Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0008770

Physical Location & Seq

Genomic Coordinates Reverse (-)

66456759 .. 66463429

Gene Structure 6671 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000005275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3777 bp

ATGGGCGGCGACAGTCACGACACCACCCGGCTGGACTGTTCCTCGTCTTCTTCTTCGTCGTCTTTGTCTTCCGAGTCGCCAGTCCGGCTCGCTCAGACGCCGATTCTGTTGCTGGTTTGCTTCCACAAGGCGATGCGAGCCGATCTCGCCGATCTCCTCCACGTCACCGAGGCCGCCTTGGACGGTGGATTCAGAGGCCGCGGCTTTGTTCTCGAGGTTCTGCGACGGTTTGAGTTCCTCAAGCTCGCGTATCAGTACCACTGCTCTGCTGAGGATGAGGTTATTTTTCTAGCGCTAGATGGACGAACAAAAAACATAGCTTGTACATATTCGTTGGAGCATAGGAGTATAGATGGTCTTTTTGAATCTATTTTTAGTCGTTTGGATGTATTGTTAGAGGAAAGTAAAGATATTTCAAAGGAATTTCAGGAACTTGTGTTCTGCATCGGGACGCTCCAGGCATTCATTTGCCAGCATATGGTGAAAGAAGAAGAACAGGTTTTTCCTTTGCTCCTGCAGCAATTCTCTGTGAAGGAGCAGGCTTCACTTGTGTGGCAGTTCATGTGTAGTATGCCTTTAGTGCTGCTAGAGGATCTTCTACCATGGATGATCTCCTCTCTTCAAACTGATGAAAAAGAGGAAGTCATACATTGCATAAAAGAAATTGTACCTGATGAAAAATATCTCCAAGAGGTAGTAAGCTCATGGCTTGCTAACAAGGGCCAGGCTCGACACACTGGTGATGATGAATCTGCAGATATGAAAAAGTTACTCAAGTCTCATTCCCCTAAGAGGTTCTTTAAAGAAAATTGGAGTTGCATGAAGAAAGACAGCATCCAAACTGATACTGGATACAGTCCTGTTGATGGGCTTCATCTTTGGCATGGTGCCATAAGGAAAGATCTAGAAAAAATTATGGGAGAGCTTTATCAATTGAGAAGCTCAGTCAATTTTCTAGATATTGATTCAATAGTTGTCCAGCTAAAGTTTCTTGCTGATGTCCTTACTTTCTACAGCAATGCATTGGAGAAGTTAGTTCACCCTGTGTTAAGTGAACTTGTCAATGGCTGTCTGTACCCTTCTATTGAGAAATTTCCCAATGAAAGCCTTCTGGAAAGTTTGCAGAATTTACTATACTACAGCCTTGAAAATGGAACACCTTTGGGCAAATTTGTTGAAAAGCTTTGCCGGGAATTTGAGTGTCTTGTGGTGGGAGTCTGCAAGCATTTTGCTGTCCACGAAACAGAGGTATTTCCCATTATAAGGAAGAACTGTAGCCATGAAATGCAACAGCAACTTGTGTATGTCAGCCTTCATATTATGCCACTTGGGTTGCTGAAGTGTGTGACTACTTGGTTTTCAGCTTGCTTATCTGAGGATGAGTCCAGGTCAATTCTTAGCAGCATGAAGCAGCGAGATTTCTTAGTCAATGAATCTTTTGTATCCCTGTTACATGAGTGGTTCCGTATCGGCCATTCAGGTAAAACCTCAATTGAAAATTTCCGAGAGGACTTGCAGCAAATATTCAAGAGCAGATGCACTTTCTTATGTAACCAATTACATGCCAGTACTGCGTGTTCATCTGTAATCTCCAATATGCAACATCAAGGGAAATCAAACACTCGGGTAATGGAACTAATTTCTTCAAACAAGGGAAAGAACTCTATGCGATACTCTTCATCTTTTGCCCCCGACTCTTCTAAGTATTCTGAGATGACAAACTCAAGAGGAATCAATCTCCAAGTATACTTCTCTGGAATGAAAACATCATATCGTATTTCTGAAAGTCTTAGTGGAGAAAATTTGAGTGGTTATGGTCTCCATGAACCAAAACCAATAGATCTCATATTTTTCTTCCACAAGGCTCTCAGGAAGGATTTGGATTACCTTGTCCTTGGTTCAGCTGAGTTGGCTGAAAATGCAGCTTCCCTCACAGATTTTTGCCGGCGCTTTAGTCTCATTCAGTTCTTACATCAAATACATAGTGAAGCAGAGGACGAGGTTGCCTTTCCAGCCTTGGAGGCAAAGGGAAAATGTCAAAACATTAGCCAGTCTTACACACTGGACCACAAACTAGAGGTTGAACTCTTCCAAAAAATATCCTTCATTCTAGATGAGATGTCTAAATTGCATTTTTCAGTTTCTATGGTTGATTCAAACACAATGGACCAGATGTCGCCAAAGCACTATCAGTTGTGCATGAGGCTTCATGGTATTTGCAAATGTATGAGCAAATTACTGACTGACCATATTCATCGTGAAGAAGTTGAACTTTGGCCCTTGTTTAGAGAATGCTTCTCCATTGAAGAGCAAGAAAGGATCGTGGGGTGCATACTTGGTAGAACAGAAGCGAAAATATTACAAGATATGATACCCTGGCTGATGGAATCTTTGACACCAGAAGAACAGCATGCCATGATATCTATATGGCGCCAGGTCACAAGAAACACAATGTTTGATGAGTGGTTGAAAGAATGGTGGGAGGGGTATGATGCAGGCAAGGTGGTGCAGGTGTCAAGTTTTCCTCCTTCAAAGACTGTAGATCCCTTGGACGTTGTCTCTACGTACTTGTGTGGACTGGATGAACAAGAAAGAAGTGTCTTCAACAGAAGCATCGACTTTCCCGAAAAAGATTCCCCTGATACTAATACTAAGCCATTACAAATCAGTGAGGTGAATCATAAGCTGAGGGATGATGATAATCACCAATGTAATTACAACTCTACAGAATCTGGAAGTCTTGCAGAAGGTAAGAAGATGAAGTATGAAGACATTGAAAATGTCATAGATCAAATCAATGATCGAGGACAACTTTTTCAAGCAAGTCAGAAAACGGATTATTGTGAGTGCCTGCTGACACTAAGTCAAGAGGATCTGTTGACTACAATAAGTAAAATCTCCCGTGACTCTTCCTTGGATCCTCAGAAGAAACCATATATGATGCAGAGCTTGCTATCGAGCCATTGGAGAGTCAGACAACACTCTCAGTTGACTGTTGCAAGTAATGGGAAAGAATTCACTGGTCAGCATCCATCCTATCAGGACCCTTTTGGGCTAACATTTGGTTGTAAACACTATAAGAGGAACTGTAAGCTTGTTGCTCCATGTTGCAACCAGCTCTACACTTGCATACGCTGCCATGATGAGATGGCCAATCACACTATAGATAGGAGATCTGTAACAAAGATGATGTGCATGAAATGCTTGAAAATTCAGCCAATCGGGCCCACATGCTCAACTGCATCCTGCAGTGATTTATCTATGGCAAGATACTTTTGCAAAATCTGCAAAATTTTTGATGATGAAAGGATGATCTACCATTGCCCGTACTGTAACTTGTGCCGAGTTGGAAAGGGATTGGGTATTGACTATTTCCATTGCATGACTTGTAATGCTTGCATGTCCTGTTCTCTCTTCAAGCATACATGCAGAGAGAAAAGCTTTATGGATAATTGCCCTATTTGCCATGAGGACATCTTCACGAGCAACTCTCCAGTAAAAGCCCTCCCATGTGGTCATTCAATGCACTCAACATGTTTTCAGGCCTACACCTTTACTAATTATACCTGCCCAATCTGCGGCAAGTCACTTGGGGACATGCAGATGTTATTTAGAATGTATGATGCATATTTGGCTGGAGAGAAGCTTCCAGATGAGTATTCTGGCCGAACTCAGGCCATACTATGCAATGACTGTGAGAAGAAAGGAACTGCTCCCTTTCATTGGCTTTACCACAAGTGCTCCTCTTGCGGTTCATACAATACCAGGCTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010106 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019725 GO:0019787 GO:0019941 GO:0030003 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033554 GO:0036211 GO:0042592 GO:0042594 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051603 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1259

