Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0008634

Physical Location & Seq

Genomic Coordinates Forward (+)

6935902 .. 6938684

Gene Structure 2783 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGTTGGAGAAGGAAACAAGGTGACACTCATCCTCCACACAATCCATGGACTAAACTGCAGAACAGAAGGCCACAGCACCACCAAGATAGTTGGCAATTAGGTGTGCCTTACTGGGAAAAGCAATTCTGTTTGATTGTTGGCTCAGTTCCATGGCGGAAGGTCGTAGAAACAAACAAGTATATGTATCTCTATGAAAGCATCATTCAATGGAATGATTCTGCTAATTTGGAGACATTCAACAATGAGAAATACCGCTTTTGGGCAGCAATTAACAGCGTGCCTTGTAACATATCATTGCCAGATCCTGACATTTATATTGATGACATAGATTGGAATTCAAGCATTGATCCTGAACTGATTTTGGACTTGGAAAGGGAACCTGAACCCAACGATGATGAGAACCAAGATAAGGGTGTCACTCTTGTTAATCCTCTCCTTTTAGATCAGTCATTTGCGTGCACCGGATGGGGCGATGCTGAAGAGGACTTCAAAACTAAAGAGAATCTTGCAAACTGGGGCTGTGGATGGGACAATGCTGAGGAGGACTTCAAAAATAAAGAAAATCCTGCAAACTGGGATTGTGGATGGGGTGATGCCGAGGAAGACTTCAAAAAGAAAGAAAATCCTGCAAACTGGGATTGTGGATGGAATGCGGATAATAAAGAAAATCCGTGGGGACCTGATTCTGCCCAGACTCAGAGCAAAGCAGCTGCAGGAGGATGGGACGACAGTTGGAACGGAAGAGCTGGTGGAGCTTCATGGGGAAATTCAGATGGAAATGACAGGAAGAAAGATGGTGGTAGTTGGTACAACTCAAAGCATAAGACCTCTGGATATCAAGGTGACTACCACCATAAACGCGGAGGGTGGAGGAACAAAGGGTGGGGCAACGGTGGGAGAAGGAACACCAGAGTTCATGTTGGTTACGAGAACCTGGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

315

Amino Acids

36.15

Weight (kDa)

4.99

Isoelectric Point (pI)

