pycom14g07830

Amino acid transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0011484
Physical Location & Seq
Forward (+)
8117747 .. 8120169
2423 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 801 bp
ATGCACTTATTTGGAATAGTAACTGCCCTCATTGTTCTGCCAAGTGTTTGGTTGAAAGATCTTCGTCTTATTTCATTCCTTTCAGCTGGTGGGGTCATTGTCACAGTTTTGATTGTTCTATGCGTGATTTTACTTGGTACAGCTGGTGGGGTTGGGTTCCATCACACCCCGCCAGCAGTGCACTGGAATGGAATTCCACTTGTAATTGGTGTGTATGGGTTTTGCTTTGCCGGGCATACTGTCTTTCCAAATATATACCAATCCATGGCAGACAGACGACAATTTAGCAAGGCGCTAATAATATGCTTTATCTTGTGCGTTCTGTTATATGGGAGTGTTGCAATCATGGGATATCTCATGTTTGGTGAACGCACTCTGTCACAGATTACTTTGAATATGCCACCACATGCTTTTCTGTCCCAAGTTGCACTGTGGACAACAGTTATCAATCCGTTGAATGCCCTGTTGATGAACCCGTTAGCAAGGAGTATTGAGGAGCTGCTGCCAGTTACAATTTCTAACAGTTCCTGGTGTTTCATTCTTTTAAGAACAGCACTCGTCATTTCTACTGTTGTTTCCGCCTTTCTTATCCCGTTCTTTGGTCTTGTGATGGCTTTGATAGGCTCTCTACTCAGTATTCTTGTGTCAGTAATAGTTCCATCACTATGCTTTCTGAGAATAGCTGGAAGGAAAGCTACAAGGACACAGGTTGTTTCGAGTATCACGATCTCCACTTTGGGCATCATTGCTGCAGCCCTGGGTACATATTCTGCACTGTCAAAAATTGTGAATCACTATTGA

Protein Analysis

267

Amino Acids

28.7

Weight (kDa)

9.5

Isoelectric Point (pI)

34.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 3 - 258 8.1e-35 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011484)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G41190 AT2G41190
fragaria_vesca FvH4_6g25440
malus_domestica MD14G1088200.v1.1
prunus_persica Prupe.7G038500_v2.0.a1
pyrus_communis pycom14g07820 pycom14g07830
rosa_chinensis RchiOBHm_Chr2g0125581 RchiOBHm_Chr2g0125591
rosa_laevigata RLG00000018871
rosa_multiflora Rmu_sc0002643.1_g000007 Rmu_sc0014914.1_g000001
rosa_roxburghii Rroxscaffold_2G00117920
rosa_rugosa Rorug02G0258100
rosa_samantha Rh2AG316700 Rh2BG324400 Rh2BG324500 Rh2CG306500 Rh2DG342800
rosa_wichuraiana Rw2G025560

