Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0004646

Physical Location & Seq

Genomic Coordinates Reverse (-)

6793425 .. 6796141

Gene Structure 2717 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGCGACGCCACCGGTTGCGCCGCCGAACATGGAAGGCGGTCCGCCGCCCGTGGTAGCACAGCCACCGGGTACGGACATGACTGATATATGCTTCAAGGACCAGCTATGGTTGAACTCGTATCCTCTCGATCGCAATCTGGTCTTCGATTACTTCGCTATATCTCCGTTCTACGACTGGACTTGTAACAATGAACAGCTTCGTCAACGCTCCATTCACCCCCTCGACCGAGATCAACTCGTGAAAATGATGGGCACTGAATACTGGCTGAGTGAAGTTATGGAGCCGCACCTTTTTGTTTTCCGCAAGCAAAAGAGGGATGGTCCGGAGAAAGTTACACCGATGCTGACTTATTATGTCTTGGATGGTACAATTTACCAAGCACCACAACTGTGCAATGTTTTTGCCGCTCGAATTGGACGTGCTCTCCATTATATATCTAAGGCTTTTACGACTGCTGCCTCAAAGCTGGAGAAGATTGGATACGTTGATTCAGAAAATGAGGCTGCAGCCTTCGAATCAAAGGTTACCAAAGAGACAATTGACTTCAAGGAAGTAAAGCGAGTGGACCTTATTCTTCAATCCTTACAGCGCAAGCTACCACCAGCCCCACCACCGCCACCATTTCCAGAAGGCTATGTTCCCGCCCCAACTGCAGAAGCAGAGAACGGCACTGAAACCCAAGAAGCTGGAGAGACACAAAACCCTCAGATAGATCCCATCATTGATCAAGGCCCAGCTAAAAGAATGAAATTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0001128 GO:0003674 GO:0003712 GO:0003713 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006352 GO:0006355 GO:0006357 GO:0006366 GO:0006367 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0016043 GO:0016070 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022607 GO:0030880 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032774 GO:0032991 GO:0034622 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045935 GO:0046483 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051123 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0055029 GO:0060255 GO:0061695 GO:0065003 GO:0065004 GO:0065007 GO:0070013 GO:0070847 GO:0070897 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090304 GO:0090575 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1902680 GO:1903506 GO:1903508 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med6

Protein Analysis

253

Amino Acids

28.46

Weight (kDa)

5.12

Isoelectric Point (pI)

53.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med6	PF04934	30 - 155	2.7e-39	MED6 mediator sub complex component

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21350 AT3G21350
fragaria_vesca	FvH4_6g32730
malus_domestica	MD14G1079700.v1.1
prunus_persica	Prupe.3G054900_v2.0.a1
pyrus_communis	pycom14g06830
rosa_chinensis	RchiOBHm_Chr2g0141751 RchiOBHm_Chr5g0064381
rosa_laevigata	RLG00000019933 RLG00000035719
rosa_roxburghii	Rroxscaffold_1G00016640 Rroxscaffold_1G00016650 Rroxscaffold_2G00103900
rosa_rugosa	Rorug02G0368600 Rorug02G0368800 Rorug05G0364200
rosa_samantha	Rh2AG420200 Rh2BG429600 Rh2BG430900 Rh2CG407400 Rh2DG439500 Rh2DG440600 Rh5AG422400 Rh5BG438300 Rh5CG460800 Rh5CG460900 Rh5CG461000 Rh5DG451200 Rh5DG451300 Rh5DG451400
rosa_wichuraiana	Rw2G034460