44.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008634)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G03990 AT5G03990
fragaria_vesca	FvH4_6g24740 FvH4_6g24740
malus_domestica	MD10G1269800.v1.1 MD10G1269900.v1.1 MD12G1086400.v1.1 MD14G1080400.v1.1
prunus_persica	Prupe.4G071800_v2.0.a1 Prupe.7G050400_v2.0.a1 Prupe.7G050400_v2.0.a1
pyrus_communis	pycom12g07270 pycom14g06970
rosa_chinensis	RchiOBHm_Chr3g0484321
rosa_laevigata	RLG00000023232
rosa_multiflora	Rmu_sc0000295.1_g000013
rosa_roxburghii	Rroxscaffold_6G00397780
rosa_rugosa	Rorug03G0210800
rosa_samantha	Rh3AG259900 Rh3BG296500 Rh3CG294000 Rh3DG290000
rosa_wichuraiana	Rw3G023440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	864
AciI	CCGC	4 cut(s)	157, 256, 656, 864
AclWI	GGATC	2 cut(s)	299, 344
AcsI	RAATTY	2 cut(s)	337, 769
AcuI	CTGAAG	1 cut(s)	501
AfaI	GTAC	1 cut(s)	812
AfiI	CCNNNNNNNGG	2 cut(s)	262, 412
AgsI	TTSAA	6 cut(s)	209, 241, 342, 493, 553, 613
AjnI	CCWGG	1 cut(s)	936
AluBI	AGCT	3 cut(s)	713, 749, 758
AluI	AGCT	3 cut(s)	713, 749, 758
Alw21I	GWGCWC	1 cut(s)	464
Alw26I	GTCTC	1 cut(s)	227
Alw44I	GTGCAC	1 cut(s)	460
AlwI	GGATC	2 cut(s)	299, 344
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	1 cut(s)	71
ApaLI	GTGCAC	1 cut(s)	460
ApeKI	GCWGC	3 cut(s)	266, 710, 713
ApoI	RAATTY	2 cut(s)	337, 769
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	3 cut(s)	35, 605, 857
AvaII	GGWCC	1 cut(s)	680
BaeGI	GKGCMC	1 cut(s)	464
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	464
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	3 cut(s)	278, 700, 722
BccI	CCATC	7 cut(s)	462, 522, 582, 642, 717, 770, 791
BciT130I	CCWGG	1 cut(s)	938
BcoDI	GTCTC	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	59, 714
BisI	GCNGC	3 cut(s)	267, 711, 714
BlsI	GCNGC	3 cut(s)	268, 712, 715
Bme1390I	CCNGG	1 cut(s)	938
Bme18I	GGWCC	1 cut(s)	680
BmgT120I	GGNCC	1 cut(s)	680
BmiI	GGNNCC	2 cut(s)	381, 681
BmrFI	CCNGG	1 cut(s)	938
BmrI	ACTGGG	4 cut(s)	124, 526, 586, 646
BmsI	GCATC	3 cut(s)	210, 466, 586
BmuI	ACTGGG	4 cut(s)	124, 526, 586, 646
BpiI	GAAGAC	1 cut(s)	612
Bpu10I	CCTNAGC	1 cut(s)	540
BsaJI	CCNNGG	4 cut(s)	47, 152, 600, 674
BsaWI	WCCGGW	1 cut(s)	464
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bsc4I	CCNNNNNNNGG	2 cut(s)	262, 412
Bse1I	ACTGG	4 cut(s)	119, 521, 581, 641
Bse3DI	GCAATG	1 cut(s)	296
BseBI	CCWGG	1 cut(s)	938
BseDI	CCNNGG	4 cut(s)	47, 152, 600, 674
BseGI	GGATG	6 cut(s)	31, 473, 533, 593, 653, 728
BseLI	CCNNNNNNNGG	2 cut(s)	262, 412
BseMI	GCAATG	1 cut(s)	296
BseMII	CTCAG	3 cut(s)	159, 531, 713
BseNI	ACTGG	4 cut(s)	119, 521, 581, 641
BseRI	GAGGAG	1 cut(s)	557
BseSI	GKGCMC	1 cut(s)	464
BseXI	GCAGC	3 cut(s)	278, 700, 722
Bsh1236I	CGCG	1 cut(s)	864
BshFI	GGCC	1 cut(s)	73
BsiHKAI	GWGCWC	1 cut(s)	464
BsiSI	CCGG	1 cut(s)	465
