Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0007313

Physical Location & Seq

Genomic Coordinates Forward (+)

1731877 .. 1735359

Gene Structure 3483 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCCAAAGCTCTGAACTTAATTAACCATGCAATTTTCCCGCCTTTTTTATCCCCTACAACTACAATACCCAAGAGGAATTTCTGTATTGTTAGAGCTTCAACAGAGTCCTCTGAGACCCCCCAAACTTCAGCTTCTGTTCAAACCAAACCAGAACCTTCATCGCCGCCGGTAACATTTGCTCCTCCGCCCAATTTTAAGCCGCCGGAGCCAAAGCGGTTCGGTGTCAGGCCTGATAAAGTTTGGGACATCTTCGGGGCTTCTCTTGCCTTGTTCTTCCGGTTGGGGACTGGCGTTTTCGTTTCTGGGTATTCTTTCTCTTTCGTTCCGAAAGATGATATTCCTGCGGACCAGTATGCTCTCGAGTACAATGATTCTAAGGTCAAAGAGACTTCAAAAGTAGGCCCTCGCCCGGTGAAGCCTATTGAGATATATGAGTTTGAAGGCTGCCCATTCTGCCGTAAGGTTAGGGAAATCGTTGCGGTATTGGACCTCGATGTTCTATTTTATCCTTGCCCAAAAGGTGGTCCAAACTTTCGTCGCAAGGTTGTTGAGATGGGTGGAAAACAGCAGTTCCCTTACATGGTGGATCCGAACACTGGAGTTTCAATGTATGAATCCGATGACATAATCAAGTACTTGGTTGGGAAGTATGGTGATGGAACCGTTCCTCTTGCACTGTCACTTGGTTTATTAACGACTTTGACTGCAGGCTTTGCTTTGATTGGTCGTTCGGGAAAGGGTTCTAGCTATTCTCCATCAAAACTACCACCCAAACCACTTGTAGTCTGGGCATATGAGGGATCGCCTTTCTGCAAAATTGCGCGTGAAGTACTTGTGGAGTTAGAACTGCCTCACATATATCGCAGCTGTGCTCGTGGCAGTCCAAAACGACAATTACTGTTTGACAAAACCGGACGTTTTCAGGCTCCTTACCTAGAAGATCCAAATACGGGCGTGGAAATGTTCGAAAGTGCAGAAATTGCAGAATATCTAAGAGCAACGTATGCTCTACAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GST_N_3

Protein Analysis

340

Amino Acids

37.54

Weight (kDa)

8.73

Isoelectric Point (pI)

