cut(s)	152, 985
BstACI	GRCGYC	1 cut(s)	113
BstBAI	YACGTR	1 cut(s)	386
BstC8I	GCNNGC	1 cut(s)	838
BstDEI	CTNAG	6 cut(s)	264, 841, 878, 906, 1110, 1238
BstENI	CCTNNNNNAGG	2 cut(s)	398, 1031
BstF5I	GGATG	3 cut(s)	604, 745, 783
BstKTI	GATC	3 cut(s)	487, 1108, 1230
BstMAI	GTCTC	2 cut(s)	210, 974
BstMBI	GATC	3 cut(s)	484, 1105, 1227
BstMWI	GCNNNNNNNGC	8 cut(s)	60, 223, 335, 395, 551, 842, 953, 1242
BstNI	CCWGG	1 cut(s)	489
BstPAI	GACNNNNGTC	1 cut(s)	1246
BstSCI	CCNGG	1 cut(s)	487
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	5 cut(s)	142, 376, 529, 541, 965
BstX2I	RGATCY	1 cut(s)	1105
BstYI	RGATCY	1 cut(s)	1105
Bsu15I	ATCGAT	2 cut(s)	483, 1230
Bsu36I	CCTNAGG	1 cut(s)	264
BsuI	GTATCC	1 cut(s)	1068
BsuRI	GGCC	1 cut(s)	411
BsuTUI	ATCGAT	2 cut(s)	483, 1230
BtsCI	GGATG	3 cut(s)	604, 745, 783
BtsI	GCAGTG	1 cut(s)	788
BtsIMutI	CAGTG	2 cut(s)	694, 788
Cac8I	GCNNGC	1 cut(s)	838
Cfr13I	GGNCC	2 cut(s)	305, 1126
ClaI	ATCGAT	2 cut(s)	483, 1230
CseI	GACGC	3 cut(s)	102, 1004, 1251
CspCI	CAANNNNNGTGG	2 cut(s)	958, 993
DdeI	CTNAG	6 cut(s)	264, 841, 878, 906, 1110, 1238
DpnI	GATC	3 cut(s)	486, 1107, 1229
DpnII	GATC	3 cut(s)	484, 1105, 1227
Ecl136II	GAGCTC	2 cut(s)	454, 1039
Eco130I	CCWWGG	1 cut(s)	575
Eco147I	AGGCCT	1 cut(s)	411
Eco24I	GRGCYC	2 cut(s)	456, 1041
Eco47I	GGWCC	2 cut(s)	305, 1126
Eco53kI	GAGCTC	2 cut(s)	454, 1039
Eco57I	CTGAAG	2 cut(s)	957, 1139
Eco81I	CCTNAGG	1 cut(s)	264
EcoICRI	GAGCTC	2 cut(s)	454, 1039
EcoNI	CCTNNNNNAGG	2 cut(s)	398, 1031
EcoO109I	RGGNCCY	1 cut(s)	1126
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	575
EcoT22I	ATGCAT	1 cut(s)	647
EcoT38I	GRGCYC	2 cut(s)	456, 1041
ErhI	CCWWGG	1 cut(s)	575
Esp3I	CGTCTC	1 cut(s)	974
FaqI	GGGAC	1 cut(s)	185
FauI	CCCGC	1 cut(s)	59
Fnu4HI	GCNGC	5 cut(s)	131, 390, 543, 555, 954
FokI	GGATG	3 cut(s)	611, 752, 790
FriOI	GRGCYC	2 cut(s)	456, 1041
Fsp4HI	GCNGC	5 cut(s)	131, 390, 543, 555, 954
FspBI	CTAG	1 cut(s)	281
GluI	GCNGC	5 cut(s)	131, 390, 543, 555, 954
GsaI	CCCAGC	1 cut(s)	63
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	1 cut(s)	314
HgaI	GACGC	3 cut(s)	102, 1004, 1251
Hin1I	GRCGYC	1 cut(s)	113
HincII	GTYRAC	2 cut(s)	155, 243
HindII	GTYRAC	2 cut(s)	155, 243
HindIII	AAGCTT	2 cut(s)	327, 993
HpaII	CCGG	1 cut(s)	314
HphI	GGTGA	4 cut(s)	106, 799, 997, 1156
Hpy166II	GTNNAC	5 cut(s)	117, 155, 243, 522, 550
Hpy188I	TCNGA	5 cut(s)	38, 421, 586, 616, 1241
Hpy188III	TCNNGA	6 cut(s)	314, 362, 671, 703, 762, 977
Hpy8I	GTNNAC	5 cut(s)	117, 155, 243, 522, 550
Hpy99I	CGWCG	1 cut(s)	381
HpyAV	CCTTC	4 cut(s)	71, 249, 1114, 1171
HpyCH4III	ACNGT	2 cut(s)	152, 985
HpyCH4IV	ACGT	2 cut(s)	385, 518
HpyCH4V	TGCA	9 cut(s)	130, 287, 338, 398, 545, 645, 781, 953, 961
HpyF10VI	GCNNNNNNNGC	8 cut(s)	60, 223, 335, 395, 551, 842, 953, 1242
HpyF3I	CTNAG	6 cut(s)	264, 841, 878, 906, 1110, 1238
HpySE526I	ACGT	2 cut(s)	385, 518
Hsp92I	GRCGYC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	313
Kzo9I	GATC	3 cut(s)	484, 1105, 1227
LmnI	GCTCC	4 cut(s)	866, 1012, 1036, 1044
