Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006307

Physical Location & Seq

Genomic Coordinates Reverse (-)

7042455 .. 7043033

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCACTGGTTTCCAGAGGATCAAGATTGAATCCCAACGCCCCTCTCTTTATCCCTGCGGCTCTCCGGCAGGTGGAGGATTTCTCCCCTGAATGGTGGCAACTGGTCACAACCTCCACATGGTACCACGACTACTGGCTCAGTCAGCAGGGTGACGATGGCTTCTATGATGATACCCACAATGAAGTTGACAATGTCGCCGATTTGCTTCCAGAGACCTTTGATCTCGATGTTGGTGATGAGTTCTCCGGTCTAGAAGCTCAGTTTGAAGAGTTCCTTCAGATGTCTCAGACCGAAGGTAAAGATGCAGGGTTGGAGAAGGGCTCCGCGGTCTTGAAGAATTTGAAGTCACTGGAGGACAGACGTCCGAAGTCCCTGGTGGAGCCAAGGAGGTATGCTGAGAAGCCAGCAAAGCATGTGAGCCCGAAATGCAGCCCCCGTTTCATCCAGCAGCCTCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006950 GO:0008150 GO:0009314 GO:0009414 GO:0009415 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009644 GO:0010035 GO:0042221 GO:0043207 GO:0044424 GO:0044464 GO:0050896 GO:0051704 GO:0051707 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PAM2

Protein Analysis

154

Amino Acids

17.52

Weight (kDa)

4.79

Isoelectric Point (pI)

55.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006307)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G41430 AT2G41430 AT2G41430 AT2G41430 AT2G41430
fragaria_vesca	FvH4_6g24790 FvH4_6g24790
malus_domestica	MD14G1081500.v1.1
prunus_persica	Prupe.7G049200_v2.0.a1 Prupe.7G049200_v2.0.a1
pyrus_communis	pycom12g07430 pycom14g07080
rosa_chinensis	RchiOBHm_Chr2g0124241
rosa_laevigata	RLG00000018791 RLG00000018799
rosa_multiflora	Rmu_co8344463.1_g000001 Rmu_sc0002968.1_g000006 Rmu_sc0005472.1_g000018
rosa_roxburghii	Rroxscaffold_2G00120020
rosa_rugosa	Rorug02G0250400 Rorug02G0250400 Rorug02G0250500.1
rosa_samantha	Rh2BG317800 Rh2CG296200 Rh2CG301200 Rh2DG333300
rosa_wichuraiana	Rw2G024910

