pycom14g13930

Peptide methionine sulfoxide reductase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0010798
Physical Location & Seq
Reverse (-)
16737735 .. 16738971
1237 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 588 bp
ATGGCCGCCGCTTCCGGTAACTATGCCGTCAACAACCCGGATTTGGGCCGGGACTCGGACGCTCCGGACAATCAGGGTCACGAGTTCGCCCAATTCGGATCCGGGTGCTTCTGGGGAGCGGAGCTGAGGTTCCAGCGGGTGGTCGGGGTGGTGAAGACCGAGGTCGGGTACTCCCAGGGCGACGAGGACAATCCGAATTACGAATTGGTCTGCTCCGGAAGGACGAACCACTCGGAGGTGGTTCGGGTCCAATTTGACCCGGAAGTCTGCGCCTATACGGATCTTCTCTCTGTGTTTTGGGATGGTCATGATCCAACGACCCTCAATAGCCAGGGAGGGGATGTTGGTACACAATACCGATCCGGAATCTACTTCTACAATGAAAACCAGGCTCGTCTGGCCGAGGAATCAAAGGCAGCAAAGCAGGCGGAGTTGAACGATACGGAGGTGGTGACAGAGATCCTCCTGGCGAAGAAGTTTTACAGGGCAGAGGAGTACCACCAGCAATATCTCGAAAAAGGAGGACGTAGAGGCAACAAACAATCTGCCGAAAAGGGTTGCACTGATCCCATCAGATGCTACGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PMSR

Protein Analysis

196

Amino Acids

21.7

Weight (kDa)

4.8

Isoelectric Point (pI)

