Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0005835

Physical Location & Seq

Genomic Coordinates Reverse (-)

3306096 .. 3308665

Gene Structure 2570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGAAATTTGGAGAGACTTACACCGAGTTTTTGCACAAGGAAAAGATACGATTCTCGGAGAATTGCTCGCATGTCGAGTACAAGCGGCTGAAGAACGTTCTCAAGACTTGTCAGAGTTGCAAGGCATTGCAGGAATCTTCGGCTGCTCAAGGACAAGAAGGTGCTTCTAATCAAAATCAGCAGTTGTGCCAATGCCAATCTTGCCCTTTGTGTGATCAGGCCTTTTTCACAGAGTTAATGAAGGAGGTTTCGGACATAGCTCTATGTTTTAGTTTGAGAGTCAGACATCTCCTCCATCTGCATGTTGCTACCGGAGCGCAAAGATACTTACTGCGGTTTCGTCAGTGTTTCGTGAATGATCAACAAGCCATGGTAGAAAAAGGGCGGATGCTGATCGAGTATGTTACGATGAACGCAATTGCTATCAGAAAAATCCTTGAGAAATATGATAAAATACATAGCTCTGAGAATGGCAAGCTTTTCAAATCCAAGATGCGGGCTCAACATATTGAGATTTTACAATCACCTTGGCTTATAGAATTGGGTGCTTTTTATTTGAATCTTGATGGATTAGATGATGAAGAGCTCAATGAGGTTTCTGGTCGCTTTTCCTGTGATCTCGATGCGGCACCACCTACAATGACATTGATGCTTCCTCACAACTTAAAGATGGAATATGATCTGACTTGTGCTGTATGCTTGGAAACTGTTTTCAATCCATATGCTTTGAGCTGCGGCCACCTGTTCTGCAAGCCTTGTGCTTGCGCAGCTGCTTCTGTGTTTATTTTCCAAGGCCCTAAATCTGCAGGCCTGGATGCAAAGTGCCCACTATGCAGAGAGGCTGGAGTGTTTGCTAAAGCAGTGCACATGTTGGAACTAGATCTGCTCTTGAAAACAAGGTGCAAAGACTATTGGAAAGAGAGGTACAACGCCGAACGCACAGAGATAGTGAAGCAAACTAAGGAGTTCTGGGATATGCAAGCCAAATACGCGGTGTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019787 GO:0019941 GO:0030163 GO:0032446 GO:0036211 GO:0043161 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0051603 GO:0061630 GO:0061659 GO:0070647 GO:0071704 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-C3HC4_3 zf-RING_UBOX

Protein Analysis

334

Amino Acids

38.17

Weight (kDa)

7.45

Isoelectric Point (pI)