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	410
AccIII	TCCGGA	1 cut(s)	325
AciI	CCGC	9 cut(s)	23, 39, 44, 47, 287, 304, 408, 617, 645
AclWI	GGATC	1 cut(s)	710
AcsI	RAATTY	1 cut(s)	752
AcyI	GRCGYC	1 cut(s)	8
AfaI	GTAC	2 cut(s)	73, 370
AgeI	ACCGGT	1 cut(s)	13
AgsI	TTSAA	4 cut(s)	97, 115, 550, 581
AjiI	CACGTC	1 cut(s)	422
AleI	CACNNNNGTG	1 cut(s)	391
AluBI	AGCT	6 cut(s)	106, 199, 469, 598, 689, 740
AluI	AGCT	6 cut(s)	106, 199, 469, 598, 689, 740
Alw21I	GWGCWC	1 cut(s)	427
Alw26I	GTCTC	2 cut(s)	530, 689
AlwI	GGATC	1 cut(s)	710
Aor13HI	TCCGGA	1 cut(s)	325
AoxI	GGCC	1 cut(s)	733
ApeKI	GCWGC	3 cut(s)	458, 506, 509
ApoI	RAATTY	1 cut(s)	752
AsiGI	ACCGGT	1 cut(s)	13
Asp700I	GAANNNNTTC	1 cut(s)	198
AspLEI	GCGC	2 cut(s)	22, 594
AspS9I	GGNCC	5 cut(s)	41, 100, 323, 568, 734
AsuC2I	CCSGG	1 cut(s)	69
AsuHPI	GGTGA	1 cut(s)	209
AsuII	TTCGAA	1 cut(s)	516
AvaII	GGWCC	4 cut(s)	41, 100, 323, 568
BaeGI	GKGCMC	1 cut(s)	257
BarI	GAAGNNNNNNTAC	2 cut(s)	467, 499
BauI	CACGAG	1 cut(s)	239
BbsI	GAAGAC	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	427
BbvI	GCAGC	3 cut(s)	445, 493, 521
BccI	CCATC	4 cut(s)	244, 314, 359, 728
BceAI	ACGGC	1 cut(s)	685
BciVI	GTATCC	2 cut(s)	132, 476
BclI	TGATCA	1 cut(s)	727
BcnI	CCSGG	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	530, 689
BfmI	CTRYAG	2 cut(s)	507, 654
BfuI	GTATCC	2 cut(s)	132, 476
BisI	GCNGC	7 cut(s)	23, 47, 287, 408, 459, 507, 510
BlsI	GCNGC	7 cut(s)	24, 48, 288, 409, 460, 508, 511
Bme1390I	CCNGG	1 cut(s)	69
Bme18I	GGWCC	4 cut(s)	41, 100, 323, 568
BmgBI	CACGTC	1 cut(s)	422
BmgT120I	GGNCC	5 cut(s)	41, 100, 323, 568, 734
BmiI	GGNNCC	1 cut(s)	285
BmrFI	CCNGG	1 cut(s)	69
BmsI	GCATC	1 cut(s)	333
BpiI	GAAGAC	1 cut(s)	136
BplI	GAGNNNNNCTC	2 cut(s)	222, 254
BpmI	CTGGAG	2 cut(s)	491, 711
Bpu14I	TTCGAA	1 cut(s)	516
BpuMI	CCSGG	1 cut(s)	69
BsaBI	GATNNNNATC	1 cut(s)	135
BsaHI	GRCGYC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	2 cut(s)	13, 325
BsaXI	ACNNNNNCTCC	2 cut(s)	411, 441
Bse118I	RCCGGY	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	182, 269
Bse3DI	GCAATG	1 cut(s)	403
Bse8I	GATNNNNATC	1 cut(s)	135
BseAI	TCCGGA	1 cut(s)	325