47.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_N_3	PF13417	145 - 219	2.3e-16	Glutathione S-transferase, N-terminal domain
GST_N_3	PF13417	266 - 337	4.7e-10	Glutathione S-transferase, N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007313)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03880
fragaria_vesca	FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820 FvH4_6g18820
malus_domestica	MD12G1036800.v1.1 MD14G1023500.v1.1
prunus_persica	Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1 Prupe.7G109400_v2.0.a1
pyrus_communis	pycom12g02420 pycom14g02240
rosa_chinensis	RchiOBHm_Chr3g0473831
rosa_laevigata	RLG00000023980
rosa_multiflora	Rmu_sc0005561.1_g000004
rosa_roxburghii	Rroxscaffold_6G00407740
rosa_rugosa	Rorug03G0135800
rosa_samantha	Rh3AG186300 Rh3BG214900 Rh3CG211600 Rh3DG210700
rosa_wichuraiana	Rw3G017040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	524
AccII	CGCG	1 cut(s)	826
AciI	CCGC	7 cut(s)	41, 167, 188, 203, 217, 347, 482
AclWI	GGATC	4 cut(s)	584, 597, 811, 938
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	79
AcuI	CTGAAG	1 cut(s)	114
AfaI	GTAC	3 cut(s)	368, 638, 834
AfiI	CCNNNNNNNGG	5 cut(s)	412, 524, 583, 599, 953
AgsI	TTSAA	5 cut(s)	102, 143, 396, 443, 609
AjuI	GAANNNNNNNTTGG	2 cut(s)	65, 97
AluBI	AGCT	5 cut(s)	11, 98, 134, 750, 870
AluI	AGCT	5 cut(s)	11, 98, 134, 750, 870
Alw21I	GWGCWC	1 cut(s)	877
Alw26I	GTCTC	2 cut(s)	110, 383
AlwI	GGATC	4 cut(s)	584, 597, 811, 938
AlwNI	CAGNNNCTG	1 cut(s)	137
Ama87I	CYCGRG	1 cut(s)	362
AoxI	GGCC	3 cut(s)	3, 230, 403
ApeKI	GCWGC	2 cut(s)	447, 867
ApoI	RAATTY	1 cut(s)	79
Asp700I	GAANNNNTTC	1 cut(s)	742
AspLEI	GCGC	1 cut(s)	826
AspS9I	GGNCC	4 cut(s)	349, 404, 490, 527
AsuC2I	CCSGG	1 cut(s)	413
AsuHPI	GGTGA	2 cut(s)	427, 668
AsuII	TTCGAA	1 cut(s)	969
AvaI	CYCGRG	1 cut(s)	362
AvaII	GGWCC	3 cut(s)	349, 490, 527
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	589
BauI	CACGAG	1 cut(s)	876
Bbv12I	GWGCWC	1 cut(s)	877
BbvI	GCAGC	2 cut(s)	434, 879
BccI	CCATC	3 cut(s)	550, 653, 766
BceAI	ACGGC	1 cut(s)	444
BcnI	CCSGG	1 cut(s)	413
BcoDI	GTCTC	2 cut(s)	110, 383
BfaI	CTAG	2 cut(s)	747, 938
BfmI	CTRYAG	2 cut(s)	708, 1013
BisI	GCNGC	4 cut(s)	167, 203, 448, 868
BlsI	GCNGC	4 cut(s)	168, 204, 449, 869
BmcAI	AGTACT	2 cut(s)	638, 834
Bme1390I	CCNGG	1 cut(s)	413
Bme18I	GGWCC	3 cut(s)	349, 490, 527
BmeT110I	CYCGRG	1 cut(s)	362
BmgT120I	GGNCC	4 cut(s)	349, 404, 490, 527
BmiI	GGNNCC	4 cut(s)	210, 591, 664, 930
BmrFI	CCNGG	1 cut(s)	413
BpmI	CTGGAG	1 cut(s)	621
Bpu14I	TTCGAA	1 cut(s)	969
BpuMI	CCSGG	1 cut(s)	413
BsaI	GGTCTC	1 cut(s)	110
BsaWI	WCCGGW	2 cut(s)	279, 914
BsaXI	ACNNNNNCTCC	2 cut(s)	166, 196
Bsc4I	CCNNNNNNNGG	5 cut(s)	412, 524, 583, 599, 953
Bse118I	RCCGGY	1 cut(s)	169
Bse1I	ACTGG	3 cut(s)	295, 352, 604
BseLI	CCNNNNNNNGG	5 cut(s)	412, 524, 583, 599, 953
BseMII	CTCAG	1 cut(s)	105
BseNI	ACTGG	3 cut(s)	295, 352, 604
BseRI	GAGGAG	1 cut(s)	174
BseXI	GCAGC	2 cut(s)	434, 879
BsgI	GTGCAG	1 cut(s)	996
Bsh1236I	CGCG	1 cut(s)	826
BshFI	GGCC	3 cut(s)	5, 232, 405
BsiHKAI	GWGCWC	1 cut(s)	877
BsiHKCI	CYCGRG	1 cut(s)	362
BsiSI	CCGG	5 cut(s)	170, 206, 280, 413, 915
