Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0012982

Physical Location & Seq

Genomic Coordinates Forward (+)

3733219 .. 3733479

Gene Structure 261 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

ATGGTAGTTAAAGCCAAGACAGACAAGAGAGGCTATTTCTTCATAGCAGCCTCCAAGAACATCACCACCTCTTTGTCGCATAAGTGCAGGGTCTCACTTTTTACATCACCGTTGACCTCTTGCTCGAAGCCGACTAATTTCCACGCGGGACAGAAGGGTGCGATCTTGAGGCCAGTGAAGGTATTTGTCAACAAAAAACTCCCGTTCAGTCCCTACTCAGTTGGTCCATTTTCCCTTGAGCCTAAATGCGGCTCTCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0008150 GO:0009505 GO:0009506 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0016020 GO:0030054 GO:0030312 GO:0042221 GO:0044464 GO:0048580 GO:0050789 GO:0050793 GO:0050896 GO:0051239 GO:0055044 GO:0065007 GO:0071944 GO:0080050 GO:1901700 GO:2000026 GO:2000033 GO:2000034 GO:2000241 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pollen_Ole_e_I

Protein Analysis

87

Amino Acids

9.39

Weight (kDa)

10.22

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pollen_Ole_e_1	PF01190	2 - 53	4.2e-10	Pollen protein Ole e 1 like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0012982)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G34700
fragaria_vesca	FvH4_3g09040
malus_domestica	MD05G1338000.v1.1 MD10G1293100.v1.1
prunus_persica	Prupe.4G048800_v2.0.a1
pyrus_communis	pycom05g28950 pycom10g24510 pycom14g04310
rosa_chinensis	RchiOBHm_Chr5g0008631
rosa_laevigata	RLG00000031588
rosa_multiflora	Rmu_sc0001665.1_g000026
rosa_roxburghii	Rroxscaffold_1G00067920
rosa_rugosa	Rorug04G0437500
rosa_samantha	Rh5AG066000 Rh5BG063400 Rh5CG073600 Rh5DG062800
rosa_wichuraiana	Rw5G006290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	146
AciI	CCGC	2 cut(s)	146, 249
AfiI	CCNNNNNNNGG	1 cut(s)	248
Alw26I	GTCTC	1 cut(s)	97
AoxI	GGCC	1 cut(s)	170
ApeKI	GCWGC	1 cut(s)	47
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	2 cut(s)	55, 99
AvaII	GGWCC	1 cut(s)	224
BbvI	GCAGC	1 cut(s)	59
BcoDI	GTCTC	1 cut(s)	97
BisI	GCNGC	2 cut(s)	48, 250
BlsI	GCNGC	2 cut(s)	49, 251
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BpuEI	CTTGAG	2 cut(s)	187, 257
BsaI	GGTCTC	1 cut(s)	97
Bsc4I	CCNNNNNNNGG	1 cut(s)	248
Bse1I	ACTGG	1 cut(s)	173
BseLI	CCNNNNNNNGG	1 cut(s)	248
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	1 cut(s)	173
BseXI	GCAGC	1 cut(s)	59
BsgI	GTGCAG	1 cut(s)	106
Bsh1236I	CGCG	1 cut(s)	146
BshFI	GGCC	1 cut(s)	172
BslFI	GGGAC	2 cut(s)	162, 195
BslI	CCNNNNNNNGG	1 cut(s)	248
BsmAI	GTCTC	1 cut(s)	97
BsmFI	GGGAC	2 cut(s)	162, 195
BsnI	GGCC	1 cut(s)	172
Bso31I	GGTCTC	1 cut(s)	97
Bsp143I	GATC	1 cut(s)	162
BspACI	CCGC	2 cut(s)	146, 249
BspANI	GGCC	1 cut(s)	172
BspCNI	CTCAG	1 cut(s)	230
BspFNI	CGCG	1 cut(s)	146
BspTNI	GGTCTC	1 cut(s)	97
BsrI	ACTGG	1 cut(s)	173
BssMI	GATC	1 cut(s)	162
Bst4CI	ACNGT	1 cut(s)	111
BstDEI	CTNAG	1 cut(s)	217
BstFNI	CGCG	1 cut(s)	146
BstKTI	GATC	1 cut(s)	165
BstMAI	GTCTC	1 cut(s)	97
BstMBI	GATC	1 cut(s)	162
BstUI	CGCG	1 cut(s)	146
BstV1I	GCAGC	1 cut(s)	59
BsuRI	GGCC	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	180
Cfr13I	GGNCC	1 cut(s)	224
CviJI	RGCY	7 cut(s)	14, 33, 50, 130, 172, 241, 252
CviKI_1	RGCY	7 cut(s)	14, 33, 50, 130, 172, 241, 252
DdeI	CTNAG	1 cut(s)	217
DpnI	GATC	1 cut(s)	164
DpnII	GATC	1 cut(s)	162
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	224
FaiI	YATR	2 cut(s)	44, 81
FaqI	GGGAC	2 cut(s)	162, 195
FauI	CCCGC	1 cut(s)	139
Fnu4HI	GCNGC	2 cut(s)	48, 250
Fsp4HI	GCNGC	2 cut(s)	48, 250
GluI	GCNGC	2 cut(s)	48, 250
HaeIII	GGCC	1 cut(s)	172
HincII	GTYRAC	2 cut(s)	114, 190
HindII	GTYRAC	2 cut(s)	114, 190
HphI	GGTGA	2 cut(s)	55, 99
Hpy166II	GTNNAC	2 cut(s)	114, 190
Hpy188III	TCNNGA	1 cut(s)	166
Hpy8I	GTNNAC	2 cut(s)	114, 190
HpyAV	CCTTC	2 cut(s)	148, 172
HpyCH4III	ACNGT	1 cut(s)	111
HpyCH4V	TGCA	1 cut(s)	87
HpyF3I	CTNAG	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	162
LpnPI	CCDG	2 cut(s)	73, 186
Lsp1109I	GCAGC	1 cut(s)	59
MalI	GATC	1 cut(s)	164
MboI	GATC	1 cut(s)	162
MboII	GAAGA	1 cut(s)	31
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	5 cut(s)	23, 61, 79, 127, 162
MseI	TTAA	2 cut(s)	9, 259
MvnI	CGCG	1 cut(s)	146
NdeII	GATC	1 cut(s)	162
PkrI	GCNGC	2 cut(s)	49, 251
PspPI	GGNCC	1 cut(s)	224
SaqAI	TTAA	2 cut(s)	9, 259
SatI	GCNGC	2 cut(s)	48, 250
Sau3AI	GATC	1 cut(s)	162
Sau96I	GGNCC	1 cut(s)	224
SetI	ASST	3 cut(s)	71, 119, 183
SinI	GGWCC	1 cut(s)	224
SmlI	CTYRAG	2 cut(s)	166, 236
SmoI	CTYRAG	2 cut(s)	166, 236
Sse9I	AATT	1 cut(s)	136
SsiI	CCGC	2 cut(s)	146, 249
TaaI	ACNGT	1 cut(s)	111
TaqI	TCGA	1 cut(s)	125
TasI	AATT	1 cut(s)	136
TauI	GCSGC	1 cut(s)	252
Tru1I	TTAA	2 cut(s)	9, 259
Tru9I	TTAA	2 cut(s)	9, 259
TscAI	CASTG	1 cut(s)	180
TseI	GCWGC	1 cut(s)	47
TspDTI	ATGAA	1 cut(s)	31
TspRI	CASTG	1 cut(s)	180
VpaK11BI	GGWCC	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.