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	2 cut(s)	325, 370
BseJI	GATNNNNATC	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	403
BseMII	CTCAG	2 cut(s)	260, 722
BseNI	ACTGG	2 cut(s)	182, 269
BseSI	GKGCMC	1 cut(s)	257
BseXI	GCAGC	3 cut(s)	445, 493, 521
BseYI	CCCAGC	1 cut(s)	736
Bsh1285I	CGRYCG	2 cut(s)	133, 229
BshFI	GGCC	1 cut(s)	735
BshTI	ACCGGT	1 cut(s)	13
BsiEI	CGRYCG	2 cut(s)	133, 229
BsiHKAI	GWGCWC	1 cut(s)	427
BsiSI	CCGG	3 cut(s)	14, 68, 326
BsmAI	GTCTC	2 cut(s)	530, 689
BsnI	GGCC	1 cut(s)	735
Bsp119I	TTCGAA	1 cut(s)	516
Bsp1286I	GDGCHC	2 cut(s)	257, 427
Bsp13I	TCCGGA	1 cut(s)	325
Bsp143I	GATC	4 cut(s)	130, 232, 715, 727
BspACI	CCGC	9 cut(s)	23, 39, 44, 47, 287, 304, 408, 617, 645
BspANI	GGCC	1 cut(s)	735
BspCNI	CTCAG	2 cut(s)	261, 721
BspEI	TCCGGA	1 cut(s)	325
BspLI	GGNNCC	1 cut(s)	285
BspMAI	CTGCAG	2 cut(s)	511, 658
BspPI	GGATC	1 cut(s)	710
BspT104I	TTCGAA	1 cut(s)	516
BsrBI	CCGCTC	1 cut(s)	410
BsrDI	GCAATG	1 cut(s)	403
BsrFI	RCCGGY	1 cut(s)	13
BsrI	ACTGG	2 cut(s)	182, 269
BssAI	RCCGGY	1 cut(s)	13
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	4 cut(s)	130, 232, 715, 727
BssNI	GRCGYC	1 cut(s)	8
BssSI	CACGAG	1 cut(s)	239
Bst2BI	CACGAG	1 cut(s)	239
Bst4CI	ACNGT	1 cut(s)	393
BstACI	GRCGYC	1 cut(s)	8
BstBI	TTCGAA	1 cut(s)	516
BstC8I	GCNNGC	2 cut(s)	308, 596
BstDEI	CTNAG	3 cut(s)	269, 441, 708
BstDSI	CCRYGG	1 cut(s)	51
BstEII	GGTNACC	1 cut(s)	526
BstF5I	GGATG	2 cut(s)	325, 370
BstHHI	GCGC	2 cut(s)	22, 594
BstKTI	GATC	4 cut(s)	133, 235, 718, 730
BstMAI	GTCTC	2 cut(s)	530, 689
BstMBI	GATC	4 cut(s)	130, 232, 715, 727
BstMCI	CGRYCG	2 cut(s)	133, 229
BstMWI	GCNNNNNNNGC	1 cut(s)	653
BstPI	GGTNACC	1 cut(s)	526
BstSCI	CCNGG	1 cut(s)	67
BstSFI	CTRYAG	2 cut(s)	507, 654
BstSLI	GKGCMC	1 cut(s)	257
BstV1I	GCAGC	3 cut(s)	445, 493, 521
BstV2I	GAAGAC	1 cut(s)	136
BstX2I	RGATCY	1 cut(s)	715
BstXI	CCANNNNNNTGG	1 cut(s)	689
BstYI	RGATCY	1 cut(s)	715
BsuI	GTATCC	2 cut(s)	132, 476
BsuRI	GGCC	1 cut(s)	735
BtgI	CCRYGG	1 cut(s)	51
BtrI	CACGTC	1 cut(s)	422
BtsCI	GGATG	2 cut(s)	325, 370
BtsIMutI	CAGTG	2 cut(s)	255, 672
Cac8I	GCNNGC	2 cut(s)	308, 596