Amino Acids

144.03

Weight (kDa)

5.92

Isoelectric Point (pI)

48.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	41 - 171	1.8e-07	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	1023 - 1091	9.1e-18	CHY zinc finger
zf-RING_2	PF13639	1150 - 1193	3.7e-09	Ring finger domain
zinc_ribbon_6	PF14599	1199 - 1256	1.3e-22	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18910 AT1G74770 AT1G74770
fragaria_vesca	FvH4_5g15780 FvH4_5g15780 FvH4_5g15780
malus_domestica	MD14G1191800.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.5G184400_v2.0.a1 Prupe.5G184400_v2.0.a1
pyrus_communis	pycom14g15950
rosa_chinensis	RchiOBHm_Chr7g0180341
rosa_laevigata	RLG00000005275
rosa_multiflora	Rmu_sc0003526.1_g000012 Rmu_ssc0000099.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244490 Rroxscaffold_3G00272970
rosa_rugosa	Rorug06G0432400
rosa_samantha	Rh7AG032800 Rh7BG032800 Rh7CG034700 Rh7DG033400
rosa_wichuraiana	Rw7G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1262
AarI	CACCTGC	1 cut(s)	2500
Acc36I	ACCTGC	2 cut(s)	2500, 3575
AccB1I	GGYRCC	2 cut(s)	887, 2430
AccB7I	CCANNNNNTGG	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	1746
AccII	CGCG	2 cut(s)	201, 248
AciI	CCGC	6 cut(s)	6, 174, 199, 201, 3579, 3750
AclWI	GGATC	6 cut(s)	600, 2327, 2537, 2880, 2912, 2925
AcoI	YGGCCR	3 cut(s)	1471, 3150, 3664
AcuI	CTGAAG	1 cut(s)	1358
AcyI	GRCGYC	2 cut(s)	98, 2431
AdeI	CACNNNGTG	1 cut(s)	1045
AfaI	GTAC	7 cut(s)	257, 325, 669, 1076, 1570, 2567, 3329
AfeI	AGCGCT	1 cut(s)	294
AfiI	CCNNNNNNNGG	7 cut(s)	478, 792, 866, 1263, 3578, 3673, 3723
AflIII	ACRYGT	1 cut(s)	3533
AhdI	GACNNNNNGTC	2 cut(s)	2173, 2862
AjiI	CACGTC	1 cut(s)	163
AjnI	CCWGG	6 cut(s)	456, 723, 1385, 2375, 2433, 3764
AleI	CACNNNNGTG	2 cut(s)	550, 738
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
Alw21I	GWGCWC	1 cut(s)	3743
Alw26I	GTCTC	4 cut(s)	783, 1823, 1961, 2563
AlwI	GGATC	6 cut(s)	600, 2327, 2537, 2880, 2912, 2925
AlwNI	CAGNNNCTG	1 cut(s)	2732
Ama87I	CYCGRG	2 cut(s)	212, 1623
Aor51HI	AGCGCT	1 cut(s)	294
ApaI	GGGCCC	1 cut(s)	3228
ApeKI	GCWGC	7 cut(s)	517, 583, 1401, 1411, 1516, 1922, 3135
