pycom14g05050

protein C4orf29 homolog

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0013448
Physical Location & Seq
Reverse (-)
4864320 .. 4866739
2420 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 732 bp
ATGGCCTGTGTCGTTCATCTTGCAGGAACTGGAGACCATACATTTGAACGAAGGTTACGTCTTGGTGGACCTTTGCTGAAGGAAAACATTGCTACTATGGTGCTTGAGAGCCCTTTCTATGGACAAAGACGTCCTGTGATGCAGCGTGGGGCAAAACTCATGTGTGTCAGTGACTTGCTTTTATTAGGAAAGGCAACCATTGAAGAAGCTCGCAGTCTCTTGCATTGGCTAGACTGTGAGGCAGGGTTTGGCAAGATGGGTGTTTGTGGACTTAGCATGGGAGGAGTACATGCTGCAATGGTTGGATCACTGCACCCCACACTCGTCGCAACCCTACCTTTTCTCTCTCCACACTCTGCTGTTGTGGCATTCTGTGAGGGAATATTAAAGCATGCAACTGCGTGGGAAGCCCTGAGAGAAGATCTTGCAGTGCAGAAGGCTGCAATGACTCTCGAGGAAGTGAGAGAACGGATGCACAATGTCCTGTCTCTCACGGATGTCACGCGCTTTCCGATTCCAAAAAATCCCAATGCCGTGATATTTGTTTCAGCCACTGATGATGGATACGTCCCGAAACACTCTGTGCTAGAGCTTCAAAAAGCTTGTCCGGGTTCAGAAGTAAGATGGGTCACTGGTGGGCATGTCTCATCGTTCCTTCTCCACAACAGTGAGTTCCGCAGGGCTATTGTTGACGGACTTGACAGATTGCCATGGAAGGAGTCTCCATTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF2048

Protein Analysis

244

Amino Acids

26.6

Weight (kDa)

7.17

Isoelectric Point (pI)

53.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ABHD18 PF09752 1 - 143 3.7e-64 Alpha/beta hydrolase domain containing 18
ABHD18 PF09752 144 - 235 1.1e-32 Alpha/beta hydrolase domain containing 18
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013448)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G12150
fragaria_vesca FvH4_6g22800
malus_domestica MD12G1062300.v1.1
prunus_persica Prupe.7G072500_v2.0.a1 Prupe.7G072500_v2.0.a1
pyrus_communis pycom12g05500 pycom14g05050
rosa_chinensis RchiOBHm_Chr3g0480421
rosa_laevigata RLG00000023483
rosa_multiflora Rmu_sc0002205.1_g000024
rosa_roxburghii Rroxscaffold_6G00401370
rosa_rugosa Rorug03G0183800 Rorug03G0183900
rosa_samantha Rh3AG235300 Rh3BG268200 Rh3CG265300 Rh3DG261200
rosa_wichuraiana Rw3G021120

