Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007912

Physical Location & Seq

Genomic Coordinates Reverse (-)

1659335 .. 1660093

Gene Structure 759 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAGCACCTTCCAGTTGAAGTCATAGGCAACATACTATCCCGGCTTAAAGCTGCCCGAGATGTGGTGATTGCATCTGCGACTTGTAAGAAATGGAGAGAGGCTTGGCGCAATCACCTCCACACTCTTTCTTTTAATTCCAATGATTGGTCCGTCTATCATGATCTGACAACAAGTAGATTGGAAATTCTTATAACTCAAACAATTTTCCAAACTACATCATTGCAGTGTTTATCAATTTTAATGGATGATGTTGATGAATTTTCAGCTGCCCCAGTGATTGCTTGGCTCATGTATACCCGGGATACCTTGCGGCAACTGCATTATAATGTGAGGACTACTCCGATTGTGAATATCATTGAGAAATGCAGTCGGCAGAAGCTTGAAGTCTTGGCATTGGCTTATAATTCTGTAACAGGTGTTGAACCCAGTTATGAGAAATTTCCATGCTTGAAGTCACTTTCACTAAGTTATGTCAGTATCTCAGCATGGGATTTGAGCCTTTTGCTTACCGCATGTCCAAAACTTCAGAATTTGGCTCTTATTAATCCTGATATTGCCATGTCGGATGCACAGGCAACCATGGAACTTAATAGTCCTTCTCTTAAAGATATCTATGTGGAAGCTGTCAGTTTGGATAAGTTCATACTCGAGGCTGATAGCATTGAGAATCTGCACCTGAAAGATTGTACCCTCGAGCTTTTTGAGCTTATTGGTAAGGGGTCACTGAGAGTTTTGAAGATCGATCTTTGTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box F-box-like

Protein Analysis

253

Amino Acids

28.52

Weight (kDa)

5.54

Isoelectric Point (pI)

39.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
F-box-like	PF12937	2 - 36	6.4e-08	F-box-like
F-box	PF00646	2 - 39	8.1e-06	F-box domain
LRR_At5g56370	PF24758	126 - 228	2.4e-12	FBD-associated F-box protein At5g56370, LRR repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007912)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G67190 AT1G67190
fragaria_vesca	FvH4_6g18580
malus_domestica	MD14G1022200.v1.1
prunus_persica	Prupe.6G129400_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1 Prupe.7G111200_v2.0.a1
pyrus_communis	pycom12g02320 pycom14g02120
rosa_chinensis	RchiOBHm_Chr3g0473131
rosa_laevigata	RLG00000024025
rosa_multiflora	Rmu_sc0016115.1_g000003
rosa_roxburghii	Rroxscaffold_6G00408290
rosa_rugosa	Rorug03G0131900
rosa_samantha	Rh3AG183300 Rh3BG209700 Rh3CG206800 Rh3DG206700
rosa_wichuraiana	Rw0G008090 Rw0G014720