Asp700I	GAANNNNTTC	2 cut(s)	1107, 3014
AspLEI	GCGC	3 cut(s)	295, 1950, 2433
AspS9I	GGNCC	7 cut(s)	721, 2065, 2167, 2277, 3043, 3224, 3225
AsuC2I	CCSGG	2 cut(s)	28, 1190
AsuHPI	GGTGA	6 cut(s)	157, 493, 752, 1031, 2686, 2696
AvaI	CYCGRG	2 cut(s)	212, 1623
AvaII	GGWCC	3 cut(s)	2065, 2167, 3043
BaeGI	GKGCMC	1 cut(s)	3228
BalI	TGGCCA	1 cut(s)	3152
BamHI	GGATCC	1 cut(s)	2917
BanI	GGYRCC	2 cut(s)	887, 2430
BanII	GRGCYC	1 cut(s)	3228
BauI	CACGAG	1 cut(s)	3481
BbsI	GAAGAC	4 cut(s)	39, 60, 2593, 2775
Bbv12I	GWGCWC	1 cut(s)	3743
BbvCI	CCTCAGC	2 cut(s)	270, 2687
BbvI	GCAGC	7 cut(s)	529, 570, 1413, 1423, 1528, 1934, 3122
BccI	CCATC	6 cut(s)	293, 347, 860, 2377, 3040, 3142
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	6 cut(s)	458, 725, 1387, 2377, 2435, 3766
BciVI	GTATCC	2 cut(s)	845, 1453
BcnI	CCSGG	2 cut(s)	28, 1190
BcoDI	GTCTC	4 cut(s)	783, 1823, 1961, 2563
BfaI	CTAG	7 cut(s)	290, 296, 587, 905, 956, 2075, 2111
BfmI	CTRYAG	9 cut(s)	515, 753, 1012, 1138, 1273, 2538, 2724, 3162, 3247
BfoI	RGCGCY	3 cut(s)	296, 1951, 2434
BfuAI	ACCTGC	2 cut(s)	2500, 3575
BfuI	GTATCC	2 cut(s)	845, 1453
BglI	GCCNNNNNGGC	3 cut(s)	85, 2021, 3223
BglII	AGATCT	3 cut(s)	901, 1840, 3173
BmcAI	AGTACT	1 cut(s)	1570
Bme1390I	CCNGG	8 cut(s)	28, 458, 725, 1190, 1387, 2377, 2435, 3766
Bme18I	GGWCC	3 cut(s)	2065, 2167, 3043
BmeRI	GACNNNNNGTC	2 cut(s)	2173, 2862
BmeT110I	CYCGRG	2 cut(s)	212, 1623
BmgBI	CACGTC	1 cut(s)	163
BmgT120I	GGNCC	7 cut(s)	721, 2065, 2167, 2277, 3043, 3224, 3225
BmiI	GGNNCC	6 cut(s)	889, 1463, 2432, 2919, 3045, 3226
BmrFI	CCNGG	8 cut(s)	28, 458, 725, 1190, 1387, 2377, 2435, 3766
BpiI	GAAGAC	4 cut(s)	39, 60, 2593, 2775
BplI	GAGNNNNNCTC	4 cut(s)	129, 161, 3475, 3507
BpmI	CTGGAG	3 cut(s)	440, 3477, 3657
Bpu10I	CCTNAGC	2 cut(s)	270, 2687
BpuEI	CTTGAG	3 cut(s)	224, 758, 1708
BpuMI	CCSGG	2 cut(s)	28, 1190
BsaAI	YACGTR	1 cut(s)	2565
BsaBI	GATNNNNATC	1 cut(s)	2700
BsaHI	GRCGYC	2 cut(s)	98, 2431
BsaI	GGTCTC	1 cut(s)	1823
BsaJI	CCNNGG	9 cut(s)	168, 177, 199, 602, 1894, 2016, 2375, 2547, 2913
BsaXI	ACNNNNNCTCC	2 cut(s)	3725, 3755
Bsc4I	CCNNNNNNNGG	7 cut(s)	478, 792, 866, 1263, 3578, 3673, 3723