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	61
AatII	GACGTC	1 cut(s)	367
Acc36I	ACCTGC	1 cut(s)	61
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	123
AccII	CGCG	1 cut(s)	329
AciI	CCGC	3 cut(s)	59, 327, 329
AclWI	GGATC	1 cut(s)	28
AcsI	RAATTY	1 cut(s)	340
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	1 cut(s)	364
AfaI	GTAC	1 cut(s)	125
AfiI	CCNNNNNNNGG	3 cut(s)	73, 93, 120
AgsI	TTSAA	4 cut(s)	31, 269, 337, 346
AjnI	CCWGG	1 cut(s)	375
AluBI	AGCT	1 cut(s)	260
AluI	AGCT	1 cut(s)	260
Alw26I	GTCTC	2 cut(s)	209, 291
AlwI	GGATC	1 cut(s)	28
ApeKI	GCWGC	2 cut(s)	432, 451
ApoI	RAATTY	1 cut(s)	340
Asp718I	GGTACC	1 cut(s)	123
AsuHPI	GGTGA	2 cut(s)	164, 248
BanI	GGYRCC	1 cut(s)	123
BanII	GRGCYC	2 cut(s)	326, 425
BbvI	GCAGC	1 cut(s)	444
BccI	CCATC	1 cut(s)	152
BciT130I	CCWGG	1 cut(s)	377
BcoDI	GTCTC	2 cut(s)	209, 291
BfaI	CTAG	1 cut(s)	254
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	3 cut(s)	60, 433, 452
BlsI	GCNGC	3 cut(s)	61, 434, 453
Bme1390I	CCNGG	1 cut(s)	377
BmiI	GGNNCC	3 cut(s)	125, 325, 384
BmrFI	CCNGG	1 cut(s)	377
BmsI	GCATC	1 cut(s)	295
BoxI	GACNNNNGTC	1 cut(s)	363
BplI	GAGNNNNNCTC	4 cut(s)	68, 100, 308, 340
BpmI	CTGGAG	1 cut(s)	374
BsaHI	GRCGYC	1 cut(s)	364
BsaI	GGTCTC	1 cut(s)	209
BsaJI	CCNNGG	3 cut(s)	327, 375, 386
BsaWI	WCCGGW	1 cut(s)	248
Bsc4I	CCNNNNNNNGG	3 cut(s)	73, 93, 120
Bse1I	ACTGG	4 cut(s)	12, 108, 140, 357
BseBI	CCWGG	1 cut(s)	377
BseDI	CCNNGG	3 cut(s)	327, 375, 386
BseGI	GGATG	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	73, 93, 120
BseMII	CTCAG	4 cut(s)	154, 275, 302, 390
BseNI	ACTGG	4 cut(s)	12, 108, 140, 357
BseXI	GCAGC	1 cut(s)	444
Bsh1236I	CGCG	1 cut(s)	329
BshNI	GGYRCC	1 cut(s)	123
BsiSI	CCGG	2 cut(s)	67, 249
BslFI	GGGAC	1 cut(s)	358
BslI	CCNNNNNNNGG	3 cut(s)	73, 93, 120
BsmAI	GTCTC	2 cut(s)	209, 291
BsmFI	GGGAC	1 cut(s)	358
Bso31I	GGTCTC	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	326, 425
Bsp143I	GATC	2 cut(s)	20, 223
BspACI	CCGC	3 cut(s)	59, 327, 329
BspCNI	CTCAG	4 cut(s)	153, 274, 301, 391
BspFNI	CGCG	1 cut(s)	329
BspLI	GGNNCC	3 cut(s)	125, 325, 384
BspMI	ACCTGC	1 cut(s)	61
BspPI	GGATC	1 cut(s)	28
BspT107I	GGYRCC	1 cut(s)	123
BspTNI	GGTCTC	1 cut(s)	209
BsrI	ACTGG	4 cut(s)	12, 108, 140, 357
BssECI	CCNNGG	3 cut(s)	327, 375, 386
BssMI	GATC	2 cut(s)	20, 223
BssNI	GRCGYC	1 cut(s)	364
BssT1I	CCWWGG	1 cut(s)	386
Bst2UI	CCWGG	1 cut(s)	377
Bst6I	CTCTTC	1 cut(s)	264
BstACI	GRCGYC	1 cut(s)	364
BstC8I	GCNNGC	1 cut(s)	408
BstDEI	CTNAG	4 cut(s)	140, 261, 288, 399
BstDSI	CCRYGG	1 cut(s)	327
BstF5I	GGATG	1 cut(s)	444
BstFNI	CGCG	1 cut(s)	329
BstKTI	GATC	2 cut(s)	23, 226
BstMAI	GTCTC	2 cut(s)	209, 291
BstMBI	GATC	2 cut(s)	20, 223
BstMWI	GCNNNNNNNGC	3 cut(s)	145, 412, 429
BstNI	CCWGG	1 cut(s)	377
BstNSI	RCATGY	1 cut(s)	419
BstPAI	GACNNNNGTC	1 cut(s)	363
BstSCI	CCNGG	1 cut(s)	375
BstUI	CGCG	1 cut(s)	329
BstV1I	GCAGC	1 cut(s)	444
BtgI	CCRYGG	1 cut(s)	327
BtsCI	GGATG	1 cut(s)	444
BtsIMutI	CAGTG	2 cut(s)	5, 350
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	408
Cfr42I	CCGCGG	1 cut(s)	330
Csp6I	GTAC	1 cut(s)	124
CviAII	CATG	2 cut(s)	120, 416
CviQI	GTAC	1 cut(s)	124
DdeI	CTNAG	4 cut(s)	140, 261, 288, 399
DpnI	GATC	2 cut(s)	22, 225
DpnII	GATC	2 cut(s)	20, 223
Eam1104I	CTCTTC	1 cut(s)	264
EarI	CTCTTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	386