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 129
AatII GACGTC 1 cut(s) 133
AccII CGCG 1 cut(s) 505
AciI CCGC 1 cut(s) 676
AclWI GGATC 1 cut(s) 313
AcuI CTGAAG 1 cut(s) 98
AcyI GRCGYC 1 cut(s) 130
AdeI CACNNNGTG 1 cut(s) 583
AfaI GTAC 1 cut(s) 288
AfiI CCNNNNNNNGG 1 cut(s) 119
AgsI TTSAA 3 cut(s) 47, 203, 596
AleI CACNNNNGTG 1 cut(s) 666
AluBI AGCT 3 cut(s) 209, 592, 602
AluI AGCT 3 cut(s) 209, 592, 602
Alw26I GTCTC 5 cut(s) 27, 221, 492, 649, 726
AlwI GGATC 1 cut(s) 313
AlwNI CAGNNNCTG 2 cut(s) 29, 554
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 3 cut(s) 142, 293, 440
ArsI GACNNNNNNTTYG 6 cut(s) 26, 43, 58, 75, 589, 621
AspLEI GCGC 1 cut(s) 507
AspS9I GGNCC 1 cut(s) 68
AsuC2I CCSGG 1 cut(s) 609
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 68
BanII GRGCYC 1 cut(s) 113
BbvI GCAGC 3 cut(s) 154, 280, 427
BccI CCATC 3 cut(s) 250, 554, 618
BceAI ACGGC 1 cut(s) 518
BciVI GTATCC 1 cut(s) 557
BcnI CCSGG 1 cut(s) 609
BcoDI GTCTC 5 cut(s) 27, 221, 492, 649, 726
BfaI CTAG 2 cut(s) 230, 587
BfuI GTATCC 1 cut(s) 557
BglII AGATCT 1 cut(s) 421
BisI GCNGC 3 cut(s) 143, 294, 441
BlsI GCNGC 3 cut(s) 144, 295, 442
Bme1390I CCNGG 1 cut(s) 609
Bme18I GGWCC 1 cut(s) 68
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 1 cut(s) 68
BmrFI CCNGG 1 cut(s) 609
BmsI GCATC 2 cut(s) 129, 462
BpmI CTGGAG 1 cut(s) 51
BpuEI CTTGAG 1 cut(s) 125
BpuMI CCSGG 1 cut(s) 609
BsaHI GRCGYC 1 cut(s) 130
BsaI GGTCTC 1 cut(s) 27
BsaJI CCNNGG 1 cut(s) 710
Bsc4I CCNNNNNNNGG 1 cut(s) 119
Bse1I ACTGG 2 cut(s) 34, 637
Bse3DI GCAATG 3 cut(s) 87, 303, 450
BseDI CCNNGG 1 cut(s) 710
BseGI GGATG 2 cut(s) 477, 502
BseLI CCNNNNNNNGG 1 cut(s) 119
BseMI GCAATG 3 cut(s) 87, 303, 450
BseMII CTCAG 1 cut(s) 404
BseNI ACTGG 2 cut(s) 34, 637
BseRI GAGGAG 1 cut(s) 297
BseXI GCAGC 3 cut(s) 154, 280, 427
BsgI GTGCAG 2 cut(s) 296, 452
Bsh1236I CGCG 1 cut(s) 505
BshFI GGCC 1 cut(s) 5
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 1 cut(s) 608
BslFI GGGAC 1 cut(s) 554
BslI CCNNNNNNNGG 1 cut(s) 119
BsmAI GTCTC 5 cut(s) 27, 221, 492, 649, 726
BsmFI GGGAC 1 cut(s) 554
BsmI GAATGC 1 cut(s) 368
BsnI GGCC 1 cut(s) 5
Bso31I GGTCTC 1 cut(s) 27
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 1 cut(s) 113
Bsp143I GATC 2 cut(s) 305, 421
Bsp19I CCATGG 1 cut(s) 710
BspACI CCGC 1 cut(s) 676
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 405
BspFNI CGCG 1 cut(s) 505
BspPI GGATC 1 cut(s) 313
BspTNI GGTCTC 1 cut(s) 27
BsrDI GCAATG 3 cut(s) 87, 303, 450
BsrI ACTGG 2 cut(s) 34, 637
BssECI CCNNGG 1 cut(s) 710
BssMI GATC 2 cut(s) 305, 421
BssNI GRCGYC 1 cut(s) 130
BssT1I CCWWGG 1 cut(s) 710
