pycom14g14720

FAS-associated factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr14
OG0012615
Physical Location & Seq
Forward (+)
17423851 .. 17425494
1644 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1062 bp
ATGGCAATGAGGGAAGGCATAAGATCAGCTGCAGAGGCATCTTGCAATGGGATCGTTCGCCGGATGGTAAGCCTTCCGAGAAGCCTTATGGGAGGATTTTCGAGAGCAATGGGGCACGGCAGACACCTTATAGGAATAGGATCAGGAAGAAGAACTCAAACCCTACCATCAAACTTTCCAATGCATTATCGAGAAGAGCCTCTAATCCTTCCAGAAGTATCGGTCTCTTTTCTAACTAGCTTCGAGCAGCAGTATGGCACCACGCATCCATTCTTTTACGCATGCCGGTTTATGGAAGCCCTAAAGATTGCTGAGGATGAGCACAAGTTCTTGTTCTTGTATCTCCACTCACCGGAACACCCTTTTACACCTTCTTTCTGTAGGGAGACGCTATCTTCAGAGGCGGTGGTGCAGTTTCTTGATGCTAACTTTGTTTCCTGGGGAGCAATTGCAGATAGAGATGAAGGTCTACAAATGAGTGCAACTCTTCGCCCGGCTTGCTTTCCATTCTGTGCTGTTATAGCTCCTGTTGCTGGTGATAACATAGCAGTGATGCAGCAGATGGAAGGGCCAATTTCCCCAACCGAGCTGGTGGGGATTCTGCAGCGGACGCTAGAGGAACAAGGGCTGGCGTTTCGCAGTTTGAAGGCCAAGAATGCAGAAAAAATAATAGCAGACCGCCGTCTGAGGGAAGAACAAGATGCAGCATATCTTGCAGCTATACAAATAGACAAGGAAAAGGAGAGACTAAAGAATGTACCTCTACCTGTTCGACCTCAAAAACCAGCAGAAGCCCCAAACAAAGCAAATCATGAGAGGCTTCAAAACCATTCTGCCCAAAAACAGCATGGAAAAACTAGAGAGGCTTCTATTGATCCATCAAGATCCTCAGGCTGCCCGGATACTGATCAGATTTCCAAATGGCGAAAGACGAGAGCAATGCTTCTTGTGCACAGACAAACTGCAGGCGGTTTACAGATACATAGATTCATTGGGTGTTCCTGGTATAGGAGGAAACTACAGATTGGTGTCAAGCTTCCCAAGAAAAGTGTATGGAGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UBX

Protein Analysis

354

Amino Acids

39.75

Weight (kDa)

9.49

Isoelectric Point (pI)

58.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAF1 PF21021 77 - 148 2.4e-12 Fas-associated factor 1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012615)

Species Orthologous Gene IDs
fragaria_vesca FvH4_5g05720 FvH4_5g05720 FvH4_5g05720
malus_domestica MD06G1170500.v1.1 MD14G1176300.v1.1
prunus_persica Prupe.5G170100_v2.0.a1
pyrus_communis pycom06g15190 pycom14g14720
rosa_chinensis RchiOBHm_Chr7g0193081
rosa_laevigata RLG00000004296
rosa_multiflora Rmu_ssc0000002.1_g000009
rosa_roxburghii Rroxscaffold_3G00262380
rosa_rugosa Rorug07G0007500
rosa_samantha Rh7AG132700 Rh7BG133600 Rh7CG136700 Rh7DG134600
rosa_wichuraiana Rw0G015840 Rw7G011340