33.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMSR PF01625 30 - 174 6.2e-57 Peptide methionine sulfoxide reductase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 263
AccB7I CCANNNNNTGG 1 cut(s) 139
AccBSI CCGCTC 1 cut(s) 119
AccIII TCCGGA 3 cut(s) 64, 215, 362
AciI CCGC 5 cut(s) 6, 9, 119, 136, 428
AclWI GGATC 7 cut(s) 93, 106, 288, 305, 354, 454, 560
AcoI YGGCCR 2 cut(s) 3, 399
AfaI GTAC 3 cut(s) 170, 349, 497
AfiI CCNNNNNNNGG 7 cut(s) 43, 44, 55, 139, 165, 235, 337
AgsI TTSAA 1 cut(s) 436
AjnI CCWGG 4 cut(s) 174, 330, 387, 465
AjuI GAANNNNNNNTTGG 2 cut(s) 188, 220
AloI GAACNNNNNNTCC 2 cut(s) 113, 145
AluBI AGCT 1 cut(s) 124
AluI AGCT 1 cut(s) 124
AlwI GGATC 7 cut(s) 93, 106, 288, 305, 354, 454, 560
Aor13HI TCCGGA 3 cut(s) 64, 215, 362
AoxI GGCC 3 cut(s) 3, 46, 399
ApeKI GCWGC 1 cut(s) 416
AspLEI GCGC 1 cut(s) 272
AspS9I GGNCC 2 cut(s) 46, 247
AsuC2I CCSGG 4 cut(s) 38, 50, 103, 260
AsuHPI GGTGA 2 cut(s) 163, 463
AvaII GGWCC 1 cut(s) 247
BaeI ACNNNNGTAYC 2 cut(s) 432, 465
BamHI GGATCC 1 cut(s) 98
BarI GAAGNNNNNNTAC 2 cut(s) 464, 496
BauI CACGAG 1 cut(s) 80
BbsI GAAGAC 1 cut(s) 161
BbvCI CCTCAGC 1 cut(s) 125
BbvI GCAGC 1 cut(s) 428
BccI CCATC 2 cut(s) 296, 578
BceAI ACGGC 1 cut(s) 11
BciT130I CCWGG 4 cut(s) 176, 332, 389, 467
BcnI CCSGG 4 cut(s) 38, 50, 103, 260
BisI GCNGC 3 cut(s) 6, 9, 417
BlsI GCNGC 3 cut(s) 7, 10, 418
Bme1390I CCNGG 8 cut(s) 38, 50, 103, 176, 260, 332, 389, 467
Bme18I GGWCC 1 cut(s) 247
BmgT120I GGNCC 2 cut(s) 46, 247
BmiI GGNNCC 3 cut(s) 100, 131, 248
BmrFI CCNGG 8 cut(s) 38, 50, 103, 176, 260, 332, 389, 467
BmsI GCATC 1 cut(s) 566
BoxI GACNNNNGTC 1 cut(s) 161
BpiI GAAGAC 1 cut(s) 161
Bpu10I CCTNAGC 1 cut(s) 125
BpuMI CCSGG 4 cut(s) 38, 50, 103, 260
BsaJI CCNNGG 5 cut(s) 159, 174, 175, 331, 402
BsaWI WCCGGW 4 cut(s) 14, 64, 215, 362
BsaXI ACNNNNNCTCC 4 cut(s) 113, 143, 327, 357
Bsc4I CCNNNNNNNGG 7 cut(s) 43, 44, 55, 139, 165, 235, 337
BseAI TCCGGA 3 cut(s) 64, 215, 362
BseBI CCWGG 4 cut(s) 176, 332, 389, 467
BseDI CCNNGG 5 cut(s) 159, 174, 175, 331, 402
BseGI GGATG 2 cut(s) 307, 346
BseLI CCNNNNNNNGG 7 cut(s) 43, 44, 55, 139, 165, 235, 337
BseMII CTCAG 1 cut(s) 116
BseRI GAGGAG 1 cut(s) 506
BseXI GCAGC 1 cut(s) 428
BshFI GGCC 3 cut(s) 5, 48, 401
BsiSI CCGG 8 cut(s) 15, 38, 49, 65, 102, 216, 260, 363
BslFI GGGAC 1 cut(s) 65
BslI CCNNNNNNNGG 7 cut(s) 43, 44, 55, 139, 165, 235, 337
BsmFI GGGAC 1 cut(s) 65
BsnI GGCC 3 cut(s) 5, 48, 401
Bsp13I TCCGGA 3 cut(s) 64, 215, 362
Bsp143I GATC 6 cut(s) 98, 280, 310, 359, 459, 565
BspACI CCGC 5 cut(s) 6, 9, 119, 136, 428
BspANI GGCC 3 cut(s) 5, 48, 401