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	194, 327, 405
AccB7I	CCANNNNNTGG	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	296
AciI	CCGC	2 cut(s)	313, 513
AcsI	RAATTY	4 cut(s)	186, 260, 440, 532
AcuI	CTGAAG	1 cut(s)	512
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	2 cut(s)	64, 147
AgsI	TTSAA	5 cut(s)	20, 386, 425, 454, 739
AluBI	AGCT	6 cut(s)	53, 269, 382, 626, 700, 709
AluI	AGCT	6 cut(s)	53, 269, 382, 626, 700, 709
Alw21I	GWGCWC	1 cut(s)	9
Ama87I	CYCGRG	4 cut(s)	57, 300, 650, 695
ApeKI	GCWGC	2 cut(s)	53, 269
ApoI	RAATTY	4 cut(s)	186, 260, 440, 532
AseI	ATTAAT	1 cut(s)	546
AspLEI	GCGC	1 cut(s)	111
AspS9I	GGNCC	1 cut(s)	150
AsuC2I	CCSGG	3 cut(s)	43, 301, 302
AsuHPI	GGTGA	2 cut(s)	79, 107
AvaI	CYCGRG	4 cut(s)	57, 300, 650, 695
AvaII	GGWCC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	40, 256
BciVI	GTATCC	1 cut(s)	298
BcnI	CCSGG	3 cut(s)	43, 301, 302
BfuI	GTATCC	1 cut(s)	298
BisI	GCNGC	3 cut(s)	54, 270, 314
BlsI	GCNGC	3 cut(s)	55, 271, 315
Bme1390I	CCNGG	3 cut(s)	43, 301, 302
Bme18I	GGWCC	1 cut(s)	150
BmeT110I	CYCGRG	4 cut(s)	57, 300, 650, 695
BmgT120I	GGNCC	1 cut(s)	150
BmrFI	CCNGG	3 cut(s)	43, 301, 302
BmrI	ACTGGG	2 cut(s)	269, 423
BmsI	GCATC	2 cut(s)	83, 559
BmuI	ACTGGG	2 cut(s)	269, 423
BplI	GAGNNNNNCTC	2 cut(s)	325, 357
BpuMI	CCSGG	3 cut(s)	43, 301, 302
Bsa29I	ATCGAT	1 cut(s)	744
BsaJI	CCNNGG	2 cut(s)	300, 582
Bsc4I	CCNNNNNNNGG	2 cut(s)	64, 147
Bse1I	ACTGG	3 cut(s)	14, 275, 429
Bse3DI	GCAATG	1 cut(s)	221
BseCI	ATCGAT	1 cut(s)	744
BseDI	CCNNGG	2 cut(s)	300, 582
BseGI	GGATG	2 cut(s)	253, 574
BseLI	CCNNNNNNNGG	2 cut(s)	64, 147
BseMI	GCAATG	1 cut(s)	221
BseMII	CTCAG	2 cut(s)	498, 719
BseNI	ACTGG	3 cut(s)	14, 275, 429
BseXI	GCAGC	2 cut(s)	40, 256
BsgI	GTGCAG	1 cut(s)	659
BshVI	ATCGAT	1 cut(s)	744
BsiHKAI	GWGCWC	1 cut(s)	9
BsiHKCI	CYCGRG	4 cut(s)	57, 300, 650, 695
BsiSI	CCGG	2 cut(s)	43, 301
BslI	CCNNNNNNNGG	2 cut(s)	64, 147
BsoBI	CYCGRG	4 cut(s)	57, 300, 650, 695
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	3 cut(s)	163, 741, 745
Bsp19I	CCATGG	1 cut(s)	582
BspACI	CCGC	2 cut(s)	313, 513
BspCNI	CTCAG	2 cut(s)	497, 720
BspDI	ATCGAT	1 cut(s)	744
BspHI	TCATGA	1 cut(s)	160
BsrDI	GCAATG	1 cut(s)	221
BsrI	ACTGG	3 cut(s)	14, 275, 429
BssECI	CCNNGG	2 cut(s)	300, 582
BssMI	GATC	3 cut(s)	163, 741, 745
BssNAI	GTATAC	1 cut(s)	297
BssT1I	CCWWGG	1 cut(s)	582
Bst1107I	GTATAC	1 cut(s)	297