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AccI GTMKAC 1 cut(s) 469
AciI CCGC 4 cut(s) 404, 607, 679, 969
AclWI GGATC 4 cut(s) 59, 148, 869, 879
AcuI CTGAAG 1 cut(s) 381
AfaI GTAC 1 cut(s) 759
AfiI CCNNNNNNNGG 5 cut(s) 292, 352, 533, 688, 1008
AgsI TTSAA 2 cut(s) 646, 824
AjnI CCWGG 2 cut(s) 437, 1001
AluBI AGCT 6 cut(s) 29, 240, 524, 589, 719, 1036
AluI AGCT 6 cut(s) 29, 240, 524, 589, 719, 1036
Alw21I GWGCWC 2 cut(s) 324, 954
Alw26I GTCTC 3 cut(s) 229, 380, 739
Alw44I GTGCAC 1 cut(s) 950
AlwI GGATC 4 cut(s) 59, 148, 869, 879
AoxI GGCC 2 cut(s) 569, 648
ApaLI GTGCAC 1 cut(s) 950
ApeKI GCWGC 7 cut(s) 29, 247, 556, 604, 704, 716, 894
AspS9I GGNCC 1 cut(s) 569
AsuC2I CCSGG 2 cut(s) 494, 899
AsuHPI GGTGA 2 cut(s) 342, 548
AxyI CCTNAGG 1 cut(s) 889
BaeGI GKGCMC 2 cut(s) 117, 954
BanI GGYRCC 1 cut(s) 257
Bbv12I GWGCWC 2 cut(s) 324, 954
BbvCI CCTCAGC 1 cut(s) 312
BbvI GCAGC 7 cut(s) 16, 259, 568, 616, 716, 728, 881
BccI CCATC 4 cut(s) 58, 175, 556, 886
BceAI ACGGC 2 cut(s) 133, 666
BcgI CGANNNNNNTGC 4 cut(s) 34, 68, 922, 956
BciT130I CCWGG 2 cut(s) 439, 1003
BciVI GTATCC 1 cut(s) 895
BclI TGATCA 1 cut(s) 907
BcnI CCSGG 2 cut(s) 494, 899
BcoDI GTCTC 3 cut(s) 229, 380, 739
BfaI CTAG 3 cut(s) 237, 614, 858
BfmI CTRYAG 5 cut(s) 30, 379, 602, 963, 1019
BfuI GTATCC 1 cut(s) 895
BisI GCNGC 7 cut(s) 30, 248, 557, 605, 705, 717, 895
BlsI GCNGC 7 cut(s) 31, 249, 558, 606, 706, 718, 896
Bme1390I CCNGG 4 cut(s) 439, 494, 899, 1003
BmgT120I GGNCC 1 cut(s) 569
BmiI GGNNCC 1 cut(s) 259
BmrFI CCNGG 4 cut(s) 439, 494, 899, 1003
BmsI GCATC 5 cut(s) 47, 274, 412, 543, 691
BoxI GACNNNNGTC 1 cut(s) 681
BplI GAGNNNNNCTC 2 cut(s) 469, 501
Bpu10I CCTNAGC 1 cut(s) 312
BpuMI CCSGG 2 cut(s) 494, 899
BsaBI GATNNNNATC 1 cut(s) 906
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 352
Bsc4I CCNNNNNNNGG 5 cut(s) 292, 352, 533, 688, 1008
Bse118I RCCGGY 1 cut(s) 285
Bse21I CCTNAGG 1 cut(s) 889
Bse3DI GCAATG 4 cut(s) 12, 52, 114, 945
Bse8I GATNNNNATC 1 cut(s) 906
BseBI CCWGG 2 cut(s) 439, 1003
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 3 cut(s) 69, 265, 322
BseJI GATNNNNATC 1 cut(s) 906
BseLI CCNNNNNNNGG 5 cut(s) 292, 352, 533, 688, 1008
BseMI GCAATG 4 cut(s) 12, 52, 114, 945
BseMII CTCAG 3 cut(s) 303, 677, 903
BseSI GKGCMC 2 cut(s) 117, 954
BseXI GCAGC 7 cut(s) 16, 259, 568, 616, 716, 728, 881
BsgI GTGCAG 1 cut(s) 431
BshFI GGCC 2 cut(s) 571, 650
BshNI GGYRCC 1 cut(s) 257
BsiHKAI GWGCWC 2 cut(s) 324, 954
BsiSI CCGG 5 cut(s) 61, 286, 353, 494, 899
BslI CCNNNNNNNGG 5 cut(s) 292, 352, 533, 688, 1008
BsmAI GTCTC 3 cut(s) 229, 380, 739
BsmBI CGTCTC 1 cut(s) 380
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 2 cut(s) 571, 650
Bso31I GGTCTC 1 cut(s) 229
Bsp1286I GDGCHC 3 cut(s) 117, 324, 954
Bsp143I GATC 6 cut(s) 23, 51, 140, 874, 884, 907