Bst4CI ACNGT 2 cut(s) 236, 668
BstACI GRCGYC 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 211, 393
BstDEI CTNAG 2 cut(s) 272, 413
BstDSI CCRYGG 1 cut(s) 710
BstF5I GGATG 2 cut(s) 477, 502
BstFNI CGCG 1 cut(s) 505
BstHHI GCGC 1 cut(s) 507
BstKTI GATC 2 cut(s) 308, 424
BstMAI GTCTC 5 cut(s) 27, 221, 492, 649, 726
BstMBI GATC 2 cut(s) 305, 421
BstMWI GCNNNNNNNGC 2 cut(s) 365, 407
BstNSI RCATGY 3 cut(s) 293, 395, 644
BstSCI CCNGG 1 cut(s) 607
BstUI CGCG 1 cut(s) 505
BstV1I GCAGC 3 cut(s) 154, 280, 427
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuI GTATCC 1 cut(s) 557
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 710
BtsCI GGATG 2 cut(s) 477, 502
BtsI GCAGTG 2 cut(s) 308, 435
BtsIMutI CAGTG 6 cut(s) 175, 308, 435, 552, 630, 673
Cac8I GCNNGC 2 cut(s) 211, 393
CaiI CAGNNNCTG 2 cut(s) 29, 554
CfoI GCGC 1 cut(s) 507
Cfr13I GGNCC 1 cut(s) 68
Csp6I GTAC 1 cut(s) 287
CviAII CATG 6 cut(s) 160, 277, 290, 392, 641, 711
CviQI GTAC 1 cut(s) 287
DdeI CTNAG 2 cut(s) 272, 413
DpnI GATC 2 cut(s) 307, 423
DpnII GATC 2 cut(s) 305, 421
DraIII CACNNNGTG 1 cut(s) 583
DrdI GACNNNNNNGTC 1 cut(s) 129
DseDI GACNNNNNNGTC 1 cut(s) 129
Eco130I CCWWGG 1 cut(s) 710
Eco24I GRGCYC 1 cut(s) 113
Eco31I GGTCTC 1 cut(s) 27
Eco47I GGWCC 1 cut(s) 68
Eco57I CTGAAG 1 cut(s) 98
Eco88I CYCGRG 1 cut(s) 452
EcoT14I CCWWGG 1 cut(s) 710
EcoT38I GRGCYC 1 cut(s) 113
ErhI CCWWGG 1 cut(s) 710
FaeI CATG 6 cut(s) 163, 280, 293, 395, 644, 714
FaiI YATR 9 cut(s) 39, 98, 120, 161, 278, 291, 393, 642, 712
FaqI GGGAC 1 cut(s) 554
FatI CATG 6 cut(s) 159, 276, 289, 391, 640, 710
Fnu4HI GCNGC 3 cut(s) 143, 294, 441
FokI GGATG 2 cut(s) 484, 509
FriOI GRGCYC 1 cut(s) 113
Fsp4HI GCNGC 3 cut(s) 143, 294, 441
FspBI CTAG 2 cut(s) 230, 587
GlaI GCGC 1 cut(s) 506
GluI GCNGC 3 cut(s) 143, 294, 441
GsuI CTGGAG 1 cut(s) 51
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 608
HhaI GCGC 1 cut(s) 507
Hin1I GRCGYC 1 cut(s) 130
Hin1II CATG 6 cut(s) 163, 280, 293, 395, 644, 714
Hin6I GCGC 1 cut(s) 505
HinP1I GCGC 1 cut(s) 505
HincII GTYRAC 1 cut(s) 691
HindII GTYRAC 1 cut(s) 691
HindIII AAGCTT 1 cut(s) 600
HinfI GANTC 3 cut(s) 448, 514, 719
HpaII CCGG 1 cut(s) 608
Hpy166II GTNNAC 3 cut(s) 68, 269, 691
Hpy188I TCNGA 2 cut(s) 513, 616
Hpy188III TCNNGA 2 cut(s) 452, 571
Hpy8I GTNNAC 3 cut(s) 68, 269, 691
Hpy99I CGWCG 1 cut(s) 329
HpyAV CCTTC 5 cut(s) 45, 73, 430, 665, 709
HpyCH4III ACNGT 2 cut(s) 236, 668
HpyCH4IV ACGT 3 cut(s) 58, 130, 567
HpyF10VI GCNNNNNNNGC 2 cut(s) 365, 407
HpyF3I CTNAG 2 cut(s) 272, 413
HpySE526I ACGT 3 cut(s) 58, 130, 567
Hsp92I GRCGYC 1 cut(s) 130