BstDEI	CTNAG	3 cut(s)	467, 484, 728
BstDSI	CCRYGG	1 cut(s)	582
BstF5I	GGATG	2 cut(s)	253, 574
BstHHI	GCGC	1 cut(s)	111
BstKTI	GATC	3 cut(s)	166, 744, 748
BstMBI	GATC	3 cut(s)	163, 741, 745
BstMWI	GCNNNNNNNGC	2 cut(s)	319, 706
BstNSI	RCATGY	1 cut(s)	519
BstSCI	CCNGG	3 cut(s)	41, 299, 300
BstV1I	GCAGC	2 cut(s)	40, 256
BstZ17I	GTATAC	1 cut(s)	297
Bsu15I	ATCGAT	1 cut(s)	744
BsuI	GTATCC	1 cut(s)	298
BsuTUI	ATCGAT	1 cut(s)	744
BtgI	CCRYGG	1 cut(s)	582
BtsCI	GGATG	2 cut(s)	253, 574
BtsI	GCAGTG	1 cut(s)	233
BtsIMutI	CAGTG	3 cut(s)	233, 282, 725
CciI	TCATGA	1 cut(s)	160
CfoI	GCGC	1 cut(s)	111
Cfr13I	GGNCC	1 cut(s)	150
Cfr9I	CCCGGG	1 cut(s)	300
ClaI	ATCGAT	1 cut(s)	744
Csp6I	GTAC	1 cut(s)	690
CviAII	CATG	7 cut(s)	161, 292, 447, 489, 516, 562, 583
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	3 cut(s)	467, 484, 728
DpnI	GATC	3 cut(s)	165, 743, 747
DpnII	GATC	3 cut(s)	163, 741, 745
Eco130I	CCWWGG	1 cut(s)	582
Eco32I	GATATC	1 cut(s)	613
Eco47I	GGWCC	1 cut(s)	150
Eco57I	CTGAAG	1 cut(s)	512
Eco88I	CYCGRG	4 cut(s)	57, 300, 650, 695
EcoRV	GATATC	1 cut(s)	613
EcoT14I	CCWWGG	1 cut(s)	582
ErhI	CCWWGG	1 cut(s)	582
FaeI	CATG	7 cut(s)	164, 295, 450, 492, 519, 565, 586
FatI	CATG	7 cut(s)	160, 291, 446, 488, 515, 561, 582
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	3 cut(s)	54, 270, 314
FokI	GGATG	2 cut(s)	260, 581
Fsp4HI	GCNGC	3 cut(s)	54, 270, 314
GlaI	GCGC	1 cut(s)	110
GluI	GCNGC	3 cut(s)	54, 270, 314
HapII	CCGG	2 cut(s)	43, 301
HhaI	GCGC	1 cut(s)	111
Hin1II	CATG	7 cut(s)	164, 295, 450, 492, 519, 565, 586
Hin6I	GCGC	1 cut(s)	109
HinP1I	GCGC	1 cut(s)	109
HindIII	AAGCTT	1 cut(s)	380
HinfI	GANTC	1 cut(s)	670
HpaII	CCGG	2 cut(s)	43, 301
HphI	GGTGA	2 cut(s)	79, 107
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	4 cut(s)	168, 345, 531, 568
Hpy188III	TCNNGA	2 cut(s)	161, 551
Hpy8I	GTNNAC	1 cut(s)	297
HpyAV	CCTTC	2 cut(s)	20, 609
HpyCH4V	TGCA	6 cut(s)	74, 226, 322, 369, 572, 676
HpyF10VI	GCNNNNNNNGC	2 cut(s)	319, 706
HpyF3I	CTNAG	3 cut(s)	467, 484, 728
Hsp92II	CATG	7 cut(s)	164, 295, 450, 492, 519, 565, 586
HspAI	GCGC	1 cut(s)	109
Kzo9I	GATC	3 cut(s)	163, 741, 745
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	9 cut(s)	27, 56, 288, 314, 402, 442, 560, 564, 692
Lsp1109I	GCAGC	2 cut(s)	40, 256
LweI	GCATC	2 cut(s)	83, 559
MaeIII	GTNAC	3 cut(s)	412, 456, 723
MalI	GATC	3 cut(s)	165, 743, 747
MboI	GATC	3 cut(s)	163, 741, 745