BslFI	GGGAC	2 cut(s)	260, 301
BslI	CCNNNNNNNGG	5 cut(s)	412, 524, 583, 599, 953
BsmAI	GTCTC	2 cut(s)	110, 383
BsmFI	GGGAC	2 cut(s)	260, 301
BsnI	GGCC	3 cut(s)	5, 232, 405
Bso31I	GGTCTC	1 cut(s)	110
BsoBI	CYCGRG	1 cut(s)	362
Bsp119I	TTCGAA	1 cut(s)	969
Bsp1286I	GDGCHC	1 cut(s)	877
Bsp143I	GATC	3 cut(s)	589, 803, 943
BspACI	CCGC	7 cut(s)	41, 167, 188, 203, 217, 347, 482
BspANI	GGCC	3 cut(s)	5, 232, 405
BspCNI	CTCAG	1 cut(s)	106
BspFNI	CGCG	1 cut(s)	826
BspLI	GGNNCC	4 cut(s)	210, 591, 664, 930
BspMAI	CTGCAG	1 cut(s)	712
BspPI	GGATC	4 cut(s)	584, 597, 811, 938
BspT104I	TTCGAA	1 cut(s)	969
BspTNI	GGTCTC	1 cut(s)	110
BsrFI	RCCGGY	1 cut(s)	169
BsrI	ACTGG	3 cut(s)	295, 352, 604
BssAI	RCCGGY	1 cut(s)	169
BssMI	GATC	3 cut(s)	589, 803, 943
BssSI	CACGAG	1 cut(s)	876
Bst2BI	CACGAG	1 cut(s)	876
Bst4CI	ACNGT	4 cut(s)	667, 681, 903, 1017
BstAPI	GCANNNNNTGC	3 cut(s)	716, 983, 1007
BstBI	TTCGAA	1 cut(s)	969
BstC8I	GCNNGC	1 cut(s)	712
BstDEI	CTNAG	3 cut(s)	114, 378, 995
BstFNI	CGCG	1 cut(s)	826
BstHHI	GCGC	1 cut(s)	826
BstKTI	GATC	3 cut(s)	592, 806, 946
BstMAI	GTCTC	2 cut(s)	110, 383
BstMBI	GATC	3 cut(s)	589, 803, 943
BstMWI	GCNNNNNNNGC	6 cut(s)	208, 266, 456, 716, 983, 1007
BstSCI	CCNGG	1 cut(s)	411
BstSFI	CTRYAG	2 cut(s)	708, 1013
BstUI	CGCG	1 cut(s)	826
BstV1I	GCAGC	2 cut(s)	434, 879
BstX2I	RGATCY	2 cut(s)	589, 943
BstYI	RGATCY	2 cut(s)	589, 943
BsuRI	GGCC	3 cut(s)	5, 232, 405
BtgZI	GCGATG	1 cut(s)	147
BtsIMutI	CAGTG	2 cut(s)	597, 677
Cac8I	GCNNGC	1 cut(s)	712
CaiI	CAGNNNCTG	1 cut(s)	137
CfoI	GCGC	1 cut(s)	826
Cfr10I	RCCGGY	1 cut(s)	169
Cfr13I	GGNCC	4 cut(s)	349, 404, 490, 527
Csp6I	GTAC	3 cut(s)	367, 637, 833
CviAII	CATG	2 cut(s)	29, 583
CviQI	GTAC	3 cut(s)	367, 637, 833
DdeI	CTNAG	3 cut(s)	114, 378, 995
DpnI	GATC	3 cut(s)	591, 805, 945
DpnII	GATC	3 cut(s)	589, 803, 943
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	177
Eco147I	AGGCCT	1 cut(s)	232
Eco31I	GGTCTC	1 cut(s)	110
Eco47I	GGWCC	3 cut(s)	349, 490, 527
Eco57I	CTGAAG	1 cut(s)	114
Eco88I	CYCGRG	1 cut(s)	362
EcoO109I	RGGNCCY	1 cut(s)	404
FaeI	CATG	2 cut(s)	32, 586
FaqI	GGGAC	2 cut(s)	260, 301
FatI	CATG	2 cut(s)	28, 582
FauI	CCCGC	1 cut(s)	48
FauNDI	CATATG	1 cut(s)	796
Fnu4HI	GCNGC	4 cut(s)	167, 203, 448, 868
Fsp4HI	GCNGC	4 cut(s)	167, 203, 448, 868
FspBI	CTAG	2 cut(s)	747, 938
GlaI	GCGC	1 cut(s)	825
GluI	GCNGC	4 cut(s)	167, 203, 448, 868
GsuI	CTGGAG	1 cut(s)	621
HaeIII	GGCC	3 cut(s)	5, 232, 405
HapII	CCGG	5 cut(s)	170, 206, 280, 413, 915
HhaI	GCGC	1 cut(s)	826
Hin1II	CATG	2 cut(s)	32, 586
Hin6I	GCGC	1 cut(s)	824
HinP1I	GCGC	1 cut(s)	824
HinfI	GANTC	3 cut(s)	107, 374, 617
HpaII	CCGG	5 cut(s)	170, 206, 280, 413, 915
HphI	GGTGA	2 cut(s)	427, 668
Hpy188I	TCNGA	5 cut(s)	15, 115, 330, 594, 622
Hpy188III	TCNNGA	2 cut(s)	362, 735
Hpy99I	CGWCG	1 cut(s)	543
HpyAV	CCTTC	2 cut(s)	168, 437
HpyCH4III	ACNGT	4 cut(s)	667, 681, 903, 1017
HpyCH4IV	ACGT	2 cut(s)	919, 1004
HpyCH4V	TGCA	6 cut(s)	32, 677, 710, 816, 977, 986
HpyF10VI	GCNNNNNNNGC	6 cut(s)	208, 266, 456, 716, 983, 1007
HpyF3I	CTNAG	3 cut(s)	114, 378, 995
HpySE526I	ACGT	2 cut(s)	919, 1004
Hsp92II	CATG	2 cut(s)	32, 586
HspAI	GCGC	1 cut(s)	824