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 265
AciI CCGC 2 cut(s) 170, 579
AcsI RAATTY 1 cut(s) 192
AfaI GTAC 2 cut(s) 139, 763
AfiI CCNNNNNNNGG 2 cut(s) 265, 599
AgsI TTSAA 3 cut(s) 55, 394, 457
AjnI CCWGG 2 cut(s) 527, 756
AluBI AGCT 5 cut(s) 86, 143, 499, 683, 695
AluI AGCT 5 cut(s) 86, 143, 499, 683, 695
Alw21I GWGCWC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 179
AlwNI CAGNNNCTG 1 cut(s) 528
ApaLI GTGCAC 1 cut(s) 179
ApeKI GCWGC 4 cut(s) 499, 502, 749, 752
ApoI RAATTY 1 cut(s) 192
AspLEI GCGC 1 cut(s) 295
AsuC2I CCSGG 1 cut(s) 232
AsuHPI GGTGA 1 cut(s) 377
BaeGI GKGCMC 1 cut(s) 183
BarI GAAGNNNNNNTAC 2 cut(s) 679, 711
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 4 cut(s) 486, 489, 736, 764
BccI CCATC 3 cut(s) 168, 604, 667
BciT130I CCWGG 2 cut(s) 529, 758
BcnI CCSGG 1 cut(s) 232
BfmI CTRYAG 1 cut(s) 750
BfoI RGCGCY 1 cut(s) 296
BglII AGATCT 1 cut(s) 58
BisI GCNGC 4 cut(s) 500, 503, 750, 753
BlsI GCNGC 4 cut(s) 501, 504, 751, 754
Bme1390I CCNGG 3 cut(s) 232, 529, 758
BmiI GGNNCC 1 cut(s) 158
BmrFI CCNGG 3 cut(s) 232, 529, 758
BmsI GCATC 1 cut(s) 750
BpuMI CCSGG 1 cut(s) 232
BsaJI CCNNGG 3 cut(s) 264, 756, 757
Bsc4I CCNNNNNNNGG 2 cut(s) 265, 599
Bse1I ACTGG 2 cut(s) 188, 506
Bse3DI GCAATG 1 cut(s) 744
BseBI CCWGG 2 cut(s) 529, 758
BseDI CCNNGG 3 cut(s) 264, 756, 757
BseLI CCNNNNNNNGG 2 cut(s) 265, 599
BseMI GCAATG 1 cut(s) 744
BseMII CTCAG 2 cut(s) 646, 665
BseNI ACTGG 2 cut(s) 188, 506
BseRI GAGGAG 1 cut(s) 509
BseSI GKGCMC 1 cut(s) 183
BseXI GCAGC 4 cut(s) 486, 489, 736, 764
BsgI GTGCAG 1 cut(s) 756
BsiHKAI GWGCWC 1 cut(s) 183
BsiSI CCGG 1 cut(s) 231
BslFI GGGAC 1 cut(s) 403
BslI CCNNNNNNNGG 2 cut(s) 265, 599
BsmFI GGGAC 1 cut(s) 403
BsmI GAATGC 1 cut(s) 463
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 58, 726
Bsp19I CCATGG 1 cut(s) 264
BspACI CCGC 2 cut(s) 170, 579
BspCNI CTCAG 2 cut(s) 645, 666
BspLI GGNNCC 1 cut(s) 158
BspMAI CTGCAG 1 cut(s) 754
BsrDI GCAATG 1 cut(s) 744
BsrI ACTGG 2 cut(s) 188, 506
BssECI CCNNGG 3 cut(s) 264, 756, 757
BssMI GATC 2 cut(s) 58, 726
BssT1I CCWWGG 1 cut(s) 264
Bst2UI CCWGG 2 cut(s) 529, 758
Bst4CI ACNGT 7 cut(s) 106, 241, 432, 442, 524, 571, 777
BstC8I GCNNGC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 632, 674
BstDSI CCRYGG 1 cut(s) 264
BstH2I RGCGCY 1 cut(s) 296
BstHHI GCGC 1 cut(s) 295
BstKTI GATC 2 cut(s) 61, 729
BstMBI GATC 2 cut(s) 58, 726
BstMWI GCNNNNNNNGC 1 cut(s) 178
BstNI CCWGG 2 cut(s) 529, 758
BstNSI RCATGY 1 cut(s) 410
BstSCI CCNGG 3 cut(s) 230, 527, 756
BstSFI CTRYAG 1 cut(s) 750
BstSLI GKGCMC 1 cut(s) 183
BstV1I GCAGC 4 cut(s) 486, 489, 736, 764
BstX2I RGATCY 1 cut(s) 58
BstXI CCANNNNNNTGG 1 cut(s) 48
BstYI RGATCY 1 cut(s) 58
BtgI CCRYGG 1 cut(s) 264
BtsI GCAGTG 1 cut(s) 183
BtsIMutI CAGTG 4 cut(s) 181, 183, 428, 773
Cac8I GCNNGC 1 cut(s) 174
CaiI CAGNNNCTG 1 cut(s) 528
CfoI GCGC 1 cut(s) 295
Csp6I GTAC 2 cut(s) 138, 762
CviAII CATG 4 cut(s) 265, 346, 358, 407
CviJI RGCY 8 cut(s) 86, 143, 499, 614, 624, 683, 695, 755
CviKI_1 RGCY 8 cut(s) 86, 143, 499, 614, 624, 683, 695, 755
CviQI GTAC 2 cut(s) 138, 762
DdeI CTNAG 2 cut(s) 632, 674
DpnI GATC 2 cut(s) 60, 728
DpnII GATC 2 cut(s) 58, 726
EciI GGCGGA 1 cut(s) 568
Eco130I CCWWGG 1 cut(s) 264
Eco32I GATATC 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 192
EcoRII CCWGG 2 cut(s) 527, 756
EcoRV GATATC 1 cut(s) 353
