Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0018098

Physical Location & Seq

Genomic Coordinates Reverse (-)

13444620 .. 13445269

Gene Structure 650 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g10710.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGAATTATGACTGTGATAAAGCCAACTCCAAAGCCACGAAGTGGGTATTATCTACTGACGGAACGATCACCAATCCTCACTCTGGGCTAGTCTTGACAGCCCATGGAGCTGAAAACGGCACCTCCCTAACAGCAGAAACCAATGTCAATGCTGCTACGCATGGTTGGAAAGCTGAAGATGACGTAGAGCCCACCGTCACTTCCATTGAGGGCTCTGAAGAACCCATCGTCATTCGCAAATTAGAAGGGTCAGTTAACCTGCGATGGGTGTTCAAGTACGATGGGACAATTCTAAACCCTAATGCTACACTTTTCATGGATGAGAGAGATAGCAATCAATCTCTTGAACAGATCATACTGTATCCTCGCACTGGGAATCCTTACCAGCAGTGGGTCTCATTTTTCTCAGTGCATGGTTGCCATGCATCCGTAGAGAAGAAATTATCCATTACTACCTTGTTTTCCTGCCATAAGCAATCAGTATATATAGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RIP Ricin_B_lectin

Protein Analysis

165

Amino Acids

18.15

Weight (kDa)

5.44

Isoelectric Point (pI)

34.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0018098)

