CHY zinc finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G18910 AT1G74770 AT1G74770 |
| fragaria_vesca | FvH4_5g15780 FvH4_5g15780 FvH4_5g15780 |
| malus_domestica | MD14G1191800.v1.1 |
| prunus_persica | Prupe.1G314300_v2.0.a1 Prupe.5G184400_v2.0.a1 Prupe.5G184400_v2.0.a1 |
| pyrus_communis | pycom14g15950 |
| rosa_chinensis | RchiOBHm_Chr7g0180341 |
| rosa_laevigata | RLG00000005275 |
| rosa_multiflora | Rmu_sc0003526.1_g000012 Rmu_ssc0000099.1_g000006 |
| rosa_roxburghii | Rroxscaffold_3G00244490 Rroxscaffold_3G00272970 |
| rosa_rugosa | Rorug06G0432400 |
| rosa_samantha | Rh7AG032800 Rh7BG032800 Rh7CG034700 Rh7DG033400 |
| rosa_wichuraiana | Rw7G002740 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 2727 |
| AarI | CACCTGC | 1 cut(s) | 3640 |
| AatII | GACGTC | 3 cut(s) | 827, 1760, 2196 |
| Acc36I | ACCTGC | 3 cut(s) | 508, 2282, 3640 |
| AccB1I | GGYRCC | 1 cut(s) | 2475 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 3626 |
| AccII | CGCG | 4 cut(s) | 216, 263, 552, 3710 |
| AcoI | YGGCCR | 1 cut(s) | 144 |
| AcuI | CTGAAG | 4 cut(s) | 267, 497, 1671, 2604 |
| AcvI | CACGTG | 2 cut(s) | 86, 200 |
| AcyI | GRCGYC | 5 cut(s) | 104, 824, 1757, 2193, 2476 |
| AfaI | GTAC | 8 cut(s) | 272, 340, 690, 1271, 2568, 2779, 2888, 3707 |
| AfiI | CCNNNNNNNGG | 9 cut(s) | 756, 914, 1196, 1308, 2155, 3626, 3721, 3771, 3797 |
| AflII | CTTAAG | 1 cut(s) | 1627 |
| AflIII | ACRYGT | 6 cut(s) | 83, 85, 2259, 2293, 3434, 3581 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2910 |
| AhlI | ACTAGT | 1 cut(s) | 1610 |
| AjnI | CCWGG | 6 cut(s) | 1430, 1742, 1852, 2478, 3067, 3812 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 444, 476 |
| AleI | CACNNNNGTG | 1 cut(s) | 571 |
| Alw21I | GWGCWC | 4 cut(s) | 153, 784, 2267, 2319 |
| Alw26I | GTCTC | 4 cut(s) | 377, 831, 2531, 2608 |
| Alw44I | GTGCAC | 1 cut(s) | 2263 |
| AlwNI | CAGNNNCTG | 2 cut(s) | 2998, 3333 |
| Ama87I | CYCGRG | 1 cut(s) | 3638 |
| AoxI | GGCC | 7 cut(s) | 144, 759, 916, 2321, 3272, 3591, 3712 |
| ApaI | GGGCCC | 1 cut(s) | 3276 |
| ApaLI | GTGCAC | 1 cut(s) | 2263 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 203, 235, 359, 391, 814, 846 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 482, 1137, 1545, 2133, 2295 |
| AspLEI | GCGC | 3 cut(s) | 139, 992, 2478 |
| AspS9I | GGNCC | 7 cut(s) | 759, 1434, 2322, 2738, 3272, 3273, 3712 |
| AsuC2I | CCSGG | 1 cut(s) | 2742 |