BspCNI CTCAG 1 cut(s) 117
BspEI TCCGGA 3 cut(s) 64, 215, 362
BspHI TCATGA 1 cut(s) 307
BspLI GGNNCC 3 cut(s) 100, 131, 248
BspPI GGATC 7 cut(s) 93, 106, 288, 305, 354, 454, 560
BsrBI CCGCTC 1 cut(s) 119
BssECI CCNNGG 5 cut(s) 159, 174, 175, 331, 402
BssMI GATC 6 cut(s) 98, 280, 310, 359, 459, 565
BssSI CACGAG 1 cut(s) 80
Bst2BI CACGAG 1 cut(s) 80
Bst2UI CCWGG 4 cut(s) 176, 332, 389, 467
Bst4CI ACNGT 1 cut(s) 584
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 1 cut(s) 125
BstF5I GGATG 2 cut(s) 307, 346
BstHHI GCGC 1 cut(s) 272
BstKTI GATC 6 cut(s) 101, 283, 313, 362, 462, 568
BstMBI GATC 6 cut(s) 98, 280, 310, 359, 459, 565
BstMWI GCNNNNNNNGC 2 cut(s) 398, 425
BstNI CCWGG 4 cut(s) 176, 332, 389, 467
BstPAI GACNNNNGTC 1 cut(s) 161
BstSCI CCNGG 8 cut(s) 36, 48, 101, 174, 258, 330, 387, 465
BstV1I GCAGC 1 cut(s) 428
BstV2I GAAGAC 1 cut(s) 161
BstX2I RGATCY 3 cut(s) 98, 280, 459
BstYI RGATCY 3 cut(s) 98, 280, 459
BsuRI GGCC 3 cut(s) 5, 48, 401
BtsCI GGATG 2 cut(s) 307, 346
BtsIMutI CAGTG 1 cut(s) 561
Cac8I GCNNGC 1 cut(s) 426
CciI TCATGA 1 cut(s) 307
CfoI GCGC 1 cut(s) 272
Cfr13I GGNCC 2 cut(s) 46, 247
CseI GACGC 1 cut(s) 68
Csp6I GTAC 3 cut(s) 169, 348, 496
CviAII CATG 1 cut(s) 308
CviJI RGCY 6 cut(s) 5, 48, 124, 330, 392, 401
CviKI_1 RGCY 6 cut(s) 5, 48, 124, 330, 392, 401
CviQI GTAC 3 cut(s) 169, 348, 496
DdeI CTNAG 1 cut(s) 125
DpnI GATC 6 cut(s) 100, 282, 312, 361, 461, 567
DpnII GATC 6 cut(s) 98, 280, 310, 359, 459, 565
DrdI GACNNNNNNGTC 1 cut(s) 263
DseDI GACNNNNNNGTC 1 cut(s) 263
EaeI YGGCCR 2 cut(s) 3, 399
EciI GGCGGA 1 cut(s) 443
Eco47I GGWCC 1 cut(s) 247
EcoRII CCWGG 4 cut(s) 174, 330, 387, 465
FaeI CATG 1 cut(s) 311
FaiI YATR 3 cut(s) 24, 276, 309
FaqI GGGAC 1 cut(s) 65
FatI CATG 1 cut(s) 307
FauI CCCGC 1 cut(s) 129
Fnu4HI GCNGC 3 cut(s) 6, 9, 417
FokI GGATG 2 cut(s) 314, 353
Fsp4HI GCNGC 3 cut(s) 6, 9, 417
GlaI GCGC 1 cut(s) 271
GluI GCNGC 3 cut(s) 6, 9, 417
HaeIII GGCC 3 cut(s) 5, 48, 401
HapII CCGG 8 cut(s) 15, 38, 49, 65, 102, 216, 260, 363
HgaI GACGC 1 cut(s) 68
HhaI GCGC 1 cut(s) 272
Hin1II CATG 1 cut(s) 311
Hin6I GCGC 1 cut(s) 270
HinP1I GCGC 1 cut(s) 270
HincII GTYRAC 1 cut(s) 31
HindII GTYRAC 1 cut(s) 31
HinfI GANTC 3 cut(s) 53, 366, 407
HpaII CCGG 8 cut(s) 15, 38, 49, 65, 102, 216, 260, 363
HphI GGTGA 2 cut(s) 163, 463
Hpy166II GTNNAC 2 cut(s) 31, 350
Hpy188I TCNGA 5 cut(s) 58, 98, 195, 235, 575
Hpy188III TCNNGA 6 cut(s) 65, 80, 216, 308, 363, 512
Hpy8I GTNNAC 2 cut(s) 31, 350
Hpy99I CGWCG 1 cut(s) 185
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 1 cut(s) 584