Species	Orthologous Gene IDs
malus_domestica	MD00G1065500.v1.1 MD06G1085400.v1.1 MD06G1085500.v1.1 MD08G1097300.v1.1
prunus_persica	Prupe.1G294500_v2.0.a1 Prupe.1G294700_v2.0.a1 Prupe.1G294800_v2.0.a1 Prupe.1G294900_v2.0.a1
pyrus_communis	pycom08g07940 pycom14g10710 pycom14g10770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	267
AccB1I	GGYRCC	1 cut(s)	119
AccB7I	CCANNNNNTGG	1 cut(s)	42
AcuI	CTGAAG	2 cut(s)	195, 237
AdeI	CACNNNGTG	1 cut(s)	42
AfaI	GTAC	1 cut(s)	278
AfiI	CCNNNNNNNGG	5 cut(s)	42, 83, 265, 371, 391
AgsI	TTSAA	2 cut(s)	274, 347
AluBI	AGCT	2 cut(s)	110, 173
AluI	AGCT	2 cut(s)	110, 173
Alw26I	GTCTC	1 cut(s)	400
ApeKI	GCWGC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	61
BanI	GGYRCC	1 cut(s)	119
BanII	GRGCYC	2 cut(s)	192, 215
BbvI	GCAGC	1 cut(s)	139
BccI	CCATC	3 cut(s)	233, 258, 275
BceAI	ACGGC	1 cut(s)	133
BciVI	GTATCC	1 cut(s)	372
BcoDI	GTCTC	1 cut(s)	400
BfaI	CTAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	267
BfuI	GTATCC	1 cut(s)	372
BisI	GCNGC	1 cut(s)	153
BlsI	GCNGC	1 cut(s)	154
BmiI	GGNNCC	1 cut(s)	121
BmrI	ACTGGG	1 cut(s)	381
BmsI	GCATC	1 cut(s)	434
BmuI	ACTGGG	1 cut(s)	381
BsaBI	GATNNNNATC	1 cut(s)	333
BsaI	GGTCTC	1 cut(s)	400
BsaJI	CCNNGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	107, 137
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 83, 265, 371, 391
Bse1I	ACTGG	1 cut(s)	376
Bse8I	GATNNNNATC	1 cut(s)	333
BseDI	CCNNGG	1 cut(s)	103
BseGI	GGATG	2 cut(s)	325, 425
BseJI	GATNNNNATC	1 cut(s)	333
BseLI	CCNNNNNNNGG	5 cut(s)	42, 83, 265, 371, 391
BseMII	CTCAG	1 cut(s)	420
BseNI	ACTGG	1 cut(s)	376
BseXI	GCAGC	1 cut(s)	139
BshNI	GGYRCC	1 cut(s)	119
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	5 cut(s)	42, 83, 265, 371, 391
BsmAI	GTCTC	1 cut(s)	400
BsmFI	GGGAC	1 cut(s)	298
Bso31I	GGTCTC	1 cut(s)	400
Bsp1286I	GDGCHC	2 cut(s)	192, 215
Bsp143I	GATC	2 cut(s)	66, 351
Bsp19I	CCATGG	1 cut(s)	103
BspCNI	CTCAG	1 cut(s)	419
BspLI	GGNNCC	1 cut(s)	121
BspMI	ACCTGC	1 cut(s)	267
BspT107I	GGYRCC	1 cut(s)	119
BspTNI	GGTCTC	1 cut(s)	400
BsrI	ACTGG	1 cut(s)	376
BssECI	CCNNGG	1 cut(s)	103
BssMI	GATC	2 cut(s)	66, 351
BssT1I	CCWWGG	1 cut(s)	103
Bst4CI	ACNGT	3 cut(s)	14, 196, 360
BstDEI	CTNAG	1 cut(s)	406
BstDSI	CCRYGG	1 cut(s)	103
BstF5I	GGATG	2 cut(s)	325, 425
BstKTI	GATC	2 cut(s)	69, 354
BstMAI	GTCTC	1 cut(s)	400
BstMBI	GATC	2 cut(s)	66, 351
BstMWI	GCNNNNNNNGC	1 cut(s)	107
BstV1I	GCAGC	1 cut(s)	139
BsuI	GTATCC	1 cut(s)	372
BtgI	CCRYGG	1 cut(s)	103
BtgZI	GCGATG	1 cut(s)	277
BtsCI	GGATG	2 cut(s)	325, 425
BtsI	GCAGTG	1 cut(s)	395
BtsIMutI	CAGTG	3 cut(s)	369, 395, 414
BveI	ACCTGC	1 cut(s)	267
Csp6I	GTAC	1 cut(s)	277
CviAII	CATG	5 cut(s)	104, 161, 316, 413, 422
CviJI	RGCY	8 cut(s)	23, 35, 88, 101, 110, 173, 190, 213
CviKI_1	RGCY	8 cut(s)	23, 35, 88, 101, 110, 173, 190, 213
CviQI	GTAC	1 cut(s)	277
DdeI	CTNAG	1 cut(s)	406
DpnI	GATC	2 cut(s)	68, 353