| AsuHPI | GGTGA | 3 cut(s) | 2759, 2849, 3520 |
| AsuNHI | GCTAGC | 2 cut(s) | 94, 734 |
| AvaI | CYCGRG | 1 cut(s) | 3638 |
| AvaII | GGWCC | 2 cut(s) | 1434, 2738 |
| BaeGI | GKGCMC | 3 cut(s) | 2267, 3276, 3791 |
| BamHI | GGATCC | 1 cut(s) | 2965 |
| BanI | GGYRCC | 1 cut(s) | 2475 |
| BanII | GRGCYC | 4 cut(s) | 153, 784, 2319, 3276 |
| BauI | CACGAG | 1 cut(s) | 167 |
| BbrPI | CACGTG | 2 cut(s) | 86, 200 |
| BbsI | GAAGAC | 1 cut(s) | 3525 |
| Bbv12I | GWGCWC | 4 cut(s) | 153, 784, 2267, 2319 |
| BccI | CCATC | 8 cut(s) | 308, 908, 1190, 1445, 1857, 2241, 3088, 3190 |
| BceAI | ACGGC | 2 cut(s) | 1126, 2994 |
| BcgI | CGANNNNNNTGC | 8 cut(s) | 97, 131, 530, 564, 2186, 2220, 3619, 3653 |
| BciT130I | CCWGG | 6 cut(s) | 1432, 1744, 1854, 2480, 3069, 3814 |
| BciVI | GTATCC | 1 cut(s) | 893 |
| BclI | TGATCA | 1 cut(s) | 3202 |
| BcnI | CCSGG | 1 cut(s) | 2742 |
| BcoDI | GTCTC | 4 cut(s) | 377, 831, 2531, 2608 |
| BcuI | ACTAGT | 1 cut(s) | 1610 |
| BfaI | CTAG | 7 cut(s) | 95, 209, 336, 350, 735, 774, 1611 |
| BfmI | CTRYAG | 5 cut(s) | 536, 1060, 1126, 2931, 3295 |
| BfoI | RGCGCY | 2 cut(s) | 140, 2479 |
| BfrI | CTTAAG | 1 cut(s) | 1627 |
| BfuAI | ACCTGC | 3 cut(s) | 508, 2282, 3640 |
| BfuI | GTATCC | 1 cut(s) | 893 |
| BglII | AGATCT | 1 cut(s) | 1885 |
| BmcAI | AGTACT | 2 cut(s) | 1271, 2888 |
| Bme1390I | CCNGG | 7 cut(s) | 1432, 1744, 1854, 2480, 2742, 3069, 3814 |
| Bme18I | GGWCC | 2 cut(s) | 1434, 2738 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2910 |
| BmeT110I | CYCGRG | 1 cut(s) | 3638 |
| BmgT120I | GGNCC | 7 cut(s) | 759, 1434, 2322, 2738, 3272, 3273, 3712 |
| BmiI | GGNNCC | 6 cut(s) | 760, 1508, 2477, 2740, 2967, 3274 |
| BmrFI | CCNGG | 7 cut(s) | 1432, 1744, 1854, 2480, 2742, 3069, 3814 |
| BmtI | GCTAGC | 2 cut(s) | 98, 738 |
| BoxI | GACNNNNGTC | 1 cut(s) | 86 |
| BpiI | GAAGAC | 1 cut(s) | 3525 |
| BplI | GAGNNNNNCTC | 6 cut(s) | 179, 211, 1667, 1699, 2588, 2620 |
| BpmI | CTGGAG | 4 cut(s) | 986, 1262, 3525, 3681 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1442 |
| BpuEI | CTTGAG | 4 cut(s) | 239, 629, 1176, 1898 |
| BpuMI | CCSGG | 1 cut(s) | 2742 |
| BsaAI | YACGTR | 2 cut(s) | 86, 200 |
| BsaHI | GRCGYC | 5 cut(s) | 104, 824, 1757, 2193, 2476 |
| BsaI | GGTCTC | 1 cut(s) | 377 |
| BsaJI | CCNNGG | 5 cut(s) | 183, 623, 1290, 2420, 2961 |
| BsaWI | WCCGGW | 1 cut(s) | 907 |
| Bsc4I | CCNNNNNNNGG | 9 cut(s) | 756, 914, 1196, 1308, 2155, 3626, 3721, 3771, 3797 |