Bse118I	RCCGGY	1 cut(s)	1944
Bse1I	ACTGG	9 cut(s)	80, 742, 853, 1566, 2050, 2067, 2583, 3025, 3494
Bse3DI	GCAATG	5 cut(s)	649, 1024, 3319, 3376, 3694
Bse8I	GATNNNNATC	1 cut(s)	2700
BseBI	CCWGG	6 cut(s)	458, 725, 1387, 2377, 2435, 3766
BseDI	CCNNGG	9 cut(s)	168, 177, 199, 602, 1894, 2016, 2375, 2547, 2913
BseJI	GATNNNNATC	1 cut(s)	2700
BseLI	CCNNNNNNNGG	7 cut(s)	478, 792, 866, 1263, 3578, 3673, 3723
BseMI	GCAATG	5 cut(s)	649, 1024, 3319, 3376, 3694
BseNI	ACTGG	9 cut(s)	80, 742, 853, 1566, 2050, 2067, 2583, 3025, 3494
BseRI	GAGGAG	3 cut(s)	146, 604, 3733
BseSI	GKGCMC	1 cut(s)	3228
BseXI	GCAGC	7 cut(s)	529, 570, 1413, 1423, 1528, 1934, 3122
BsgI	GTGCAG	1 cut(s)	2528
Bsh1236I	CGCG	2 cut(s)	201, 248
BshNI	GGYRCC	2 cut(s)	887, 2430
BsiHKAI	GWGCWC	1 cut(s)	3743
BsiHKCI	CYCGRG	2 cut(s)	212, 1623
BsiSI	CCGG	4 cut(s)	28, 85, 1189, 1945
BslFI	GGGAC	2 cut(s)	463, 3608
BslI	CCNNNNNNNGG	7 cut(s)	478, 792, 866, 1263, 3578, 3673, 3723
BsmAI	GTCTC	4 cut(s)	783, 1823, 1961, 2563
BsmFI	GGGAC	2 cut(s)	463, 3608
BsmI	GAATGC	2 cut(s)	461, 2297
Bso31I	GGTCTC	1 cut(s)	1823
BsoBI	CYCGRG	2 cut(s)	212, 1623
Bsp120I	GGGCCC	1 cut(s)	3224
Bsp1286I	GDGCHC	2 cut(s)	3228, 3743
Bsp1407I	TGTACA	1 cut(s)	323
Bsp19I	CCATGG	1 cut(s)	602
BspACI	CCGC	6 cut(s)	6, 174, 199, 201, 3579, 3750
BspFNI	CGCG	2 cut(s)	201, 248
BspLI	GGNNCC	6 cut(s)	889, 1463, 2432, 2919, 3045, 3226
BspMAI	CTGCAG	3 cut(s)	519, 757, 3251
BspMI	ACCTGC	2 cut(s)	2500, 3575
BspPI	GGATC	6 cut(s)	600, 2327, 2537, 2880, 2912, 2925
BspQI	GCTCTTC	1 cut(s)	2301
BspT107I	GGYRCC	2 cut(s)	887, 2430
BspTNI	GGTCTC	1 cut(s)	1823
BsrDI	GCAATG	5 cut(s)	649, 1024, 3319, 3376, 3694
BsrFI	RCCGGY	1 cut(s)	1944
BsrGI	TGTACA	1 cut(s)	323
BsrI	ACTGG	9 cut(s)	80, 742, 853, 1566, 2050, 2067, 2583, 3025, 3494
BssAI	RCCGGY	1 cut(s)	1944
BssECI	CCNNGG	9 cut(s)	168, 177, 199, 602, 1894, 2016, 2375, 2547, 2913
BssNAI	GTATAC	1 cut(s)	1747
BssNI	GRCGYC	2 cut(s)	98, 2431
BssSI	CACGAG	1 cut(s)	3481
BssT1I	CCWWGG	6 cut(s)	177, 602, 1894, 2016, 2547, 2913
Bst1107I	GTATAC	1 cut(s)	1747
Bst2BI	CACGAG	1 cut(s)	3481
Bst2UI	CCWGG	6 cut(s)	458, 725, 1387, 2377, 2435, 3766