EcoT14I CCWWGG 1 cut(s) 264
ErhI CCWWGG 1 cut(s) 264
FaeI CATG 4 cut(s) 268, 349, 361, 410
FaqI GGGAC 1 cut(s) 403
FatI CATG 4 cut(s) 264, 345, 357, 406
FauI CCCGC 1 cut(s) 177
Fnu4HI GCNGC 4 cut(s) 500, 503, 750, 753
Fsp4HI GCNGC 4 cut(s) 500, 503, 750, 753
GlaI GCGC 1 cut(s) 294
GluI GCNGC 4 cut(s) 500, 503, 750, 753
HaeII RGCGCY 1 cut(s) 296
HapII CCGG 1 cut(s) 231
HhaI GCGC 1 cut(s) 295
Hin1II CATG 4 cut(s) 268, 349, 361, 410
Hin6I GCGC 1 cut(s) 293
HinP1I GCGC 1 cut(s) 293
HinfI GANTC 1 cut(s) 790
HpaII CCGG 1 cut(s) 231
HphI GGTGA 1 cut(s) 377
Hpy166II GTNNAC 3 cut(s) 181, 368, 435
Hpy188I TCNGA 1 cut(s) 675
Hpy188III TCNNGA 1 cut(s) 724
Hpy8I GTNNAC 3 cut(s) 181, 368, 435
HpyAV CCTTC 1 cut(s) 681
HpyCH4III ACNGT 7 cut(s) 106, 241, 432, 442, 524, 571, 777
HpyCH4V TGCA 6 cut(s) 4, 181, 341, 428, 752, 773
HpyF10VI GCNNNNNNNGC 1 cut(s) 178
HpyF3I CTNAG 2 cut(s) 632, 674
Hsp92II CATG 4 cut(s) 268, 349, 361, 410
HspAI GCGC 1 cut(s) 293
Kzo9I GATC 2 cut(s) 58, 726
LmnI GCTCC 1 cut(s) 496
Lsp1109I GCAGC 4 cut(s) 486, 489, 736, 764
LweI GCATC 1 cut(s) 750
MaeIII GTNAC 4 cut(s) 19, 100, 378, 508
MalI GATC 2 cut(s) 60, 728
MboI GATC 2 cut(s) 58, 726
MboII GAAGA 1 cut(s) 53
MflI RGATCY 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 183
MluCI AATT 5 cut(s) 192, 204, 281, 513, 783
MnlI CCTC 2 cut(s) 38, 487
MseI TTAA 1 cut(s) 545
MslI CAYNNNNRTG 2 cut(s) 186, 664
MspA1I CMGCKG 2 cut(s) 86, 143
MspI CCGG 1 cut(s) 231
MspR9I CCNGG 3 cut(s) 232, 529, 758
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 2 cut(s) 529, 758
MwoI GCNNNNNNNGC 1 cut(s) 178
NciI CCSGG 1 cut(s) 232
NcoI CCATGG 1 cut(s) 264
NdeII GATC 2 cut(s) 58, 726
NlaIII CATG 4 cut(s) 268, 349, 361, 410
NlaIV GGNNCC 1 cut(s) 158
NmuCI GTSAC 2 cut(s) 100, 378
NspI RCATGY 1 cut(s) 410
PasI CCCWGGG 1 cut(s) 757
PcsI WCGNNNNNNNCGW 1 cut(s) 722
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 1 cut(s) 790
PflMI CCANNNNNTGG 1 cut(s) 265
PkrI GCNGC 4 cut(s) 501, 504, 751, 754
Psp6I CCWGG 2 cut(s) 527, 756
PspGI CCWGG 2 cut(s) 527, 756
PspN4I GGNNCC 1 cut(s) 158
PstI CTGCAG 1 cut(s) 754
PstNI CAGNNNCTG 1 cut(s) 528
PsuI RGATCY 1 cut(s) 58
PvuII CAGCTG 2 cut(s) 86, 143
RsaI GTAC 2 cut(s) 139, 763
RsaNI GTAC 2 cut(s) 138, 762
RseI CAYNNNNRTG 2 cut(s) 186, 664
SaqAI TTAA 1 cut(s) 545
SatI GCNGC 4 cut(s) 500, 503, 750, 753
Sau3AI GATC 2 cut(s) 58, 726
ScrFI CCNGG 3 cut(s) 232, 529, 758
SduI GDGCHC 1 cut(s) 183
SetI ASST 6 cut(s) 88, 145, 501, 685, 697, 711
SfaNI GCATC 1 cut(s) 750
SfcI CTRYAG 1 cut(s) 750
SmiMI CAYNNNNRTG 2 cut(s) 186, 664
Sse9I AATT 5 cut(s) 192, 204, 281, 513, 783
SsiI CCGC 2 cut(s) 170, 579
StyD4I CCNGG 3 cut(s) 230, 527, 756
StyI CCWWGG 1 cut(s) 264
TaaI ACNGT 7 cut(s) 106, 241, 432, 442, 524, 571, 777
TaqI TCGA 1 cut(s) 716
TasI AATT 5 cut(s) 192, 204, 281, 513, 783
TfiI GAWTC 1 cut(s) 790
Tru1I TTAA 1 cut(s) 545
Tru9I TTAA 1 cut(s) 545
TscAI CASTG 4 cut(s) 183, 188, 435, 780
TseFI GTSAC 2 cut(s) 100, 378
TseI GCWGC 4 cut(s) 499, 502, 749, 752
Tsp45I GTSAC 2 cut(s) 100, 378
TspDTI ATGAA 3 cut(s) 63, 485, 526
TspGWI ACGGA 1 cut(s) 441
TspRI CASTG 4 cut(s) 183, 188, 435, 780
Van91I CCANNNNNTGG 1 cut(s) 265
VneI GTGCAC 1 cut(s) 179
XapI RAATTY 1 cut(s) 192
XceI RCATGY 1 cut(s) 410
XcmI CCANNNNNNNNNTGG 1 cut(s) 180
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.