| Bse118I | RCCGGY | 2 cut(s) | 791, 1989 |
| Bse1I | ACTGG | 4 cut(s) | 1245, 1801, 3542, 3776 |
| Bse3DI | GCAATG | 5 cut(s) | 670, 745, 3424, 3520, 3742 |
| BseBI | CCWGG | 6 cut(s) | 1432, 1744, 1854, 2480, 3069, 3814 |
| BseDI | CCNNGG | 5 cut(s) | 183, 623, 1290, 2420, 2961 |
| BseLI | CCNNNNNNNGG | 9 cut(s) | 756, 914, 1196, 1308, 2155, 3626, 3721, 3771, 3797 |
| BseMI | GCAATG | 5 cut(s) | 670, 745, 3424, 3520, 3742 |
| BseMII | CTCAG | 6 cut(s) | 113, 1410, 1964, 1992, 2984, 3734 |
| BseNI | ACTGG | 4 cut(s) | 1245, 1801, 3542, 3776 |
| BseRI | GAGGAG | 7 cut(s) | 23, 26, 143, 792, 983, 1568, 2570 |
| BseSI | GKGCMC | 3 cut(s) | 2267, 3276, 3791 |
| BseYI | CCCAGC | 3 cut(s) | 57, 492, 1233 |
| BsgI | GTGCAG | 2 cut(s) | 549, 2263 |
| Bsh1236I | CGCG | 4 cut(s) | 216, 263, 552, 3710 |
| BshFI | GGCC | 7 cut(s) | 146, 761, 918, 2323, 3274, 3593, 3714 |
| BshNI | GGYRCC | 1 cut(s) | 2475 |
| BsiHKAI | GWGCWC | 4 cut(s) | 153, 784, 2267, 2319 |
| BsiHKCI | CYCGRG | 1 cut(s) | 3638 |
| BsiSI | CCGG | 5 cut(s) | 62, 792, 908, 1990, 2742 |
| BslFI | GGGAC | 6 cut(s) | 74, 484, 2724, 3436, 3535, 3656 |
| BslI | CCNNNNNNNGG | 9 cut(s) | 756, 914, 1196, 1308, 2155, 3626, 3721, 3771, 3797 |
| BsmAI | GTCTC | 4 cut(s) | 377, 831, 2531, 2608 |
| BsmBI | CGTCTC | 1 cut(s) | 831 |
| BsmFI | GGGAC | 6 cut(s) | 74, 484, 2724, 3436, 3535, 3656 |
| BsmI | GAATGC | 1 cut(s) | 2342 |
| BsnI | GGCC | 7 cut(s) | 146, 761, 918, 2323, 3274, 3593, 3714 |
| Bso31I | GGTCTC | 1 cut(s) | 377 |
| BsoBI | CYCGRG | 1 cut(s) | 3638 |
| Bsp120I | GGGCCC | 1 cut(s) | 3272 |
| Bsp1286I | GDGCHC | 6 cut(s) | 153, 784, 2267, 2319, 3276, 3791 |
| Bsp1407I | TGTACA | 1 cut(s) | 2777 |
| Bsp68I | TCGCGA | 1 cut(s) | 552 |
| BspANI | GGCC | 7 cut(s) | 146, 761, 918, 2323, 3274, 3593, 3714 |
| BspCNI | CTCAG | 6 cut(s) | 112, 1411, 1963, 1991, 2983, 3733 |
| BspFNI | CGCG | 4 cut(s) | 216, 263, 552, 3710 |
| BspHI | TCATGA | 6 cut(s) | 1324, 1867, 2254, 2460, 3088, 3205 |
| BspLI | GGNNCC | 6 cut(s) | 760, 1508, 2477, 2740, 2967, 3274 |
| BspMAI | CTGCAG | 3 cut(s) | 540, 2935, 3299 |
| BspMI | ACCTGC | 3 cut(s) | 508, 2282, 3640 |
| BspOI | GCTAGC | 2 cut(s) | 98, 738 |
| BspQI | GCTCTTC | 3 cut(s) | 286, 1869, 2346 |
| BspT107I | GGYRCC | 1 cut(s) | 2475 |
| BspTI | CTTAAG | 1 cut(s) | 1627 |
| BspTNI | GGTCTC | 1 cut(s) | 377 |
| BsrDI | GCAATG | 5 cut(s) | 670, 745, 3424, 3520, 3742 |