44.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RING_XB3-XBAT31	PF24921	229 - 280	5.2e-07	E3 ubiquitin-protein ligase XB3/XBAT31 RING finger
zf-C3HC4	PF00097	230 - 278	1.7e-06	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	230 - 254	7.5e-06	RING-type zinc-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920 AT2G38920
fragaria_vesca	FvH4_6g21121 FvH4_6g21121
malus_domestica	MD12G1046800.v1.1 MD14G1045700.v1.1
prunus_persica	Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1 Prupe.7G088600_v2.0.a1
pyrus_communis	pycom14g03840
rosa_chinensis	RchiOBHm_Chr3g0477541
rosa_laevigata	RLG00000023710
rosa_multiflora	Rmu_sc0000775.1_g000014 Rmu_sc0040889.1_g000001
rosa_roxburghii	Rroxscaffold_6G00403850 Rroxscaffold_6G00404550
rosa_rugosa	Rorug03G0161900
rosa_samantha	Rh3AG211900 Rh3BG245700 Rh3CG239300 Rh3DG238800 Rh5AG304100
rosa_wichuraiana	Rw3G019200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	766
AccB1I	GGYRCC	1 cut(s)	628
AccII	CGCG	1 cut(s)	992
AciI	CCGC	7 cut(s)	85, 334, 385, 496, 626, 735, 992
AclI	AACGTT	1 cut(s)	96
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	1 cut(s)	5
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	2 cut(s)	80, 926
AfiI	CCNNNNNNNGG	1 cut(s)	495
AflIII	ACRYGT	1 cut(s)	867
AgsI	TTSAA	4 cut(s)	484, 559, 715, 892
AjnI	CCWGG	1 cut(s)	810
AluBI	AGCT	6 cut(s)	260, 462, 478, 586, 732, 770
AluI	AGCT	6 cut(s)	260, 462, 478, 586, 732, 770
Alw21I	GWGCWC	2 cut(s)	588, 867
Alw26I	GTCTC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	863
AoxI	GGCC	4 cut(s)	219, 736, 793, 808
ApaLI	GTGCAC	1 cut(s)	863
ApeKI	GCWGC	4 cut(s)	143, 732, 767, 770
ApoI	RAATTY	1 cut(s)	5
AspLEI	GCGC	2 cut(s)	319, 767
AspS9I	GGNCC	1 cut(s)	794
AsuHPI	GGTGA	1 cut(s)	516
BaeGI	GKGCMC	2 cut(s)	827, 867
BanI	GGYRCC	1 cut(s)	628
BanII	GRGCYC	2 cut(s)	502, 588
Bbv12I	GWGCWC	2 cut(s)	588, 867
BbvI	GCAGC	4 cut(s)	130, 719, 757, 779
BccI	CCATC	3 cut(s)	303, 560, 664
BciT130I	CCWGG	1 cut(s)	812
BclI	TGATCA	2 cut(s)	214, 358
BcoDI	GTCTC	1 cut(s)	8
BfaI	CTAG	1 cut(s)	878
BfmI	CTRYAG	1 cut(s)	804
BglII	AGATCT	1 cut(s)	880
BisI	GCNGC	7 cut(s)	86, 144, 627, 733, 736, 768, 771
BlsI	GCNGC	7 cut(s)	87, 145, 628, 734, 737, 769, 772
Bme1390I	CCNGG	1 cut(s)	812
BmgT120I	GGNCC	1 cut(s)	794
BmiI	GGNNCC	1 cut(s)	630
BmrFI	CCNGG	1 cut(s)	812
BmsI	GCATC	5 cut(s)	378, 483, 613, 639, 805
BplI	GAGNNNNNCTC	2 cut(s)	50, 82
BpmI	CTGGAG	1 cut(s)	864
BpuEI	CTTGAG	3 cut(s)	86, 132, 458