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 1 cut(s) 561
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 425
HpyF3I CTNAG 1 cut(s) 125
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 1 cut(s) 311
HspAI GCGC 1 cut(s) 270
Kpn2I TCCGGA 3 cut(s) 64, 215, 362
Kzo9I GATC 6 cut(s) 98, 280, 310, 359, 459, 565
LmnI GCTCC 4 cut(s) 67, 116, 121, 218
Lsp1109I GCAGC 1 cut(s) 428
LweI GCATC 1 cut(s) 566
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 3 cut(s) 17, 77, 451
MalI GATC 6 cut(s) 100, 282, 312, 361, 461, 567
MbiI CCGCTC 1 cut(s) 119
MboI GATC 6 cut(s) 98, 280, 310, 359, 459, 565
MboII GAAGA 3 cut(s) 166, 275, 484
MflI RGATCY 3 cut(s) 98, 280, 459
MluCI AATT 4 cut(s) 92, 196, 203, 251
MlyI GAGTC 1 cut(s) 47
MmeI TCCRAC 1 cut(s) 338
MroI TCCGGA 3 cut(s) 64, 215, 362
MspA1I CMGCKG 1 cut(s) 136
MspI CCGG 8 cut(s) 15, 38, 49, 65, 102, 216, 260, 363
MspR9I CCNGG 8 cut(s) 38, 50, 103, 176, 260, 332, 389, 467
MvaI CCWGG 4 cut(s) 176, 332, 389, 467
MwoI GCNNNNNNNGC 2 cut(s) 398, 425
NciI CCSGG 4 cut(s) 38, 50, 103, 260
NdeII GATC 6 cut(s) 98, 280, 310, 359, 459, 565
NlaIII CATG 1 cut(s) 311
NlaIV GGNNCC 3 cut(s) 100, 131, 248
NmeAIII GCCGAG 1 cut(s) 427
NmuCI GTSAC 2 cut(s) 77, 451
PagI TCATGA 1 cut(s) 307
PasI CCCWGGG 1 cut(s) 175
PfeI GAWTC 2 cut(s) 366, 407
PflMI CCANNNNNTGG 1 cut(s) 139
PkrI GCNGC 3 cut(s) 7, 10, 418
PleI GAGTC 1 cut(s) 47
PpsI GAGTC 1 cut(s) 47
PshAI GACNNNNGTC 1 cut(s) 161
Psp6I CCWGG 4 cut(s) 174, 330, 387, 465
PspGI CCWGG 4 cut(s) 174, 330, 387, 465
PspN4I GGNNCC 3 cut(s) 100, 131, 248
PspPI GGNCC 2 cut(s) 46, 247
PsuI RGATCY 3 cut(s) 98, 280, 459
RsaI GTAC 3 cut(s) 170, 349, 497
RsaNI GTAC 3 cut(s) 169, 348, 496
SatI GCNGC 3 cut(s) 6, 9, 417
Sau3AI GATC 6 cut(s) 98, 280, 310, 359, 459, 565
Sau96I GGNCC 2 cut(s) 46, 247
SchI GAGTC 1 cut(s) 47
ScrFI CCNGG 8 cut(s) 38, 50, 103, 176, 260, 332, 389, 467
SetI ASST 6 cut(s) 126, 131, 165, 240, 450, 529
SfaNI GCATC 1 cut(s) 566
SinI GGWCC 1 cut(s) 247
Sse9I AATT 4 cut(s) 92, 196, 203, 251
SsiI CCGC 5 cut(s) 6, 9, 119, 136, 428
StyD4I CCNGG 8 cut(s) 36, 48, 101, 174, 258, 330, 387, 465
TaaI ACNGT 1 cut(s) 584
TaiI ACGT 1 cut(s) 529
TaqI TCGA 1 cut(s) 513
TaqII GACCGA 1 cut(s) 173
TasI AATT 4 cut(s) 92, 196, 203, 251
TauI GCSGC 2 cut(s) 8, 11
TfiI GAWTC 2 cut(s) 366, 407
TscAI CASTG 1 cut(s) 568
TseFI GTSAC 2 cut(s) 77, 451
TseI GCWGC 1 cut(s) 416
Tsp45I GTSAC 2 cut(s) 77, 451
TspDTI ATGAA 1 cut(s) 396
TspGWI ACGGA 2 cut(s) 293, 458
TspRI CASTG 1 cut(s) 568
Van91I CCANNNNNTGG 1 cut(s) 139
VpaK11BI GGWCC 1 cut(s) 247
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.