BslFI	GGGAC	3 cut(s)	545, 693, 740
BslI	CCNNNNNNNGG	2 cut(s)	262, 412
BsmAI	GTCTC	1 cut(s)	227
BsmFI	GGGAC	3 cut(s)	545, 693, 740
BsmI	GAATGC	1 cut(s)	658
BsnI	GGCC	1 cut(s)	73
Bsp1286I	GDGCHC	1 cut(s)	464
Bsp143I	GATC	3 cut(s)	304, 349, 445
Bsp19I	CCATGG	2 cut(s)	47, 152
BspACI	CCGC	4 cut(s)	157, 256, 656, 864
BspANI	GGCC	1 cut(s)	73
BspCNI	CTCAG	3 cut(s)	158, 532, 712
BspFNI	CGCG	1 cut(s)	864
BspLI	GGNNCC	2 cut(s)	381, 681
BspMAI	CTGCAG	2 cut(s)	63, 718
BspPI	GGATC	2 cut(s)	299, 344
BspQI	GCTCTTC	1 cut(s)	739
BsrDI	GCAATG	1 cut(s)	296
BsrI	ACTGG	4 cut(s)	119, 521, 581, 641
BssECI	CCNNGG	4 cut(s)	47, 152, 600, 674
BssMI	GATC	3 cut(s)	304, 349, 445
BssT1I	CCWWGG	2 cut(s)	47, 152
Bst2UI	CCWGG	1 cut(s)	938
Bst4CI	ACNGT	2 cut(s)	734, 896
Bst6I	CTCTTC	2 cut(s)	477, 739
BstC8I	GCNNGC	2 cut(s)	281, 460
BstDEI	CTNAG	3 cut(s)	145, 540, 699
BstDSI	CCRYGG	3 cut(s)	47, 152, 674
BstF5I	GGATG	6 cut(s)	31, 473, 533, 593, 653, 728
BstFNI	CGCG	1 cut(s)	864
BstKTI	GATC	3 cut(s)	307, 352, 448
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	3 cut(s)	304, 349, 445
BstMWI	GCNNNNNNNGC	1 cut(s)	755
BstNI	CCWGG	1 cut(s)	938
BstSCI	CCNGG	1 cut(s)	936
BstSFI	CTRYAG	2 cut(s)	59, 714
BstSLI	GKGCMC	1 cut(s)	464
BstUI	CGCG	1 cut(s)	864
BstV1I	GCAGC	3 cut(s)	278, 700, 722
BstV2I	GAAGAC	1 cut(s)	612
BstX2I	RGATCY	1 cut(s)	304
BstYI	RGATCY	1 cut(s)	304
BsuRI	GGCC	1 cut(s)	73
BtgI	CCRYGG	3 cut(s)	47, 152, 674
BtgZI	GCGATG	1 cut(s)	489
BtsCI	GGATG	6 cut(s)	31, 473, 533, 593, 653, 728
Cac8I	GCNNGC	2 cut(s)	281, 460
CaiI	CAGNNNCTG	1 cut(s)	308
Cfr13I	GGNCC	1 cut(s)	680
Csp6I	GTAC	1 cut(s)	811
CviAII	CATG	4 cut(s)	48, 153, 762, 920
CviJI	RGCY	6 cut(s)	73, 144, 522, 713, 749, 758
CviKI_1	RGCY	6 cut(s)	73, 144, 522, 713, 749, 758
CviQI	GTAC	1 cut(s)	811
DdeI	CTNAG	3 cut(s)	145, 540, 699
DpnI	GATC	3 cut(s)	306, 351, 447
DpnII	GATC	3 cut(s)	304, 349, 445
Eam1104I	CTCTTC	2 cut(s)	477, 739
EarI	CTCTTC	2 cut(s)	477, 739
EciI	GGCGGA	1 cut(s)	172
Eco130I	CCWWGG	2 cut(s)	47, 152
Eco32I	GATATC	1 cut(s)	839
Eco47I	GGWCC	1 cut(s)	680
Eco57I	CTGAAG	1 cut(s)	501
EcoO109I	RGGNCCY	1 cut(s)	680
EcoRI	GAATTC	1 cut(s)	337
EcoRII	CCWGG	1 cut(s)	936
EcoRV	GATATC	1 cut(s)	839
EcoT14I	CCWWGG	2 cut(s)	47, 152
ErhI	CCWWGG	2 cut(s)	47, 152
FaeI	CATG	4 cut(s)	51, 156, 765, 923
FalI	AAGNNNNNCTT	2 cut(s)	492, 524
FaqI	GGGAC	3 cut(s)	545, 693, 740
FatI	CATG	4 cut(s)	47, 152, 761, 919
Fnu4HI	GCNGC	3 cut(s)	267, 711, 714
FokI	GGATG	6 cut(s)	18, 480, 540, 600, 660, 735
Fsp4HI	GCNGC	3 cut(s)	267, 711, 714
GluI	GCNGC	3 cut(s)	267, 711, 714
HaeIII	GGCC	1 cut(s)	73
HapII	CCGG	1 cut(s)	465
Hin1II	CATG	4 cut(s)	51, 156, 765, 923
HinfI	GANTC	4 cut(s)	218, 505, 686, 697
HpaII	CCGG	1 cut(s)	465
HphI	GGTGA	3 cut(s)	35, 605, 857
Hpy166II	GTNNAC	1 cut(s)	462
Hpy188I	TCNGA	2 cut(s)	702, 775