BsaBI	GATNNNNATC	1 cut(s)	392
BsaJI	CCNNGG	3 cut(s)	369, 527, 790
BsaWI	WCCGGW	1 cut(s)	311
BsaXI	ACNNNNNCTCC	2 cut(s)	276, 306
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse3DI	GCAATG	1 cut(s)	125
Bse8I	GATNNNNATC	1 cut(s)	392
BseBI	CCWGG	1 cut(s)	812
BseDI	CCNNGG	3 cut(s)	369, 527, 790
BseGI	GGATG	2 cut(s)	393, 820
BseJI	GATNNNNATC	1 cut(s)	392
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMI	GCAATG	1 cut(s)	125
BseMII	CTCAG	1 cut(s)	456
BseRI	GAGGAG	1 cut(s)	281
BseSI	GKGCMC	2 cut(s)	827, 867
BseXI	GCAGC	4 cut(s)	130, 719, 757, 779
Bsh1236I	CGCG	1 cut(s)	992
BshFI	GGCC	4 cut(s)	221, 738, 795, 810
BshNI	GGYRCC	1 cut(s)	628
BsiHKAI	GWGCWC	2 cut(s)	588, 867
BsiSI	CCGG	1 cut(s)	312
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	1 cut(s)	8
BsnI	GGCC	4 cut(s)	221, 738, 795, 810
Bsp1286I	GDGCHC	4 cut(s)	502, 588, 827, 867
Bsp143I	GATC	6 cut(s)	214, 358, 393, 616, 679, 880
Bsp19I	CCATGG	1 cut(s)	369
BspACI	CCGC	7 cut(s)	85, 334, 385, 496, 626, 735, 992
BspANI	GGCC	4 cut(s)	221, 738, 795, 810
BspCNI	CTCAG	1 cut(s)	457
BspFNI	CGCG	1 cut(s)	992
BspLI	GGNNCC	1 cut(s)	630
BspMAI	CTGCAG	1 cut(s)	808
BspQI	GCTCTTC	1 cut(s)	576
BspT107I	GGYRCC	1 cut(s)	628
BsrDI	GCAATG	1 cut(s)	125
BssECI	CCNNGG	3 cut(s)	369, 527, 790
BssMI	GATC	6 cut(s)	214, 358, 393, 616, 679, 880
BssT1I	CCWWGG	3 cut(s)	369, 527, 790
Bst2UI	CCWGG	1 cut(s)	812
Bst4CI	ACNGT	1 cut(s)	709
Bst6I	CTCTTC	1 cut(s)	576
BstC8I	GCNNGC	7 cut(s)	68, 476, 498, 752, 763, 808, 981
BstDEI	CTNAG	2 cut(s)	465, 960
BstDSI	CCRYGG	1 cut(s)	369
BstF5I	GGATG	2 cut(s)	393, 820
BstFNI	CGCG	1 cut(s)	992
BstHHI	GCGC	2 cut(s)	319, 767
BstKTI	GATC	6 cut(s)	217, 361, 396, 619, 682, 883
BstMAI	GTCTC	1 cut(s)	8
BstMBI	GATC	6 cut(s)	214, 358, 393, 616, 679, 880
BstMWI	GCNNNNNNNGC	5 cut(s)	201, 314, 767, 831, 989
BstNI	CCWGG	1 cut(s)	812
BstNSI	RCATGY	3 cut(s)	74, 305, 871
BstSCI	CCNGG	1 cut(s)	810
BstSFI	CTRYAG	1 cut(s)	804
BstSLI	GKGCMC	2 cut(s)	827, 867
BstUI	CGCG	1 cut(s)	992
BstV1I	GCAGC	4 cut(s)	130, 719, 757, 779
BstX2I	RGATCY	1 cut(s)	880
BstYI	RGATCY	1 cut(s)	880
BsuRI	GGCC	4 cut(s)	221, 738, 795, 810
BtgI	CCRYGG	1 cut(s)	369
BtsCI	GGATG	2 cut(s)	393, 820
BtsI	GCAGTG	1 cut(s)	867
BtsIMutI	CAGTG	2 cut(s)	350, 867
Cac8I	GCNNGC	7 cut(s)	68, 476, 498, 752, 763, 808, 981
CfoI	GCGC	2 cut(s)	319, 767
Cfr13I	GGNCC	1 cut(s)	794
Csp6I	GTAC	2 cut(s)	79, 925
CviAII	CATG	4 cut(s)	71, 302, 370, 868
CviQI	GTAC	2 cut(s)	79, 925