| BsrFI | RCCGGY | 2 cut(s) | 791, 1989 |
| BsrGI | TGTACA | 1 cut(s) | 2777 |
| BsrI | ACTGG | 4 cut(s) | 1245, 1801, 3542, 3776 |
| BssAI | RCCGGY | 2 cut(s) | 791, 1989 |
| BssECI | CCNNGG | 5 cut(s) | 183, 623, 1290, 2420, 2961 |
| BssNI | GRCGYC | 5 cut(s) | 104, 824, 1757, 2193, 2476 |
| BssSI | CACGAG | 1 cut(s) | 167 |
| BssT1I | CCWWGG | 4 cut(s) | 183, 1290, 2420, 2961 |
| Bst2BI | CACGAG | 1 cut(s) | 167 |
| Bst2UI | CCWGG | 6 cut(s) | 1432, 1744, 1854, 2480, 3069, 3814 |
| Bst6I | CTCTTC | 8 cut(s) | 286, 380, 1690, 1723, 1869, 2346, 2962, 3743 |
| BstACI | GRCGYC | 5 cut(s) | 104, 824, 1757, 2193, 2476 |
| BstAFI | CTTAAG | 1 cut(s) | 1627 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 1174, 3183, 3249, 3333 |
| BstAUI | TGTACA | 1 cut(s) | 2777 |
| BstBAI | YACGTR | 2 cut(s) | 86, 200 |
| BstDSI | CCRYGG | 1 cut(s) | 623 |
| BstEII | GGTNACC | 2 cut(s) | 2747, 2855 |
| BstFNI | CGCG | 4 cut(s) | 216, 263, 552, 3710 |
| BstH2I | RGCGCY | 2 cut(s) | 140, 2479 |
| BstHHI | GCGC | 3 cut(s) | 139, 992, 2478 |
| BstMAI | GTCTC | 4 cut(s) | 377, 831, 2531, 2608 |
| BstNI | CCWGG | 6 cut(s) | 1432, 1744, 1854, 2480, 3069, 3814 |
| BstNSI | RCATGY | 9 cut(s) | 2180, 2263, 2297, 3282, 3438, 3451, 3477, 3585, 3649 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 86 |
| BstPI | GGTNACC | 2 cut(s) | 2747, 2855 |
| BstSCI | CCNGG | 7 cut(s) | 1430, 1742, 1852, 2478, 2740, 3067, 3812 |
| BstSFI | CTRYAG | 5 cut(s) | 536, 1060, 1126, 2931, 3295 |
| BstSLI | GKGCMC | 3 cut(s) | 2267, 3276, 3791 |
| BstUI | CGCG | 4 cut(s) | 216, 263, 552, 3710 |
| BstV2I | GAAGAC | 1 cut(s) | 3525 |
| BstX2I | RGATCY | 6 cut(s) | 613, 1616, 1885, 2587, 2965, 3330 |
| BstYI | RGATCY | 6 cut(s) | 613, 1616, 1885, 2587, 2965, 3330 |
| BsuI | GTATCC | 1 cut(s) | 893 |
| BsuRI | GGCC | 7 cut(s) | 146, 761, 918, 2323, 3274, 3593, 3714 |
| BtgI | CCRYGG | 1 cut(s) | 623 |
| BtsI | GCAGTG | 2 cut(s) | 274, 2214 |
| BtuMI | TCGCGA | 1 cut(s) | 552 |
| BveI | ACCTGC | 3 cut(s) | 508, 2282, 3640 |
| CaiI | CAGNNNCTG | 2 cut(s) | 2998, 3333 |
| CciI | TCATGA | 6 cut(s) | 1324, 1867, 2254, 2460, 3088, 3205 |
| CfoI | GCGC | 3 cut(s) | 139, 992, 2478 |
| Cfr10I | RCCGGY | 2 cut(s) | 791, 1989 |
| Cfr13I | GGNCC | 7 cut(s) | 759, 1434, 2322, 2738, 3272, 3273, 3712 |
| CseI | GACGC | 2 cut(s) | 112, 2441 |
| Csp6I | GTAC | 8 cut(s) | 271, 339, 689, 1270, 2567, 2778, 2887, 3706 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1359, 1394, 2190, 2225 |