Lsp1109I	GCAGC	5 cut(s)	142, 376, 529, 541, 965
LweI	GCATC	3 cut(s)	274, 529, 768
MaeI	CTAG	1 cut(s)	281
MaeII	ACGT	2 cut(s)	385, 518
MaeIII	GTNAC	3 cut(s)	928, 1090, 1154
MalI	GATC	3 cut(s)	486, 1107, 1229
MboI	GATC	3 cut(s)	484, 1105, 1227
MboII	GAAGA	1 cut(s)	81
MflI	RGATCY	1 cut(s)	1105
MhlI	GDGCHC	2 cut(s)	456, 1041
MluCI	AATT	6 cut(s)	344, 533, 802, 807, 885, 1072
MlyI	GAGTC	3 cut(s)	167, 759, 843
MmeI	TCCRAC	1 cut(s)	564
Mph1103I	ATGCAT	1 cut(s)	647
MroI	TCCGGA	1 cut(s)	313
MseI	TTAA	4 cut(s)	41, 806, 1023, 1255
MslI	CAYNNNNRTG	1 cut(s)	569
MspA1I	CMGCKG	2 cut(s)	63, 877
MspI	CCGG	1 cut(s)	314
MspR9I	CCNGG	1 cut(s)	489
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	8 cut(s)	60, 223, 335, 395, 551, 842, 953, 1242
NdeII	GATC	3 cut(s)	484, 1105, 1227
NlaIV	GGNNCC	1 cut(s)	1107
NmuCI	GTSAC	1 cut(s)	1154
NsiI	ATGCAT	1 cut(s)	647
PceI	AGGCCT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	2 cut(s)	489, 558
PfeI	GAWTC	7 cut(s)	72, 404, 416, 697, 770, 964, 1150
PkrI	GCNGC	5 cut(s)	132, 391, 544, 556, 955
PleI	GAGTC	3 cut(s)	167, 759, 843
PpsI	GAGTC	3 cut(s)	167, 759, 843
Ppu21I	YACGTR	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	1126
PshAI	GACNNNNGTC	1 cut(s)	1246
Psp124BI	GAGCTC	2 cut(s)	456, 1041
Psp1406I	AACGTT	1 cut(s)	518
Psp5II	RGGWCCY	1 cut(s)	1126
Psp6I	CCWGG	1 cut(s)	487
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	1107
PspPI	GGNCC	2 cut(s)	305, 1126
PspPPI	RGGWCCY	1 cut(s)	1126
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	1105
PvuII	CAGCTG	1 cut(s)	63
RseI	CAYNNNNRTG	1 cut(s)	569
SacI	GAGCTC	2 cut(s)	456, 1041
SaqAI	TTAA	4 cut(s)	41, 806, 1023, 1255
SatI	GCNGC	5 cut(s)	131, 390, 543, 555, 954
Sau3AI	GATC	3 cut(s)	484, 1105, 1227
Sau96I	GGNCC	2 cut(s)	305, 1126
SchI	GAGTC	3 cut(s)	167, 759, 843
ScrFI	CCNGG	1 cut(s)	489
SduI	GDGCHC	2 cut(s)	456, 1041
SfaNI	GCATC	3 cut(s)	274, 529, 768
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	2 cut(s)	305, 1126
SmiMI	CAYNNNNRTG	1 cut(s)	569
SmlI	CTYRAG	2 cut(s)	713, 977
SmoI	CTYRAG	2 cut(s)	713, 977
Sse9I	AATT	6 cut(s)	344, 533, 802, 807, 885, 1072
SseBI	AGGCCT	1 cut(s)	411
SsiI	CCGC	3 cut(s)	45, 52, 875
SspMI	CTAG	1 cut(s)	281
SstI	GAGCTC	2 cut(s)	456, 1041
StuI	AGGCCT	1 cut(s)	411
StyD4I	CCNGG	1 cut(s)	487
StyI	CCWWGG	1 cut(s)	575
TaaI	ACNGT	2 cut(s)	152, 985
TaiI	ACGT	2 cut(s)	388, 521
TaqI	TCGA	7 cut(s)	75, 184, 379, 483, 768, 773, 1230
TasI	AATT	6 cut(s)	344, 533, 802, 807, 885, 1072
TfiI	GAWTC	7 cut(s)	72, 404, 416, 697, 770, 964, 1150
Tru1I	TTAA	4 cut(s)	41, 806, 1023, 1255
Tru9I	TTAA	4 cut(s)	41, 806, 1023, 1255
TscAI	CASTG	2 cut(s)	694, 788
TseFI	GTSAC	1 cut(s)	1154
TseI	GCWGC	5 cut(s)	130, 389, 542, 554, 953
Tsp45I	GTSAC	1 cut(s)	1154
TspDTI	ATGAA	5 cut(s)	169, 306, 546, 756, 1066
TspGWI	ACGGA	2 cut(s)	550, 842
TspRI	CASTG	2 cut(s)	694, 788
VpaK11BI	GGWCC	2 cut(s)	305, 1126
XagI	CCTNNNNNAGG	2 cut(s)	398, 1031
XapI	RAATTY	3 cut(s)	344, 533, 802
XspI	CTAG	1 cut(s)	281
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.