DdeI	CTNAG	2 cut(s)	465, 960
DpnI	GATC	6 cut(s)	216, 360, 395, 618, 681, 882
DpnII	GATC	6 cut(s)	214, 358, 393, 616, 679, 880
EaeI	YGGCCR	1 cut(s)	736
Eam1104I	CTCTTC	1 cut(s)	576
EarI	CTCTTC	1 cut(s)	576
EciI	GGCGGA	1 cut(s)	400
Ecl136II	GAGCTC	1 cut(s)	586
Eco130I	CCWWGG	3 cut(s)	369, 527, 790
Eco147I	AGGCCT	2 cut(s)	221, 810
Eco24I	GRGCYC	2 cut(s)	502, 588
Eco53kI	GAGCTC	1 cut(s)	586
Eco57I	CTGAAG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	586
EcoO109I	RGGNCCY	1 cut(s)	794
EcoRII	CCWGG	1 cut(s)	810
EcoT14I	CCWWGG	3 cut(s)	369, 527, 790
EcoT38I	GRGCYC	2 cut(s)	502, 588
ErhI	CCWWGG	3 cut(s)	369, 527, 790
FaeI	CATG	4 cut(s)	74, 305, 373, 871
FatI	CATG	4 cut(s)	70, 301, 369, 867
FauI	CCCGC	1 cut(s)	489
FauNDI	CATATG	1 cut(s)	721
FbaI	TGATCA	2 cut(s)	214, 358
Fnu4HI	GCNGC	7 cut(s)	86, 144, 627, 733, 736, 768, 771
FokI	GGATG	2 cut(s)	400, 827
FriOI	GRGCYC	2 cut(s)	502, 588
Fsp4HI	GCNGC	7 cut(s)	86, 144, 627, 733, 736, 768, 771
FspBI	CTAG	1 cut(s)	878
FspI	TGCGCA	1 cut(s)	766
GlaI	GCGC	2 cut(s)	318, 766
GluI	GCNGC	7 cut(s)	86, 144, 627, 733, 736, 768, 771
GsuI	CTGGAG	1 cut(s)	864
HaeIII	GGCC	4 cut(s)	221, 738, 795, 810
HapII	CCGG	1 cut(s)	312
HhaI	GCGC	2 cut(s)	319, 767
Hin1II	CATG	4 cut(s)	74, 305, 373, 871
Hin6I	GCGC	2 cut(s)	317, 765
HinP1I	GCGC	2 cut(s)	317, 765
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	4 cut(s)	51, 134, 279, 559
HpaII	CCGG	1 cut(s)	312
HphI	GGTGA	1 cut(s)	516
Hpy166II	GTNNAC	1 cut(s)	865
Hpy188I	TCNGA	7 cut(s)	58, 114, 253, 284, 428, 466, 684
Hpy188III	TCNNGA	5 cut(s)	103, 352, 563, 620, 889
Hpy8I	GTNNAC	1 cut(s)	865
HpyAV	CCTTC	2 cut(s)	152, 235
HpyCH4III	ACNGT	1 cut(s)	709
HpyCH4IV	ACGT	1 cut(s)	96
HpyF10VI	GCNNNNNNNGC	5 cut(s)	201, 314, 767, 831, 989
HpyF3I	CTNAG	2 cut(s)	465, 960
HpySE526I	ACGT	1 cut(s)	96
Hsp92II	CATG	4 cut(s)	74, 305, 373, 871
HspAI	GCGC	2 cut(s)	317, 765
Ksp22I	TGATCA	2 cut(s)	214, 358
Kzo9I	GATC	6 cut(s)	214, 358, 393, 616, 679, 880
LguI	GCTCTTC	1 cut(s)	576
LmnI	GCTCC	1 cut(s)	314
Lsp1109I	GCAGC	4 cut(s)	130, 719, 757, 779
LweI	GCATC	5 cut(s)	378, 483, 613, 639, 805
MaeI	CTAG	1 cut(s)	878
MaeII	ACGT	1 cut(s)	96
MaeIII	GTNAC	1 cut(s)	403
MalI	GATC	6 cut(s)	216, 360, 395, 618, 681, 882
MboI	GATC	6 cut(s)	214, 358, 393, 616, 679, 880
MboII	GAAGA	3 cut(s)	103, 129, 593
MfeI	CAATTG	1 cut(s)	417
MflI	RGATCY	1 cut(s)	880
MhlI	GDGCHC	4 cut(s)	502, 588, 827, 867
MluCI	AATT	4 cut(s)	5, 61, 417, 539
