pycom14g11760

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0016006
Physical Location & Seq
Forward (+)
14848604 .. 14850367
1764 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 456 bp
ATGTGGTTTGGAGGCGGCGCGTTTAGACCTTCTAGTTCAACCGGAAGTGGTTTGATTTCAAGCGCCACCGCGTTTGTCAGGCATTTCTCCCGTAGCCGCGCGGAGAATCTGAGGAAAATCAACCCAAAAGTGAGCTTTCCGGAAGCCAATTCCATCGCTCGTGATCTATACGACGTCGTCAAGCAGCATGGCCCTCTGACCATCCCCAATACTTGGGTTCAGGCTAAGGAGTCTGGTGTCAGTGGATTGACGAGCAAAACACTCATGAAGATAATGCTCAAATGGATGAGGGGAAGGAAGATGCTGAAGCTGTTCCCCAACCAAGTTGGTTCGACCAAAAAATTCTTGTTATGCACACTGCCTGAAGACGCTGAAGTTACTCAATTTAGAGAATCGTCAGCGGTAAGGCTGCAACATAGGAAGCCTTCCATTAAACGGAAGAAGCAAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.02

Weight (kDa)

11.1

Isoelectric Point (pI)

39.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AccB7I CCANNNNNTGG 1 cut(s) 213
AccII CGCG 4 cut(s) 20, 71, 99, 101
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 5 cut(s) 15, 69, 97, 101, 401
AcsI RAATTY 1 cut(s) 341
AcuI CTGAAG 3 cut(s) 326, 384, 393
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 2 cut(s) 213, 435
AgsI TTSAA 2 cut(s) 39, 60
AluBI AGCT 2 cut(s) 135, 310
AluI AGCT 2 cut(s) 135, 310
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 1 cut(s) 190
ApeKI GCWGC 2 cut(s) 184, 409
ApoI RAATTY 1 cut(s) 341
Asp700I GAANNNNTTC 1 cut(s) 311
AspLEI GCGC 3 cut(s) 20, 65, 101
AspS9I GGNCC 1 cut(s) 191
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 372
BbvI GCAGC 2 cut(s) 196, 396
BccI CCATC 2 cut(s) 161, 209
BfaI CTAG 1 cut(s) 33
BfoI RGCGCY 1 cut(s) 66
BisI GCNGC 4 cut(s) 16, 97, 185, 410
BlsI GCNGC 4 cut(s) 17, 98, 186, 411
BmgT120I GGNCC 1 cut(s) 191
BmsI GCATC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 372
Bpu10I CCTNAGC 1 cut(s) 225
BsaHI GRCGYC 1 cut(s) 174
BsaWI WCCGGW 2 cut(s) 41, 139
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 435
BseAI TCCGGA 1 cut(s) 139
BseGI GGATG 2 cut(s) 201, 291
BseLI CCNNNNNNNGG 2 cut(s) 213, 435
BseMII CTCAG 1 cut(s) 101
BseXI GCAGC 2 cut(s) 196, 396
Bsh1236I CGCG 4 cut(s) 20, 71, 99, 101
BshFI GGCC 1 cut(s) 192
BsiSI CCGG 2 cut(s) 42, 140
BslI CCNNNNNNNGG 2 cut(s) 213, 435
BsnI GGCC 1 cut(s) 192
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 5 cut(s) 15, 69, 97, 101, 401
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 1 cut(s) 102
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 4 cut(s) 20, 71, 99, 101
BspHI TCATGA 1 cut(s) 264
BssMI GATC 1 cut(s) 163
BssNI GRCGYC 1 cut(s) 174
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 174
BstDEI CTNAG 2 cut(s) 110, 225
BstF5I GGATG 2 cut(s) 201, 291
BstFNI CGCG 4 cut(s) 20, 71, 99, 101
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 3 cut(s) 20, 65, 101
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstUI CGCG 4 cut(s) 20, 71, 99, 101
BstV1I GCAGC 2 cut(s) 196, 396
BstV2I GAAGAC 1 cut(s) 372
BsuRI GGCC 1 cut(s) 192
BtgZI GCGATG 1 cut(s) 139
BtsCI GGATG 2 cut(s) 201, 291
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 2 cut(s) 247, 356
CciI TCATGA 1 cut(s) 264