| CviQI | GTAC | 8 cut(s) | 271, 339, 689, 1270, 2567, 2778, 2887, 3706 |
| DinI | GGCGCC | 1 cut(s) | 2477 |
| DraI | TTTAAA | 1 cut(s) | 2332 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2910 |
| EaeI | YGGCCR | 1 cut(s) | 144 |
| Eam1104I | CTCTTC | 8 cut(s) | 286, 380, 1690, 1723, 1869, 2346, 2962, 3743 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2910 |
| EarI | CTCTTC | 8 cut(s) | 286, 380, 1690, 1723, 1869, 2346, 2962, 3743 |
| EciI | GGCGGA | 1 cut(s) | 152 |
| Ecl136II | GAGCTC | 3 cut(s) | 151, 782, 2317 |
| Eco130I | CCWWGG | 4 cut(s) | 183, 1290, 2420, 2961 |
| Eco147I | AGGCCT | 1 cut(s) | 3593 |
| Eco24I | GRGCYC | 4 cut(s) | 153, 784, 2319, 3276 |
| Eco31I | GGTCTC | 1 cut(s) | 377 |
| Eco32I | GATATC | 1 cut(s) | 2145 |
| Eco47I | GGWCC | 2 cut(s) | 1434, 2738 |
| Eco53kI | GAGCTC | 3 cut(s) | 151, 782, 2317 |
| Eco57I | CTGAAG | 4 cut(s) | 267, 497, 1671, 2604 |
| Eco72I | CACGTG | 2 cut(s) | 86, 200 |
| Eco88I | CYCGRG | 1 cut(s) | 3638 |
| Eco91I | GGTNACC | 2 cut(s) | 2747, 2855 |
| EcoICRI | GAGCTC | 3 cut(s) | 151, 782, 2317 |
| EcoO109I | RGGNCCY | 2 cut(s) | 759, 2738 |
| EcoO65I | GGTNACC | 2 cut(s) | 2747, 2855 |
| EcoRI | GAATTC | 3 cut(s) | 482, 769, 1702 |
| EcoRII | CCWGG | 6 cut(s) | 1430, 1742, 1852, 2478, 3067, 3812 |
| EcoRV | GATATC | 1 cut(s) | 2145 |
| EcoT14I | CCWWGG | 4 cut(s) | 183, 1290, 2420, 2961 |
| EcoT22I | ATGCAT | 2 cut(s) | 2378, 3676 |
| EcoT38I | GRGCYC | 4 cut(s) | 153, 784, 2319, 3276 |
| EgeI | GGCGCC | 1 cut(s) | 2477 |
| EheI | GGCGCC | 1 cut(s) | 2477 |
| ErhI | CCWWGG | 4 cut(s) | 183, 1290, 2420, 2961 |
| Esp3I | CGTCTC | 1 cut(s) | 831 |
| FaqI | GGGAC | 6 cut(s) | 74, 484, 2724, 3436, 3535, 3656 |
| FauI | CCCGC | 2 cut(s) | 99, 3703 |
| FauNDI | CATATG | 2 cut(s) | 498, 2985 |
| FbaI | TGATCA | 1 cut(s) | 3202 |
| FriOI | GRGCYC | 4 cut(s) | 153, 784, 2319, 3276 |
| FspBI | CTAG | 7 cut(s) | 95, 209, 336, 350, 735, 774, 1611 |
| GlaI | GCGC | 3 cut(s) | 138, 991, 2477 |
| GsaI | CCCAGC | 3 cut(s) | 61, 496, 1237 |
| GsuI | CTGGAG | 4 cut(s) | 986, 1262, 3525, 3681 |
| HaeII | RGCGCY | 2 cut(s) | 140, 2479 |
| HaeIII | GGCC | 7 cut(s) | 146, 761, 918, 2323, 3274, 3593, 3714 |
| HapII | CCGG | 5 cut(s) | 62, 792, 908, 1990, 2742 |
| HgaI | GACGC | 2 cut(s) | 112, 2441 |
| HhaI | GCGC | 3 cut(s) | 139, 992, 2478 |
| Hin1I | GRCGYC | 5 cut(s) | 104, 824, 1757, 2193, 2476 |