Hsp92II CATG 6 cut(s) 163, 280, 293, 395, 644, 714
HspAI GCGC 1 cut(s) 505
Kzo9I GATC 2 cut(s) 305, 421
Lsp1109I GCAGC 3 cut(s) 154, 280, 427
LweI GCATC 2 cut(s) 129, 462
MaeI CTAG 2 cut(s) 230, 587
MaeII ACGT 3 cut(s) 58, 130, 567
MaeIII GTNAC 4 cut(s) 54, 170, 499, 628
MalI GATC 2 cut(s) 307, 423
MboI GATC 2 cut(s) 305, 421
MboII GAAGA 2 cut(s) 215, 431
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 1 cut(s) 113
MlyI GAGTC 2 cut(s) 442, 728
MmeI TCCRAC 1 cut(s) 283
MnlI CCTC 4 cut(s) 232, 275, 370, 448
MseI TTAA 1 cut(s) 386
MslI CAYNNNNRTG 1 cut(s) 666
MspI CCGG 1 cut(s) 608
MspR9I CCNGG 1 cut(s) 609
Mva1269I GAATGC 1 cut(s) 368
MvnI CGCG 1 cut(s) 505
MwoI GCNNNNNNNGC 2 cut(s) 365, 407
NciI CCSGG 1 cut(s) 609
NcoI CCATGG 1 cut(s) 710
NdeII GATC 2 cut(s) 305, 421
NlaIII CATG 6 cut(s) 163, 280, 293, 395, 644, 714
NmuCI GTSAC 3 cut(s) 170, 499, 628
NspI RCATGY 3 cut(s) 293, 395, 644
OliI CACNNNNGTG 1 cut(s) 666
PaeI GCATGC 1 cut(s) 395
PaeR7I CTCGAG 1 cut(s) 452
PcsI WCGNNNNNNNCGW 2 cut(s) 55, 509
PctI GAATGC 1 cut(s) 368
PfeI GAWTC 1 cut(s) 514
PkrI GCNGC 3 cut(s) 144, 295, 442
PleI GAGTC 2 cut(s) 442, 727
PpsI GAGTC 2 cut(s) 442, 727
PspPI GGNCC 1 cut(s) 68
PsrI GAACNNNNNNTAC 2 cut(s) 39, 71
PstNI CAGNNNCTG 2 cut(s) 29, 554
PsuI RGATCY 1 cut(s) 421
RsaI GTAC 1 cut(s) 288
RsaNI GTAC 1 cut(s) 287
RseI CAYNNNNRTG 1 cut(s) 666
SaqAI TTAA 1 cut(s) 386
SatI GCNGC 3 cut(s) 143, 294, 441
Sau3AI GATC 2 cut(s) 305, 421
Sau96I GGNCC 1 cut(s) 68
SchI GAGTC 2 cut(s) 442, 728
ScrFI CCNGG 1 cut(s) 609
SduI GDGCHC 1 cut(s) 113
SetI ASST 9 cut(s) 56, 61, 73, 133, 211, 340, 570, 594, 604
SfaNI GCATC 2 cut(s) 129, 462
Sfr274I CTCGAG 1 cut(s) 452
SinI GGWCC 1 cut(s) 68
SlaI CTCGAG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 666
SmlI CTYRAG 2 cut(s) 104, 452
SmoI CTYRAG 2 cut(s) 104, 452
SphI GCATGC 1 cut(s) 395
SsiI CCGC 1 cut(s) 676
SspI AATATT 1 cut(s) 384
SspMI CTAG 2 cut(s) 230, 587
StyD4I CCNGG 1 cut(s) 607
StyI CCWWGG 1 cut(s) 710
TaaI ACNGT 2 cut(s) 236, 668
TaiI ACGT 3 cut(s) 61, 133, 570
TaqI TCGA 1 cut(s) 453
TatI WGTACW 1 cut(s) 286
TfiI GAWTC 1 cut(s) 514
Tru1I TTAA 1 cut(s) 386
Tru9I TTAA 1 cut(s) 386
TscAI CASTG 6 cut(s) 175, 315, 435, 559, 637, 673
TseFI GTSAC 3 cut(s) 170, 499, 628
TseI GCWGC 3 cut(s) 142, 293, 440
Tsp45I GTSAC 3 cut(s) 170, 499, 628
TspDTI ATGAA 1 cut(s) 5
TspGWI ACGGA 3 cut(s) 484, 509, 708
TspRI CASTG 6 cut(s) 175, 315, 435, 559, 637, 673
VpaK11BI GGWCC 1 cut(s) 68
XceI RCATGY 3 cut(s) 293, 395, 644
XhoI CTCGAG 1 cut(s) 452
XspI CTAG 2 cut(s) 230, 587
ZraI GACGTC 1 cut(s) 131
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.