Hpy188III	TCNNGA	3 cut(s)	308, 353, 834
Hpy8I	GTNNAC	1 cut(s)	462
HpyAV	CCTTC	4 cut(s)	6, 63, 154, 897
HpyCH4III	ACNGT	2 cut(s)	734, 896
HpyCH4V	TGCA	6 cut(s)	61, 462, 512, 572, 632, 716
HpyF10VI	GCNNNNNNNGC	1 cut(s)	755
HpyF3I	CTNAG	3 cut(s)	145, 540, 699
Hsp92II	CATG	4 cut(s)	51, 156, 765, 923
Kzo9I	GATC	3 cut(s)	304, 349, 445
LguI	GCTCTTC	1 cut(s)	739
LmnI	GCTCC	1 cut(s)	755
Lsp1109I	GCAGC	3 cut(s)	278, 700, 722
LweI	GCATC	3 cut(s)	210, 466, 586
MaeIII	GTNAC	5 cut(s)	23, 287, 418, 845, 926
MalI	GATC	3 cut(s)	306, 351, 447
MboI	GATC	3 cut(s)	304, 349, 445
MboII	GAAGA	4 cut(s)	494, 617, 756, 802
MflI	RGATCY	1 cut(s)	304
MhlI	GDGCHC	1 cut(s)	464
MluCI	AATT	6 cut(s)	98, 125, 226, 270, 337, 769
MlyI	GAGTC	1 cut(s)	691
MmeI	TCCRAC	1 cut(s)	716
MseI	TTAA	2 cut(s)	273, 429
MslI	CAYNNNNRTG	1 cut(s)	457
MspA1I	CMGCKG	1 cut(s)	713
MspI	CCGG	1 cut(s)	465
MspR9I	CCNGG	1 cut(s)	938
Mva1269I	GAATGC	1 cut(s)	658
MvaI	CCWGG	1 cut(s)	938
MvnI	CGCG	1 cut(s)	864
MwoI	GCNNNNNNNGC	1 cut(s)	755
NcoI	CCATGG	2 cut(s)	47, 152
NdeII	GATC	3 cut(s)	304, 349, 445
NlaIII	CATG	4 cut(s)	51, 156, 765, 923
NlaIV	GGNNCC	2 cut(s)	381, 681
NmeAIII	GCCGAG	1 cut(s)	625
NmuCI	GTSAC	3 cut(s)	23, 418, 845
PciSI	GCTCTTC	1 cut(s)	739
PctI	GAATGC	1 cut(s)	658
PfeI	GAWTC	3 cut(s)	218, 505, 686
PkrI	GCNGC	3 cut(s)	268, 712, 715
PleI	GAGTC	1 cut(s)	691
PpsI	GAGTC	1 cut(s)	691
PpuMI	RGGWCCY	1 cut(s)	680
Psp5II	RGGWCCY	1 cut(s)	680
Psp6I	CCWGG	1 cut(s)	936
PspGI	CCWGG	1 cut(s)	936
PspN4I	GGNNCC	2 cut(s)	381, 681
PspPI	GGNCC	1 cut(s)	680
PspPPI	RGGWCCY	1 cut(s)	680
PstI	CTGCAG	2 cut(s)	63, 718
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	1 cut(s)	304
PvuII	CAGCTG	1 cut(s)	713
RsaI	GTAC	1 cut(s)	812
RsaNI	GTAC	1 cut(s)	811
RseI	CAYNNNNRTG	1 cut(s)	457
SapI	GCTCTTC	1 cut(s)	739
SaqAI	TTAA	2 cut(s)	273, 429
SatI	GCNGC	3 cut(s)	267, 711, 714
Sau3AI	GATC	3 cut(s)	304, 349, 445
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	1 cut(s)	691
ScrFI	CCNGG	1 cut(s)	938
SduI	GDGCHC	1 cut(s)	464
SfaNI	GCATC	3 cut(s)	210, 466, 586
SfcI	CTRYAG	2 cut(s)	59, 714
SinI	GGWCC	1 cut(s)	680
SmiMI	CAYNNNNRTG	1 cut(s)	457
Sse9I	AATT	6 cut(s)	98, 125, 226, 270, 337, 769
SsiI	CCGC	4 cut(s)	157, 256, 656, 864
StyD4I	CCNGG	1 cut(s)	936
StyI	CCWWGG	2 cut(s)	47, 152
TaaI	ACNGT	2 cut(s)	734, 896
TasI	AATT	6 cut(s)	98, 125, 226, 270, 337, 769
TfiI	GAWTC	3 cut(s)	218, 505, 686
Tru1I	TTAA	2 cut(s)	273, 429
Tru9I	TTAA	2 cut(s)	273, 429
TseFI	GTSAC	3 cut(s)	23, 418, 845
TseI	GCWGC	3 cut(s)	266, 710, 713
Tsp45I	GTSAC	3 cut(s)	23, 418, 845
TspDTI	ATGAA	3 cut(s)	210, 750, 908
TspGWI	ACGGA	2 cut(s)	663, 756
VneI	GTGCAC	1 cut(s)	460
VpaK11BI	GGWCC	1 cut(s)	680
XapI	RAATTY	2 cut(s)	337, 769
XcmI	CCANNNNNNNNNTGG	1 cut(s)	45

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.