CfoI	GCGC	2 cut(s)	22, 594
Cfr10I	RCCGGY	1 cut(s)	13
Cfr13I	GGNCC	5 cut(s)	41, 100, 323, 568, 734
CpoI	CGGWCCG	1 cut(s)	41
CseI	GACGC	1 cut(s)	16
Csp6I	GTAC	2 cut(s)	72, 369
CspAI	ACCGGT	1 cut(s)	13
CspI	CGGWCCG	1 cut(s)	41
CviAII	CATG	2 cut(s)	31, 79
CviQI	GTAC	2 cut(s)	72, 369
DdeI	CTNAG	3 cut(s)	269, 441, 708
DpnI	GATC	4 cut(s)	132, 234, 717, 729
DpnII	GATC	4 cut(s)	130, 232, 715, 727
EciI	GGCGGA	1 cut(s)	33
Eco47I	GGWCC	4 cut(s)	41, 100, 323, 568
Eco91I	GGTNACC	1 cut(s)	526
EcoO65I	GGTNACC	1 cut(s)	526
FaeI	CATG	2 cut(s)	34, 82
FatI	CATG	2 cut(s)	30, 78
FauI	CCCGC	1 cut(s)	652
FbaI	TGATCA	1 cut(s)	727
Fnu4HI	GCNGC	7 cut(s)	23, 47, 287, 408, 459, 507, 510
FokI	GGATG	2 cut(s)	332, 377
Fsp4HI	GCNGC	7 cut(s)	23, 47, 287, 408, 459, 507, 510
GlaI	GCGC	2 cut(s)	21, 593
GluI	GCNGC	7 cut(s)	23, 47, 287, 408, 459, 507, 510
GsaI	CCCAGC	1 cut(s)	740
GsuI	CTGGAG	2 cut(s)	491, 711
HaeIII	GGCC	1 cut(s)	735
HapII	CCGG	3 cut(s)	14, 68, 326
HgaI	GACGC	1 cut(s)	16
HhaI	GCGC	2 cut(s)	22, 594
Hin1I	GRCGYC	1 cut(s)	8
Hin1II	CATG	2 cut(s)	34, 82
Hin6I	GCGC	2 cut(s)	20, 592
HinP1I	GCGC	2 cut(s)	20, 592
HincII	GTYRAC	1 cut(s)	206
HindII	GTYRAC	1 cut(s)	206
HinfI	GANTC	2 cut(s)	491, 518
HpaII	CCGG	3 cut(s)	14, 68, 326
HphI	GGTGA	1 cut(s)	209
Hpy166II	GTNNAC	2 cut(s)	206, 568
Hpy188I	TCNGA	2 cut(s)	496, 711
Hpy188III	TCNNGA	4 cut(s)	128, 241, 326, 629
Hpy8I	GTNNAC	2 cut(s)	206, 568
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	3 cut(s)	29, 523, 626
HpyCH4III	ACNGT	1 cut(s)	393
HpyCH4IV	ACGT	2 cut(s)	421, 486
HpyCH4V	TGCA	3 cut(s)	396, 509, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	653
HpyF3I	CTNAG	3 cut(s)	269, 441, 708
HpySE526I	ACGT	2 cut(s)	421, 486
Hsp92I	GRCGYC	1 cut(s)	8
Hsp92II	CATG	2 cut(s)	34, 82
HspAI	GCGC	2 cut(s)	20, 592
Kpn2I	TCCGGA	1 cut(s)	325
Ksp22I	TGATCA	1 cut(s)	727
Kzo9I	GATC	4 cut(s)	130, 232, 715, 727
LmnI	GCTCC	2 cut(s)	215, 283
Lsp1109I	GCAGC	3 cut(s)	445, 493, 521
LweI	GCATC	1 cut(s)	333
MaeII	ACGT	2 cut(s)	421, 486
MaeIII	GTNAC	3 cut(s)	185, 334, 526
MalI	GATC	4 cut(s)	132, 234, 717, 729
MbiI	CCGCTC	1 cut(s)	410
MboI	GATC	4 cut(s)	130, 232, 715, 727