| Hin6I | GCGC | 3 cut(s) | 137, 990, 2476 |
| HinP1I | GCGC | 3 cut(s) | 137, 990, 2476 |
| HindIII | AAGCTT | 2 cut(s) | 1226, 3140 |
| HpaII | CCGG | 5 cut(s) | 62, 792, 908, 1990, 2742 |
| HphI | GGTGA | 3 cut(s) | 2759, 2849, 3520 |
| Hpy166II | GTNNAC | 5 cut(s) | 627, 1133, 2265, 2630, 3119 |
| Hpy8I | GTNNAC | 5 cut(s) | 627, 1133, 2265, 2630, 3119 |
| Hpy99I | CGWCG | 3 cut(s) | 14, 17, 2198 |
| HpyCH4IV | ACGT | 6 cut(s) | 85, 199, 824, 1155, 1757, 2193 |
| HpySE526I | ACGT | 6 cut(s) | 85, 199, 824, 1155, 1757, 2193 |
| Hsp92I | GRCGYC | 5 cut(s) | 104, 824, 1757, 2193, 2476 |
| HspAI | GCGC | 3 cut(s) | 137, 990, 2476 |
| KasI | GGCGCC | 1 cut(s) | 2475 |
| KroI | GCCGGC | 2 cut(s) | 791, 1989 |
| KroNI | GCCGGC | 2 cut(s) | 793, 1991 |
| Ksp22I | TGATCA | 1 cut(s) | 3202 |
| LguI | GCTCTTC | 3 cut(s) | 286, 1869, 2346 |
| LmnI | GCTCC | 5 cut(s) | 156, 779, 970, 1675, 3766 |
| MaeI | CTAG | 7 cut(s) | 95, 209, 336, 350, 735, 774, 1611 |
| MaeII | ACGT | 6 cut(s) | 85, 199, 824, 1155, 1757, 2193 |
| MfeI | CAATTG | 1 cut(s) | 684 |
| MflI | RGATCY | 6 cut(s) | 613, 1616, 1885, 2587, 2965, 3330 |
| MhlI | GDGCHC | 6 cut(s) | 153, 784, 2267, 2319, 3276, 3791 |
| Mly113I | GGCGCC | 1 cut(s) | 2476 |
| MlyI | GAGTC | 7 cut(s) | 74, 374, 945, 1253, 1730, 2567, 2948 |
| MmeI | TCCRAC | 5 cut(s) | 1935, 2023, 2993, 3376, 3648 |
| Mph1103I | ATGCAT | 2 cut(s) | 2378, 3676 |
| MroNI | GCCGGC | 2 cut(s) | 791, 1989 |
| MroXI | GAANNNNTTC | 5 cut(s) | 482, 1137, 1545, 2133, 2295 |
| MseI | TTAA | 8 cut(s) | 870, 1053, 1263, 1469, 1592, 1628, 2331, 3038 |
| MslI | CAYNNNNRTG | 2 cut(s) | 571, 3650 |
| MspA1I | CMGCKG | 2 cut(s) | 1336, 2239 |
| MspCI | CTTAAG | 1 cut(s) | 1627 |
| MspI | CCGG | 5 cut(s) | 62, 792, 908, 1990, 2742 |
| MspR9I | CCNGG | 7 cut(s) | 1432, 1744, 1854, 2480, 2742, 3069, 3814 |
| MunI | CAATTG | 1 cut(s) | 684 |
| Mva1269I | GAATGC | 1 cut(s) | 2342 |
| MvaI | CCWGG | 6 cut(s) | 1432, 1744, 1854, 2480, 3069, 3814 |
| MvnI | CGCG | 4 cut(s) | 216, 263, 552, 3710 |
| NaeI | GCCGGC | 2 cut(s) | 793, 1991 |
| NarI | GGCGCC | 1 cut(s) | 2476 |
| NciI | CCSGG | 1 cut(s) | 2742 |
| NdeI | CATATG | 2 cut(s) | 498, 2985 |
| NgoMIV | GCCGGC | 2 cut(s) | 791, 1989 |
| NheI | GCTAGC | 2 cut(s) | 94, 734 |
| NlaIV | GGNNCC | 6 cut(s) | 760, 1508, 2477, 2740, 2967, 3274 |
| NmeAIII | GCCGAG | 3 cut(s) | 172, 1925, 3416 |
| NmuCI | GTSAC | 7 cut(s) | 169, 200, 2482, 2747, 2855, 2951, 3633 |