Eco24I	GRGCYC	2 cut(s)	326, 425
Eco31I	GGTCTC	1 cut(s)	209
Eco57I	CTGAAG	1 cut(s)	263
EcoRII	CCWGG	1 cut(s)	375
EcoT14I	CCWWGG	1 cut(s)	386
EcoT38I	GRGCYC	2 cut(s)	326, 425
ErhI	CCWWGG	1 cut(s)	386
FaeI	CATG	2 cut(s)	123, 419
FaiI	YATR	4 cut(s)	121, 168, 396, 417
FalI	AAGNNNNNCTT	2 cut(s)	261, 293
FaqI	GGGAC	1 cut(s)	358
FatI	CATG	2 cut(s)	119, 415
Fnu4HI	GCNGC	3 cut(s)	60, 433, 452
FokI	GGATG	1 cut(s)	431
FriOI	GRGCYC	2 cut(s)	326, 425
Fsp4HI	GCNGC	3 cut(s)	60, 433, 452
FspBI	CTAG	1 cut(s)	254
GluI	GCNGC	3 cut(s)	60, 433, 452
GsuI	CTGGAG	1 cut(s)	374
HapII	CCGG	2 cut(s)	67, 249
Hin1I	GRCGYC	1 cut(s)	364
Hin1II	CATG	2 cut(s)	123, 419
HincII	GTYRAC	1 cut(s)	190
HindII	GTYRAC	1 cut(s)	190
HinfI	GANTC	1 cut(s)	31
HpaII	CCGG	2 cut(s)	67, 249
HphI	GGTGA	2 cut(s)	164, 248
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	3 cut(s)	282, 291, 369
Hpy188III	TCNNGA	6 cut(s)	15, 24, 212, 227, 254, 334
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	3 cut(s)	287, 290, 313
HpyCH4IV	ACGT	1 cut(s)	364
HpyCH4V	TGCA	2 cut(s)	308, 432
HpyF10VI	GCNNNNNNNGC	3 cut(s)	145, 412, 429
HpyF3I	CTNAG	4 cut(s)	140, 261, 288, 399
HpySE526I	ACGT	1 cut(s)	364
Hsp92I	GRCGYC	1 cut(s)	364
Hsp92II	CATG	2 cut(s)	123, 419
KpnI	GGTACC	1 cut(s)	127
KspI	CCGCGG	1 cut(s)	330
Kzo9I	GATC	2 cut(s)	20, 223
LmnI	GCTCC	2 cut(s)	329, 382
Lsp1109I	GCAGC	1 cut(s)	444
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	254
MaeII	ACGT	1 cut(s)	364
MaeIII	GTNAC	3 cut(s)	106, 152, 348
MalI	GATC	2 cut(s)	22, 225
MboI	GATC	2 cut(s)	20, 223
MboII	GAAGA	2 cut(s)	281, 349
MhlI	GDGCHC	2 cut(s)	326, 425
MluCI	AATT	1 cut(s)	340
MmeI	TCCRAC	1 cut(s)	294
MnlI	CCTC	6 cut(s)	11, 54, 70, 124, 349, 384
MspA1I	CMGCKG	1 cut(s)	329
MspI	CCGG	2 cut(s)	67, 249
MspR9I	CCNGG	1 cut(s)	377
MvaI	CCWGG	1 cut(s)	377
MvnI	CGCG	1 cut(s)	329
MwoI	GCNNNNNNNGC	3 cut(s)	145, 412, 429
NdeII	GATC	2 cut(s)	20, 223
NlaIII	CATG	2 cut(s)	123, 419
NlaIV	GGNNCC	3 cut(s)	125, 325, 384
NmuCI	GTSAC	3 cut(s)	106, 152, 348
NspI	RCATGY	1 cut(s)	419
PaqCI	CACCTGC	1 cut(s)	61
PfeI	GAWTC	1 cut(s)	31
PflFI	GACNNNGTC	1 cut(s)	194
PkrI	GCNGC	3 cut(s)	61, 434, 453
PshAI	GACNNNNGTC	1 cut(s)	363
Psp6I	CCWGG	1 cut(s)	375
PspGI	CCWGG	1 cut(s)	375
PspN4I	GGNNCC	3 cut(s)	125, 325, 384
PsyI	GACNNNGTC	1 cut(s)	194
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
SacII	CCGCGG	1 cut(s)	330
SatI	GCNGC	3 cut(s)	60, 433, 452
Sau3AI	GATC	2 cut(s)	20, 223
ScrFI	CCNGG	1 cut(s)	377
SduI	GDGCHC	2 cut(s)	326, 425
SetI	ASST	7 cut(s)	75, 116, 221, 262, 301, 367, 395
SfaNI	GCATC	1 cut(s)	295
Sfr303I	CCGCGG	1 cut(s)	330
SgrBI	CCGCGG	1 cut(s)	330
Sse9I	AATT	1 cut(s)	340
SsiI	CCGC	3 cut(s)	59, 327, 329
SspMI	CTAG	1 cut(s)	254
StyD4I	CCNGG	1 cut(s)	375
StyI	CCWWGG	1 cut(s)	386
TaiI	ACGT	1 cut(s)	367
TaqI	TCGA	1 cut(s)	228
TaqII	GACCGA	1 cut(s)	308
TasI	AATT	1 cut(s)	340
TauI	GCSGC	1 cut(s)	62
TfiI	GAWTC	1 cut(s)	31
TscAI	CASTG	2 cut(s)	12, 357
TseFI	GTSAC	3 cut(s)	106, 152, 348
TseI	GCWGC	2 cut(s)	432, 451
Tsp45I	GTSAC	3 cut(s)	106, 152, 348
TspDTI	ATGAA	2 cut(s)	198, 433
TspRI	CASTG	2 cut(s)	12, 357
Tth111I	GACNNNGTC	1 cut(s)	194
XapI	RAATTY	1 cut(s)	340
XbaI	TCTAGA	1 cut(s)	253
XceI	RCATGY	1 cut(s)	419
XspI	CTAG	1 cut(s)	254
ZraI	GACGTC	1 cut(s)	365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.