BspACI CCGC 4 cut(s) 404, 607, 679, 969
BspANI GGCC 2 cut(s) 571, 650
BspCNI CTCAG 3 cut(s) 304, 678, 902
BspHI TCATGA 1 cut(s) 811
BspLI GGNNCC 1 cut(s) 259
BspMAI CTGCAG 3 cut(s) 34, 606, 967
BspPI GGATC 4 cut(s) 59, 148, 869, 879
BspQI GCTCTTC 1 cut(s) 189
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 229
BsrDI GCAATG 4 cut(s) 12, 52, 114, 945
BsrFI RCCGGY 1 cut(s) 285
BssAI RCCGGY 1 cut(s) 285
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 6 cut(s) 23, 51, 140, 874, 884, 907
Bst2UI CCWGG 2 cut(s) 439, 1003
Bst6I CTCTTC 2 cut(s) 189, 492
BstAPI GCANNNNNTGC 1 cut(s) 713
BstC8I GCNNGC 4 cut(s) 283, 499, 630, 967
BstDEI CTNAG 3 cut(s) 312, 686, 889
BstENI CCTNNNNNAGG 1 cut(s) 1006
BstF5I GGATG 3 cut(s) 69, 265, 322
BstKTI GATC 6 cut(s) 26, 54, 143, 877, 887, 910
BstMAI GTCTC 3 cut(s) 229, 380, 739
BstMBI GATC 6 cut(s) 23, 51, 140, 874, 884, 907
BstMWI GCNNNNNNNGC 8 cut(s) 35, 498, 521, 530, 610, 656, 713, 949
BstNI CCWGG 2 cut(s) 439, 1003
BstNSI RCATGY 1 cut(s) 285
BstPAI GACNNNNGTC 1 cut(s) 681
BstSCI CCNGG 4 cut(s) 437, 492, 897, 1001
BstSFI CTRYAG 5 cut(s) 30, 379, 602, 963, 1019
BstSLI GKGCMC 2 cut(s) 117, 954
BstV1I GCAGC 7 cut(s) 16, 259, 568, 616, 716, 728, 881
BstX2I RGATCY 1 cut(s) 884
BstYI RGATCY 1 cut(s) 884
Bsu36I CCTNAGG 1 cut(s) 889
BsuI GTATCC 1 cut(s) 895
BsuRI GGCC 2 cut(s) 571, 650
BtsCI GGATG 3 cut(s) 69, 265, 322
BtsI GCAGTG 1 cut(s) 555
BtsIMutI CAGTG 1 cut(s) 555
Cac8I GCNNGC 4 cut(s) 283, 499, 630, 967
CciI TCATGA 1 cut(s) 811
Cfr10I RCCGGY 1 cut(s) 285
Cfr13I GGNCC 1 cut(s) 569
CseI GACGC 2 cut(s) 397, 619
Csp6I GTAC 1 cut(s) 758
CviAII CATG 3 cut(s) 282, 812, 848
CviQI GTAC 1 cut(s) 758
DdeI CTNAG 3 cut(s) 312, 686, 889
DpnI GATC 6 cut(s) 25, 53, 142, 876, 886, 909
DpnII GATC 6 cut(s) 23, 51, 140, 874, 884, 907
Eam1104I CTCTTC 2 cut(s) 189, 492
EarI CTCTTC 2 cut(s) 189, 492
Eco31I GGTCTC 1 cut(s) 229
Eco57I CTGAAG 1 cut(s) 381
Eco81I CCTNAGG 1 cut(s) 889
EcoNI CCTNNNNNAGG 1 cut(s) 1006
EcoRII CCWGG 2 cut(s) 437, 1001
EcoT22I ATGCAT 1 cut(s) 186
Esp3I CGTCTC 1 cut(s) 380
FaeI CATG 3 cut(s) 285, 815, 851
FatI CATG 3 cut(s) 281, 811, 847
FbaI TGATCA 1 cut(s) 907
FblI GTMKAC 1 cut(s) 469
Fnu4HI GCNGC 7 cut(s) 30, 248, 557, 605, 705, 717, 895
FokI GGATG 3 cut(s) 76, 252, 329
Fsp4HI GCNGC 7 cut(s) 30, 248, 557, 605, 705, 717, 895
FspBI CTAG 3 cut(s) 237, 614, 858
GluI GCNGC 7 cut(s) 30, 248, 557, 605, 705, 717, 895
HaeIII GGCC 2 cut(s) 571, 650
HapII CCGG 5 cut(s) 61, 286, 353, 494, 899
HgaI GACGC 2 cut(s) 397, 619
Hin1II CATG 3 cut(s) 285, 815, 851
HindIII AAGCTT 1 cut(s) 1034
HinfI GANTC 2 cut(s) 598, 987
HpaII CCGG 5 cut(s) 61, 286, 353, 494, 899
HphI GGTGA 2 cut(s) 342, 548
Hpy166II GTNNAC 3 cut(s) 470, 952, 974
Hpy188I TCNGA 4 cut(s) 78, 400, 687, 912
Hpy188III TCNNGA 7 cut(s) 102, 144, 191, 212, 419, 812, 882