Kzo9I	GATC	3 cut(s)	589, 803, 943
LmnI	GCTCC	3 cut(s)	187, 208, 934
Lsp1109I	GCAGC	2 cut(s)	434, 879
MaeI	CTAG	2 cut(s)	747, 938
MaeII	ACGT	2 cut(s)	919, 1004
MaeIII	GTNAC	2 cut(s)	172, 681
MalI	GATC	3 cut(s)	591, 805, 945
MboI	GATC	3 cut(s)	589, 803, 943
MboII	GAAGA	3 cut(s)	244, 268, 953
MflI	RGATCY	2 cut(s)	589, 943
MhlI	GDGCHC	1 cut(s)	877
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	7 cut(s)	21, 33, 79, 193, 819, 896, 981
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	8 cut(s)	69, 121, 195, 417, 503, 681, 793, 864
Mox20I	TGGCCA	1 cut(s)	5
MroXI	GAANNNNTTC	1 cut(s)	742
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	4 cut(s)	20, 24, 198, 695
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	1 cut(s)	870
MspI	CCGG	5 cut(s)	170, 206, 280, 413, 915
MspR9I	CCNGG	1 cut(s)	413
MvnI	CGCG	1 cut(s)	826
MwoI	GCNNNNNNNGC	6 cut(s)	208, 266, 456, 716, 983, 1007
NciI	CCSGG	1 cut(s)	413
NdeI	CATATG	1 cut(s)	796
NdeII	GATC	3 cut(s)	589, 803, 943
NlaIII	CATG	2 cut(s)	32, 586
NlaIV	GGNNCC	4 cut(s)	210, 591, 664, 930
NmuCI	GTSAC	1 cut(s)	681
NspV	TTCGAA	1 cut(s)	969
PacI	TTAATTAA	1 cut(s)	24
PaeR7I	CTCGAG	1 cut(s)	362
PceI	AGGCCT	1 cut(s)	232
PdmI	GAANNNNTTC	1 cut(s)	742
PfeI	GAWTC	2 cut(s)	374, 617
PflMI	CCANNNNNTGG	1 cut(s)	524
PkrI	GCNGC	4 cut(s)	168, 204, 449, 869
PleI	GAGTC	1 cut(s)	115
PpsI	GAGTC	1 cut(s)	115
PspN4I	GGNNCC	4 cut(s)	210, 591, 664, 930
PspPI	GGNCC	4 cut(s)	349, 404, 490, 527
PstI	CTGCAG	1 cut(s)	712
PstNI	CAGNNNCTG	1 cut(s)	137
PsuI	RGATCY	2 cut(s)	589, 943
PvuII	CAGCTG	1 cut(s)	870
RsaI	GTAC	3 cut(s)	368, 638, 834
RsaNI	GTAC	3 cut(s)	367, 637, 833
SaqAI	TTAA	4 cut(s)	20, 24, 198, 695
SatI	GCNGC	4 cut(s)	167, 203, 448, 868
Sau3AI	GATC	3 cut(s)	589, 803, 943
Sau96I	GGNCC	4 cut(s)	349, 404, 490, 527
ScaI	AGTACT	2 cut(s)	638, 834
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	413
SduI	GDGCHC	1 cut(s)	877
SfcI	CTRYAG	2 cut(s)	708, 1013
Sfr274I	CTCGAG	1 cut(s)	362
SfuI	TTCGAA	1 cut(s)	969
SinI	GGWCC	3 cut(s)	349, 490, 527
SlaI	CTCGAG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	362
SmoI	CTYRAG	1 cut(s)	362
Sse9I	AATT	7 cut(s)	21, 33, 79, 193, 819, 896, 981
SseBI	AGGCCT	1 cut(s)	232
SsiI	CCGC	7 cut(s)	41, 167, 188, 203, 217, 347, 482
SspMI	CTAG	2 cut(s)	747, 938
StuI	AGGCCT	1 cut(s)	232
StyD4I	CCNGG	1 cut(s)	411
TaaI	ACNGT	4 cut(s)	667, 681, 903, 1017
TaiI	ACGT	2 cut(s)	922, 1007
TaqI	TCGA	3 cut(s)	363, 495, 969
TasI	AATT	7 cut(s)	21, 33, 79, 193, 819, 896, 981
TatI	WGTACW	3 cut(s)	366, 636, 832
TauI	GCSGC	2 cut(s)	169, 205
TfiI	GAWTC	2 cut(s)	374, 617
Tru1I	TTAA	4 cut(s)	20, 24, 198, 695
Tru9I	TTAA	4 cut(s)	20, 24, 198, 695
TscAI	CASTG	2 cut(s)	604, 684
TseFI	GTSAC	1 cut(s)	681
TseI	GCWGC	2 cut(s)	447, 867
Tsp45I	GTSAC	1 cut(s)	681
TspDTI	ATGAA	2 cut(s)	150, 630
TspRI	CASTG	2 cut(s)	604, 684
Van91I	CCANNNNNTGG	1 cut(s)	524
VpaK11BI	GGWCC	3 cut(s)	349, 490, 527
XapI	RAATTY	1 cut(s)	79
XcmI	CCANNNNNNNNNTGG	1 cut(s)	786
XhoI	CTCGAG	1 cut(s)	362
XmnI	GAANNNNTTC	1 cut(s)	742
XspI	CTAG	2 cut(s)	747, 938
ZrmI	AGTACT	2 cut(s)	638, 834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.