| NruI | TCGCGA | 1 cut(s) | 552 |
| NsiI | ATGCAT | 2 cut(s) | 2378, 3676 |
| NspI | RCATGY | 9 cut(s) | 2180, 2263, 2297, 3282, 3438, 3451, 3477, 3585, 3649 |
| OliI | CACNNNNGTG | 1 cut(s) | 571 |
| PagI | TCATGA | 6 cut(s) | 1324, 1867, 2254, 2460, 3088, 3205 |
| PaqCI | CACCTGC | 1 cut(s) | 3640 |
| PceI | AGGCCT | 1 cut(s) | 3593 |
| PciI | ACATGT | 4 cut(s) | 2259, 2293, 3434, 3581 |
| PciSI | GCTCTTC | 3 cut(s) | 286, 1869, 2346 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 375 |
| PctI | GAATGC | 1 cut(s) | 2342 |
| PdiI | GCCGGC | 2 cut(s) | 793, 1991 |
| PdmI | GAANNNNTTC | 5 cut(s) | 482, 1137, 1545, 2133, 2295 |
| PfeI | GAWTC | 8 cut(s) | 17, 1006, 1013, 1427, 1463, 1995, 2198, 2678 |
| PflFI | GACNNNGTC | 1 cut(s) | 2045 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 3626 |
| PfoI | TCCNGGA | 1 cut(s) | 2740 |
| PleI | GAGTC | 7 cut(s) | 73, 374, 944, 1252, 1730, 2566, 2948 |
| PluTI | GGCGCC | 1 cut(s) | 2479 |
| PmaCI | CACGTG | 2 cut(s) | 86, 200 |
| PmlI | CACGTG | 2 cut(s) | 86, 200 |
| PpsI | GAGTC | 7 cut(s) | 73, 374, 944, 1252, 1730, 2566, 2948 |
| Ppu21I | YACGTR | 2 cut(s) | 86, 200 |
| PpuMI | RGGWCCY | 1 cut(s) | 2738 |
| PscI | ACATGT | 4 cut(s) | 2259, 2293, 3434, 3581 |
| PshAI | GACNNNNGTC | 1 cut(s) | 86 |
| PsiI | TTATAA | 1 cut(s) | 2727 |
| Psp124BI | GAGCTC | 3 cut(s) | 153, 784, 2319 |
| Psp5II | RGGWCCY | 1 cut(s) | 2738 |
| Psp6I | CCWGG | 6 cut(s) | 1430, 1742, 1852, 2478, 3067, 3812 |
| PspCI | CACGTG | 2 cut(s) | 86, 200 |
| PspEI | GGTNACC | 2 cut(s) | 2747, 2855 |
| PspFI | CCCAGC | 3 cut(s) | 57, 492, 1233 |
| PspGI | CCWGG | 6 cut(s) | 1430, 1742, 1852, 2478, 3067, 3812 |
| PspN4I | GGNNCC | 6 cut(s) | 760, 1508, 2477, 2740, 2967, 3274 |
| PspOMI | GGGCCC | 1 cut(s) | 3272 |
| PspPI | GGNCC | 7 cut(s) | 759, 1434, 2322, 2738, 3272, 3273, 3712 |
| PspPPI | RGGWCCY | 1 cut(s) | 2738 |
| PstI | CTGCAG | 3 cut(s) | 540, 2935, 3299 |
| PstNI | CAGNNNCTG | 2 cut(s) | 2998, 3333 |
| PsuI | RGATCY | 6 cut(s) | 613, 1616, 1885, 2587, 2965, 3330 |
| PsyI | GACNNNGTC | 1 cut(s) | 2045 |
| PvuII | CAGCTG | 2 cut(s) | 1336, 2239 |
| RruI | TCGCGA | 1 cut(s) | 552 |
| RsaI | GTAC | 8 cut(s) | 272, 340, 690, 1271, 2568, 2779, 2888, 3707 |
| RsaNI | GTAC | 8 cut(s) | 271, 339, 689, 1270, 2567, 2778, 2887, 3706 |
| RseI | CAYNNNNRTG | 2 cut(s) | 571, 3650 |
| SacI | GAGCTC | 3 cut(s) | 153, 784, 2319 |
| SapI | GCTCTTC | 3 cut(s) | 286, 1869, 2346 |