MboII	GAAGA	1 cut(s)	751
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	8 cut(s)	136, 186, 204, 237, 260, 406, 440, 532
MmeI	TCCRAC	1 cut(s)	546
MnlI	CCTC	5 cut(s)	94, 128, 327, 646, 704
MseI	TTAA	6 cut(s)	48, 135, 242, 546, 591, 606
MslI	CAYNNNNRTG	2 cut(s)	226, 327
MspA1I	CMGCKG	1 cut(s)	269
MspI	CCGG	2 cut(s)	43, 301
MspR9I	CCNGG	3 cut(s)	43, 301, 302
MwoI	GCNNNNNNNGC	2 cut(s)	319, 706
NciI	CCSGG	3 cut(s)	43, 301, 302
NcoI	CCATGG	1 cut(s)	582
NdeII	GATC	3 cut(s)	163, 741, 745
NlaIII	CATG	7 cut(s)	164, 295, 450, 492, 519, 565, 586
NmuCI	GTSAC	2 cut(s)	456, 723
NspI	RCATGY	1 cut(s)	519
PaeR7I	CTCGAG	2 cut(s)	650, 695
PagI	TCATGA	1 cut(s)	160
PfeI	GAWTC	1 cut(s)	670
PflMI	CCANNNNNTGG	1 cut(s)	147
PkrI	GCNGC	3 cut(s)	55, 271, 315
PshBI	ATTAAT	1 cut(s)	546
PsiI	TTATAA	3 cut(s)	194, 327, 405
PspPI	GGNCC	1 cut(s)	150
PspXI	VCTCGAGB	2 cut(s)	650, 695
PvuII	CAGCTG	1 cut(s)	269
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
RseI	CAYNNNNRTG	2 cut(s)	226, 327
SaqAI	TTAA	6 cut(s)	48, 135, 242, 546, 591, 606
SatI	GCNGC	3 cut(s)	54, 270, 314
Sau3AI	GATC	3 cut(s)	163, 741, 745
Sau96I	GGNCC	1 cut(s)	150
ScrFI	CCNGG	3 cut(s)	43, 301, 302
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	2 cut(s)	83, 559
Sfr274I	CTCGAG	2 cut(s)	650, 695
SinI	GGWCC	1 cut(s)	150
SlaI	CTCGAG	2 cut(s)	650, 695
SmaI	CCCGGG	1 cut(s)	302
SmiMI	CAYNNNNRTG	2 cut(s)	226, 327
SmlI	CTYRAG	2 cut(s)	650, 695
SmoI	CTYRAG	2 cut(s)	650, 695
Sse9I	AATT	8 cut(s)	136, 186, 204, 237, 260, 406, 440, 532
SsiI	CCGC	2 cut(s)	313, 513
StyD4I	CCNGG	3 cut(s)	41, 299, 300
StyI	CCWWGG	1 cut(s)	582
TaqI	TCGA	3 cut(s)	651, 696, 744
TasI	AATT	8 cut(s)	136, 186, 204, 237, 260, 406, 440, 532
TauI	GCSGC	1 cut(s)	316
TfiI	GAWTC	1 cut(s)	670
Tru1I	TTAA	6 cut(s)	48, 135, 242, 546, 591, 606
Tru9I	TTAA	6 cut(s)	48, 135, 242, 546, 591, 606
TscAI	CASTG	3 cut(s)	233, 282, 732
TseFI	GTSAC	2 cut(s)	456, 723
TseI	GCWGC	2 cut(s)	53, 269
Tsp45I	GTSAC	2 cut(s)	456, 723
TspDTI	ATGAA	2 cut(s)	273, 634
TspGWI	ACGGA	1 cut(s)	142
TspMI	CCCGGG	1 cut(s)	300
TspRI	CASTG	3 cut(s)	233, 282, 732
Van91I	CCANNNNNTGG	1 cut(s)	147
VpaK11BI	GGWCC	1 cut(s)	150
VspI	ATTAAT	1 cut(s)	546
XapI	RAATTY	4 cut(s)	186, 260, 440, 532
XceI	RCATGY	1 cut(s)	519
XcmI	CCANNNNNNNNNTGG	1 cut(s)	282
XhoI	CTCGAG	2 cut(s)	650, 695
XmaI	CCCGGG	1 cut(s)	300
XmiI	GTMKAC	1 cut(s)	296

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.