MboII	GAAGA	3 cut(s)	136, 487, 569
MfeI	CAATTG	1 cut(s)	540
MflI	RGATCY	1 cut(s)	715
MhlI	GDGCHC	2 cut(s)	257, 427
MluCI	AATT	4 cut(s)	372, 414, 540, 752
MnlI	CCTC	6 cut(s)	135, 233, 309, 472, 496, 717
MroI	TCCGGA	1 cut(s)	325
MroXI	GAANNNNTTC	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	391
MspI	CCGG	3 cut(s)	14, 68, 326
MspR9I	CCNGG	1 cut(s)	69
MunI	CAATTG	1 cut(s)	540
MwoI	GCNNNNNNNGC	1 cut(s)	653
NciI	CCSGG	1 cut(s)	69
NdeII	GATC	4 cut(s)	130, 232, 715, 727
NlaIII	CATG	2 cut(s)	34, 82
NlaIV	GGNNCC	1 cut(s)	285
NspV	TTCGAA	1 cut(s)	516
OliI	CACNNNNGTG	1 cut(s)	391
PcsI	WCGNNNNNNNCGW	1 cut(s)	418
PdmI	GAANNNNTTC	1 cut(s)	198
PfeI	GAWTC	2 cut(s)	491, 518
PinAI	ACCGGT	1 cut(s)	13
PkrI	GCNGC	7 cut(s)	24, 48, 288, 409, 460, 508, 511
Ple19I	CGATCG	1 cut(s)	133
PspEI	GGTNACC	1 cut(s)	526
PspFI	CCCAGC	1 cut(s)	736
PspN4I	GGNNCC	1 cut(s)	285
PspPI	GGNCC	5 cut(s)	41, 100, 323, 568, 734
PstI	CTGCAG	2 cut(s)	511, 658
PsuI	RGATCY	1 cut(s)	715
PvuI	CGATCG	1 cut(s)	133
RsaI	GTAC	2 cut(s)	73, 370
RsaNI	GTAC	2 cut(s)	72, 369
RseI	CAYNNNNRTG	1 cut(s)	391
Rsr2I	CGGWCCG	1 cut(s)	41
RsrII	CGGWCCG	1 cut(s)	41
SatI	GCNGC	7 cut(s)	23, 47, 287, 408, 459, 507, 510
Sau3AI	GATC	4 cut(s)	130, 232, 715, 727
Sau96I	GGNCC	5 cut(s)	41, 100, 323, 568, 734
ScrFI	CCNGG	1 cut(s)	69
SduI	GDGCHC	2 cut(s)	257, 427
SfaNI	GCATC	1 cut(s)	333
SfcI	CTRYAG	2 cut(s)	507, 654
SfuI	TTCGAA	1 cut(s)	516
SinI	GGWCC	4 cut(s)	41, 100, 323, 568
SmiMI	CAYNNNNRTG	1 cut(s)	391
Sse9I	AATT	4 cut(s)	372, 414, 540, 752
SsiI	CCGC	9 cut(s)	23, 39, 44, 47, 287, 304, 408, 617, 645
StyD4I	CCNGG	1 cut(s)	67
TaaI	ACNGT	1 cut(s)	393
TaiI	ACGT	2 cut(s)	424, 489
TaqI	TCGA	5 cut(s)	129, 147, 225, 412, 516
TaqII	GACCGA	1 cut(s)	243
TasI	AATT	4 cut(s)	372, 414, 540, 752
TauI	GCSGC	4 cut(s)	25, 49, 289, 410
TfiI	GAWTC	2 cut(s)	491, 518
TscAI	CASTG	2 cut(s)	262, 679
TseI	GCWGC	3 cut(s)	458, 506, 509
TspDTI	ATGAA	1 cut(s)	207
TspGWI	ACGGA	2 cut(s)	89, 156
TspRI	CASTG	2 cut(s)	262, 679
VpaK11BI	GGWCC	4 cut(s)	41, 100, 323, 568
XapI	RAATTY	1 cut(s)	752
XmnI	GAANNNNTTC	1 cut(s)	198

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.