| SaqAI | TTAA | 8 cut(s) | 870, 1053, 1263, 1469, 1592, 1628, 2331, 3038 |
| Sau96I | GGNCC | 7 cut(s) | 759, 1434, 2322, 2738, 3272, 3273, 3712 |
| ScaI | AGTACT | 2 cut(s) | 1271, 2888 |
| SchI | GAGTC | 7 cut(s) | 74, 374, 945, 1253, 1730, 2567, 2948 |
| ScrFI | CCNGG | 7 cut(s) | 1432, 1744, 1854, 2480, 2742, 3069, 3814 |
| SduI | GDGCHC | 6 cut(s) | 153, 784, 2267, 2319, 3276, 3791 |
| SfcI | CTRYAG | 5 cut(s) | 536, 1060, 1126, 2931, 3295 |
| SfoI | GGCGCC | 1 cut(s) | 2477 |
| SinI | GGWCC | 2 cut(s) | 1434, 2738 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 571, 3650 |
| SmlI | CTYRAG | 5 cut(s) | 254, 608, 1191, 1627, 1913 |
| SmoI | CTYRAG | 5 cut(s) | 254, 608, 1191, 1627, 1913 |
| SpeI | ACTAGT | 1 cut(s) | 1610 |
| SseBI | AGGCCT | 1 cut(s) | 3593 |
| SspDI | GGCGCC | 1 cut(s) | 2475 |
| SspI | AATATT | 3 cut(s) | 1569, 2403, 3342 |
| SspMI | CTAG | 7 cut(s) | 95, 209, 336, 350, 735, 774, 1611 |
| SstI | GAGCTC | 3 cut(s) | 153, 784, 2319 |
| StuI | AGGCCT | 1 cut(s) | 3593 |
| StyD4I | CCNGG | 7 cut(s) | 1430, 1742, 1852, 2478, 2740, 3067, 3812 |
| StyI | CCWWGG | 4 cut(s) | 183, 1290, 2420, 2961 |
| TaiI | ACGT | 6 cut(s) | 88, 202, 827, 1158, 1760, 2196 |
| TaqI | TCGA | 5 cut(s) | 156, 378, 383, 2196, 2624 |
| TatI | WGTACW | 4 cut(s) | 338, 1269, 2777, 2886 |
| TauI | GCSGC | 3 cut(s) | 9, 182, 241 |
| TfiI | GAWTC | 8 cut(s) | 17, 1006, 1013, 1427, 1463, 1995, 2198, 2678 |
| Tru1I | TTAA | 8 cut(s) | 870, 1053, 1263, 1469, 1592, 1628, 2331, 3038 |
| Tru9I | TTAA | 8 cut(s) | 870, 1053, 1263, 1469, 1592, 1628, 2331, 3038 |
| TseFI | GTSAC | 7 cut(s) | 169, 200, 2482, 2747, 2855, 2951, 3633 |
| Tsp45I | GTSAC | 7 cut(s) | 169, 200, 2482, 2747, 2855, 2951, 3633 |
| TspGWI | ACGGA | 1 cut(s) | 612 |
| Tth111I | GACNNNGTC | 1 cut(s) | 2045 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 3626 |
| Vha464I | CTTAAG | 1 cut(s) | 1627 |
| VneI | GTGCAC | 1 cut(s) | 2263 |
| VpaK11BI | GGWCC | 2 cut(s) | 1434, 2738 |
| XbaI | TCTAGA | 1 cut(s) | 773 |
| XceI | RCATGY | 9 cut(s) | 2180, 2263, 2297, 3282, 3438, 3451, 3477, 3585, 3649 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 181, 893 |
| XmnI | GAANNNNTTC | 5 cut(s) | 482, 1137, 1545, 2133, 2295 |
| XspI | CTAG | 7 cut(s) | 95, 209, 336, 350, 735, 774, 1611 |
| ZraI | GACGTC | 3 cut(s) | 825, 1758, 2194 |
| ZrmI | AGTACT | 2 cut(s) | 1271, 2888 |
| Zsp2I | ATGCAT | 2 cut(s) | 2378, 3676 |