Hpy8I GTNNAC 3 cut(s) 470, 952, 974
HpyAV CCTTC 7 cut(s) 8, 83, 218, 381, 458, 560, 640
HpyF10VI GCNNNNNNNGC 8 cut(s) 35, 498, 521, 530, 610, 656, 713, 949
HpyF3I CTNAG 3 cut(s) 312, 686, 889
Hsp92II CATG 3 cut(s) 285, 815, 851
Ksp22I TGATCA 1 cut(s) 907
Kzo9I GATC 6 cut(s) 23, 51, 140, 874, 884, 907
LguI GCTCTTC 1 cut(s) 189
LmnI GCTCC 2 cut(s) 443, 529
Lsp1109I GCAGC 7 cut(s) 16, 259, 568, 616, 716, 728, 881
LweI GCATC 5 cut(s) 47, 274, 412, 543, 691
MaeI CTAG 3 cut(s) 237, 614, 858
MalI GATC 6 cut(s) 25, 53, 142, 876, 886, 909
MboI GATC 6 cut(s) 23, 51, 140, 874, 884, 907
MboII GAAGA 6 cut(s) 159, 162, 206, 387, 479, 704
MfeI CAATTG 1 cut(s) 447
MflI RGATCY 1 cut(s) 884
MhlI GDGCHC 3 cut(s) 117, 324, 954
MluCI AATT 2 cut(s) 447, 573
Mph1103I ATGCAT 1 cut(s) 186
MslI CAYNNNNRTG 1 cut(s) 548
MspA1I CMGCKG 2 cut(s) 29, 607
MspI CCGG 5 cut(s) 61, 286, 353, 494, 899
MspR9I CCNGG 4 cut(s) 439, 494, 899, 1003
MunI CAATTG 1 cut(s) 447
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 2 cut(s) 439, 1003
MwoI GCNNNNNNNGC 8 cut(s) 35, 498, 521, 530, 610, 656, 713, 949
NciI CCSGG 2 cut(s) 494, 899
NdeII GATC 6 cut(s) 23, 51, 140, 874, 884, 907
NlaIII CATG 3 cut(s) 285, 815, 851
NlaIV GGNNCC 1 cut(s) 259
NsiI ATGCAT 1 cut(s) 186
NspI RCATGY 1 cut(s) 285
PaeI GCATGC 1 cut(s) 285
PagI TCATGA 1 cut(s) 811
PciSI GCTCTTC 1 cut(s) 189
PctI GAATGC 1 cut(s) 661
PfeI GAWTC 2 cut(s) 598, 987
PkrI GCNGC 7 cut(s) 31, 249, 558, 606, 706, 718, 896
PshAI GACNNNNGTC 1 cut(s) 681
Psp6I CCWGG 2 cut(s) 437, 1001
PspGI CCWGG 2 cut(s) 437, 1001
PspN4I GGNNCC 1 cut(s) 259
PspPI GGNCC 1 cut(s) 569
PstI CTGCAG 3 cut(s) 34, 606, 967
PsuI RGATCY 1 cut(s) 884
PvuII CAGCTG 1 cut(s) 29
RsaI GTAC 1 cut(s) 759
RsaNI GTAC 1 cut(s) 758
RseI CAYNNNNRTG 1 cut(s) 548
SapI GCTCTTC 1 cut(s) 189
SatI GCNGC 7 cut(s) 30, 248, 557, 605, 705, 717, 895
Sau3AI GATC 6 cut(s) 23, 51, 140, 874, 884, 907
Sau96I GGNCC 1 cut(s) 569
ScrFI CCNGG 4 cut(s) 439, 494, 899, 1003
SduI GDGCHC 3 cut(s) 117, 324, 954
SfaNI GCATC 5 cut(s) 47, 274, 412, 543, 691
SfcI CTRYAG 5 cut(s) 30, 379, 602, 963, 1019
SmiMI CAYNNNNRTG 1 cut(s) 548
SphI GCATGC 1 cut(s) 285
Sse9I AATT 2 cut(s) 447, 573
SsiI CCGC 4 cut(s) 404, 607, 679, 969
SspMI CTAG 3 cut(s) 237, 614, 858
StyD4I CCNGG 4 cut(s) 437, 492, 897, 1001
TaqI TCGA 4 cut(s) 101, 190, 243, 772
TaqII GACCGA 1 cut(s) 211
TasI AATT 2 cut(s) 447, 573
TfiI GAWTC 2 cut(s) 598, 987
TscAI CASTG 1 cut(s) 555
TseI GCWGC 7 cut(s) 29, 247, 556, 604, 704, 716, 894
TspDTI ATGAA 2 cut(s) 477, 979
TspRI CASTG 1 cut(s) 555
VneI GTGCAC 1 cut(s) 950
XagI CCTNNNNNAGG 1 cut(s) 1006
XceI RCATGY 1 cut(s) 285
XcmI CCANNNNNNNNNTGG 1 cut(s) 845
XmiI GTMKAC 1 cut(s) 469
XspI CTAG 3 cut(s) 237, 614, 858
Zsp2I ATGCAT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.