MlyI	GAGTC	1 cut(s)	288
MmeI	TCCRAC	1 cut(s)	852
MnlI	CCTC	6 cut(s)	238, 302, 586, 666, 832, 915
MseI	TTAA	2 cut(s)	236, 665
MslI	CAYNNNNRTG	1 cut(s)	300
MspA1I	CMGCKG	1 cut(s)	770
MspI	CCGG	1 cut(s)	312
MspR9I	CCNGG	1 cut(s)	812
MunI	CAATTG	1 cut(s)	417
MvaI	CCWGG	1 cut(s)	812
MvnI	CGCG	1 cut(s)	992
MwoI	GCNNNNNNNGC	5 cut(s)	201, 314, 767, 831, 989
NcoI	CCATGG	1 cut(s)	369
NdeI	CATATG	1 cut(s)	721
NdeII	GATC	6 cut(s)	214, 358, 393, 616, 679, 880
NlaIII	CATG	4 cut(s)	74, 305, 373, 871
NlaIV	GGNNCC	1 cut(s)	630
NsbI	TGCGCA	1 cut(s)	766
NspI	RCATGY	3 cut(s)	74, 305, 871
PceI	AGGCCT	2 cut(s)	221, 810
PciI	ACATGT	1 cut(s)	867
PciSI	GCTCTTC	1 cut(s)	576
PfeI	GAWTC	3 cut(s)	51, 134, 559
PkrI	GCNGC	7 cut(s)	87, 145, 628, 734, 737, 769, 772
PleI	GAGTC	1 cut(s)	287
PpsI	GAGTC	1 cut(s)	287
PscI	ACATGT	1 cut(s)	867
Psp124BI	GAGCTC	1 cut(s)	588
Psp1406I	AACGTT	1 cut(s)	96
Psp6I	CCWGG	1 cut(s)	810
PspGI	CCWGG	1 cut(s)	810
PspN4I	GGNNCC	1 cut(s)	630
PspPI	GGNCC	1 cut(s)	794
PstI	CTGCAG	1 cut(s)	808
PsuI	RGATCY	1 cut(s)	880
PvuII	CAGCTG	1 cut(s)	770
RsaI	GTAC	2 cut(s)	80, 926
RsaNI	GTAC	2 cut(s)	79, 925
RseI	CAYNNNNRTG	1 cut(s)	300
SacI	GAGCTC	1 cut(s)	588
SapI	GCTCTTC	1 cut(s)	576
SaqAI	TTAA	2 cut(s)	236, 665
SatI	GCNGC	7 cut(s)	86, 144, 627, 733, 736, 768, 771
Sau3AI	GATC	6 cut(s)	214, 358, 393, 616, 679, 880
Sau96I	GGNCC	1 cut(s)	794
SchI	GAGTC	1 cut(s)	288
ScrFI	CCNGG	1 cut(s)	812
SduI	GDGCHC	4 cut(s)	502, 588, 827, 867
SfaNI	GCATC	5 cut(s)	378, 483, 613, 639, 805
SfcI	CTRYAG	1 cut(s)	804
SmiMI	CAYNNNNRTG	1 cut(s)	300
SmlI	CTYRAG	3 cut(s)	101, 147, 437
SmoI	CTYRAG	3 cut(s)	101, 147, 437
Sse9I	AATT	4 cut(s)	5, 61, 417, 539
SseBI	AGGCCT	2 cut(s)	221, 810
SsiI	CCGC	7 cut(s)	85, 334, 385, 496, 626, 735, 992
SspMI	CTAG	1 cut(s)	878
SstI	GAGCTC	1 cut(s)	588
StuI	AGGCCT	2 cut(s)	221, 810
StyD4I	CCNGG	1 cut(s)	810
StyI	CCWWGG	3 cut(s)	369, 527, 790
TaaI	ACNGT	1 cut(s)	709
TaiI	ACGT	1 cut(s)	99
TaqI	TCGA	3 cut(s)	75, 396, 621
TasI	AATT	4 cut(s)	5, 61, 417, 539
TatI	WGTACW	1 cut(s)	78
TauI	GCSGC	3 cut(s)	88, 629, 738
TfiI	GAWTC	3 cut(s)	51, 134, 559
Tru1I	TTAA	2 cut(s)	236, 665
Tru9I	TTAA	2 cut(s)	236, 665
TscAI	CASTG	2 cut(s)	350, 867
TseI	GCWGC	4 cut(s)	143, 732, 767, 770
TspDTI	ATGAA	4 cut(s)	17, 254, 425, 594
TspRI	CASTG	2 cut(s)	350, 867
VneI	GTGCAC	1 cut(s)	863
XapI	RAATTY	1 cut(s)	5
XceI	RCATGY	3 cut(s)	74, 305, 871
XspI	CTAG	1 cut(s)	878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.