DpnII	GATC	2 cut(s)	66, 351
DraIII	CACNNNGTG	1 cut(s)	42
Eco130I	CCWWGG	1 cut(s)	103
Eco24I	GRGCYC	2 cut(s)	192, 215
Eco31I	GGTCTC	1 cut(s)	400
Eco57I	CTGAAG	2 cut(s)	195, 237
EcoT14I	CCWWGG	1 cut(s)	103
EcoT22I	ATGCAT	1 cut(s)	427
EcoT38I	GRGCYC	2 cut(s)	192, 215
ErhI	CCWWGG	1 cut(s)	103
FaeI	CATG	5 cut(s)	107, 164, 319, 416, 425
FaqI	GGGAC	1 cut(s)	298
FatI	CATG	5 cut(s)	103, 160, 315, 412, 421
Fnu4HI	GCNGC	1 cut(s)	153
FokI	GGATG	2 cut(s)	332, 412
FriOI	GRGCYC	2 cut(s)	192, 215
Fsp4HI	GCNGC	1 cut(s)	153
FspBI	CTAG	1 cut(s)	89
GluI	GCNGC	1 cut(s)	153
Hin1II	CATG	5 cut(s)	107, 164, 319, 416, 425
HincII	GTYRAC	1 cut(s)	256
HindII	GTYRAC	1 cut(s)	256
HinfI	GANTC	1 cut(s)	376
HpaI	GTTAAC	1 cut(s)	256
HphI	GGTGA	1 cut(s)	61
Hpy166II	GTNNAC	1 cut(s)	256
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	2 cut(s)	94, 344
Hpy8I	GTNNAC	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	239
HpyCH4III	ACNGT	3 cut(s)	14, 196, 360
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	412, 425
HpyF10VI	GCNNNNNNNGC	1 cut(s)	107
HpyF3I	CTNAG	1 cut(s)	406
HpySE526I	ACGT	1 cut(s)	183
Hsp92II	CATG	5 cut(s)	107, 164, 319, 416, 425
KspAI	GTTAAC	1 cut(s)	256
Kzo9I	GATC	2 cut(s)	66, 351
LmnI	GCTCC	1 cut(s)	107
LpnPI	CCDG	5 cut(s)	69, 272, 357, 398, 478
Lsp1109I	GCAGC	1 cut(s)	139
LweI	GCATC	1 cut(s)	434
MaeI	CTAG	1 cut(s)	89
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	196
MalI	GATC	2 cut(s)	68, 353
MboI	GATC	2 cut(s)	66, 351
MboII	GAAGA	3 cut(s)	188, 230, 448
MhlI	GDGCHC	2 cut(s)	192, 215
MluCI	AATT	4 cut(s)	4, 239, 288, 440
MmeI	TCCRAC	1 cut(s)	146
MnlI	CCTC	4 cut(s)	87, 133, 202, 375
Mph1103I	ATGCAT	1 cut(s)	427
MseI	TTAA	1 cut(s)	255
MwoI	GCNNNNNNNGC	1 cut(s)	107
NcoI	CCATGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	66, 351
NlaIII	CATG	5 cut(s)	107, 164, 319, 416, 425
NlaIV	GGNNCC	1 cut(s)	121
NmuCI	GTSAC	1 cut(s)	196
NsiI	ATGCAT	1 cut(s)	427
PfeI	GAWTC	1 cut(s)	376
PflMI	CCANNNNNTGG	1 cut(s)	42
PkrI	GCNGC	1 cut(s)	154
PspN4I	GGNNCC	1 cut(s)	121
PsrI	GAACNNNNNNTAC	2 cut(s)	339, 371
RsaI	GTAC	1 cut(s)	278
RsaNI	GTAC	1 cut(s)	277
SaqAI	TTAA	1 cut(s)	255
SatI	GCNGC	1 cut(s)	153
Sau3AI	GATC	2 cut(s)	66, 351
SduI	GDGCHC	2 cut(s)	192, 215
SetI	ASST	6 cut(s)	112, 125, 175, 186, 261, 458
SfaNI	GCATC	1 cut(s)	434
Sse9I	AATT	4 cut(s)	4, 239, 288, 440
SspMI	CTAG	1 cut(s)	89
StyI	CCWWGG	1 cut(s)	103
TaaI	ACNGT	3 cut(s)	14, 196, 360
TaiI	ACGT	1 cut(s)	186
TasI	AATT	4 cut(s)	4, 239, 288, 440
TfiI	GAWTC	1 cut(s)	376
Tru1I	TTAA	1 cut(s)	255
Tru9I	TTAA	1 cut(s)	255
TscAI	CASTG	3 cut(s)	376, 395, 414
TseFI	GTSAC	1 cut(s)	196
TseI	GCWGC	1 cut(s)	152
Tsp45I	GTSAC	1 cut(s)	196
TspDTI	ATGAA	2 cut(s)	17, 304
TspGWI	ACGGA	2 cut(s)	75, 418
TspRI	CASTG	3 cut(s)	376, 395, 414
Van91I	CCANNNNNTGG	1 cut(s)	42
XspI	CTAG	1 cut(s)	89
Zsp2I	ATGCAT	1 cut(s)	427

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.