CfoI GCGC 3 cut(s) 20, 65, 101
Cfr13I GGNCC 1 cut(s) 191
CseI GACGC 1 cut(s) 377
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 2 cut(s) 188, 265
CviJI RGCY 8 cut(s) 96, 135, 146, 192, 224, 310, 409, 424
CviKI_1 RGCY 8 cut(s) 96, 135, 146, 192, 224, 310, 409, 424
DdeI CTNAG 2 cut(s) 110, 225
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eco57I CTGAAG 3 cut(s) 326, 384, 393
FaeI CATG 2 cut(s) 191, 268
FaiI YATR 5 cut(s) 169, 189, 266, 352, 417
FatI CATG 2 cut(s) 187, 264
Fnu4HI GCNGC 4 cut(s) 16, 97, 185, 410
FokI GGATG 2 cut(s) 188, 298
Fsp4HI GCNGC 4 cut(s) 16, 97, 185, 410
FspBI CTAG 1 cut(s) 33
GlaI GCGC 3 cut(s) 19, 64, 100
GluI GCNGC 4 cut(s) 16, 97, 185, 410
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 192
HapII CCGG 2 cut(s) 42, 140
HgaI GACGC 1 cut(s) 377
HhaI GCGC 3 cut(s) 20, 65, 101
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 191, 268
Hin6I GCGC 3 cut(s) 18, 63, 99
HinP1I GCGC 3 cut(s) 18, 63, 99
HinfI GANTC 3 cut(s) 106, 230, 392
HpaII CCGG 2 cut(s) 42, 140
Hpy188I TCNGA 2 cut(s) 111, 198
Hpy188III TCNNGA 3 cut(s) 140, 161, 265
Hpy99I CGWCG 2 cut(s) 176, 179
HpyAV CCTTC 3 cut(s) 39, 288, 435
HpyCH4IV ACGT 1 cut(s) 174
HpyCH4V TGCA 2 cut(s) 354, 412
HpyF3I CTNAG 2 cut(s) 110, 225
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 191, 268
HspAI GCGC 3 cut(s) 18, 63, 99
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 55, 64, 153, 206, 219, 375
Lsp1109I GCAGC 2 cut(s) 196, 396
LweI GCATC 1 cut(s) 291
MaeI CTAG 1 cut(s) 33
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 4 cut(s) 280, 310, 377, 451
MluCI AATT 3 cut(s) 148, 341, 383
MlyI GAGTC 1 cut(s) 239
MnlI CCTC 4 cut(s) 5, 105, 204, 282
MroI TCCGGA 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 311
MseI TTAA 1 cut(s) 432
MspA1I CMGCKG 1 cut(s) 401
MspI CCGG 2 cut(s) 42, 140
MvnI CGCG 4 cut(s) 20, 71, 99, 101
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 191, 268
PagI TCATGA 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 2 cut(s) 106, 392
PflFI GACNNNGTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 213
PkrI GCNGC 4 cut(s) 17, 98, 186, 411
PleI GAGTC 1 cut(s) 238
PpsI GAGTC 1 cut(s) 238
PspPI GGNCC 1 cut(s) 191
PsyI GACNNNGTC 1 cut(s) 176
SaqAI TTAA 1 cut(s) 432
SatI GCNGC 4 cut(s) 16, 97, 185, 410
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 239
SetI ASST 4 cut(s) 31, 137, 177, 312
SfaNI GCATC 1 cut(s) 291
Sse9I AATT 3 cut(s) 148, 341, 383
SsiI CCGC 5 cut(s) 15, 69, 97, 101, 401
SspMI CTAG 1 cut(s) 33
TaiI ACGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 332
TasI AATT 3 cut(s) 148, 341, 383
TauI GCSGC 2 cut(s) 18, 99
TfiI GAWTC 2 cut(s) 106, 392
Tru1I TTAA 1 cut(s) 432
Tru9I TTAA 1 cut(s) 432
TscAI CASTG 2 cut(s) 247, 363
TseI GCWGC 2 cut(s) 184, 409
TspDTI ATGAA 1 cut(s) 281
TspGWI ACGGA 1 cut(s) 451
TspRI CASTG 2 cut(s) 247, 363
Tth111I GACNNNGTC 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 213
XapI RAATTY 1 cut(s) 341
XmnI GAANNNNTTC 1 cut(s) 311
XspI CTAG 1 cut(s) 33
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.