Bst6I	CTCTTC	7 cut(s)	624, 1681, 1702, 2093, 2301, 2914, 3419
BstACI	GRCGYC	2 cut(s)	98, 2431
BstAPI	GCANNNNNTGC	4 cut(s)	2950, 3135, 3201, 3285
BstAUI	TGTACA	1 cut(s)	323
BstBAI	YACGTR	1 cut(s)	2565
BstDSI	CCRYGG	2 cut(s)	199, 602
BstFNI	CGCG	2 cut(s)	201, 248
BstH2I	RGCGCY	3 cut(s)	296, 1951, 2434
BstHHI	GCGC	3 cut(s)	295, 1950, 2433
BstMAI	GTCTC	4 cut(s)	783, 1823, 1961, 2563
BstNI	CCWGG	6 cut(s)	458, 725, 1387, 2377, 2435, 3766
BstNSI	RCATGY	7 cut(s)	1565, 2414, 3234, 3403, 3429, 3537, 3601
BstSCI	CCNGG	8 cut(s)	26, 456, 723, 1188, 1385, 2375, 2433, 3764
BstSFI	CTRYAG	9 cut(s)	515, 753, 1012, 1138, 1273, 2538, 2724, 3162, 3247
BstSLI	GKGCMC	1 cut(s)	3228
BstSNI	TACGTA	1 cut(s)	2565
BstUI	CGCG	2 cut(s)	201, 248
BstV1I	GCAGC	7 cut(s)	529, 570, 1413, 1423, 1528, 1934, 3122
BstV2I	GAAGAC	4 cut(s)	39, 60, 2593, 2775
BstX2I	RGATCY	7 cut(s)	592, 901, 1840, 2542, 2872, 2917, 3173
BstXI	CCANNNNNNTGG	1 cut(s)	31
BstYI	RGATCY	7 cut(s)	592, 901, 1840, 2542, 2872, 2917, 3173
BstZ17I	GTATAC	1 cut(s)	1747
BsuI	GTATCC	2 cut(s)	845, 1453
BtgI	CCRYGG	2 cut(s)	199, 602
BtgZI	GCGATG	1 cut(s)	146
BtrI	CACGTC	1 cut(s)	163
BtsI	GCAGTG	2 cut(s)	259, 3256
BtsIMutI	CAGTG	6 cut(s)	259, 735, 2060, 2674, 3018, 3256
BveI	ACCTGC	2 cut(s)	2500, 3575
CaiI	CAGNNNCTG	1 cut(s)	2732
CfoI	GCGC	3 cut(s)	295, 1950, 2433
Cfr10I	RCCGGY	1 cut(s)	1944
Cfr13I	GGNCC	7 cut(s)	721, 2065, 2167, 2277, 3043, 3224, 3225
Cfr42I	CCGCGG	1 cut(s)	202
CseI	GACGC	2 cut(s)	106, 460
Csp6I	GTAC	7 cut(s)	256, 324, 668, 1075, 1569, 2566, 3328
CspCI	CAANNNNNGTGG	2 cut(s)	1314, 1349
CviQI	GTAC	7 cut(s)	256, 324, 668, 1075, 1569, 2566, 3328
DinI	GGCGCC	1 cut(s)	2432
DraI	TTTAAA	1 cut(s)	802
DraIII	CACNNNGTG	1 cut(s)	1045
DriI	GACNNNNNGTC	2 cut(s)	2173, 2862
EaeI	YGGCCR	3 cut(s)	1471, 3150, 3664
Eam1104I	CTCTTC	7 cut(s)	624, 1681, 1702, 2093, 2301, 2914, 3419
Eam1105I	GACNNNNNGTC	2 cut(s)	2173, 2862
EarI	CTCTTC	7 cut(s)	624, 1681, 1702, 2093, 2301, 2914, 3419
Eco105I	TACGTA	1 cut(s)	2565
Eco130I	CCWWGG	6 cut(s)	177, 602, 1894, 2016, 2547, 2913
Eco147I	AGGCCT	1 cut(s)	3545
Eco24I	GRGCYC	1 cut(s)	3228
Eco31I	GGTCTC	1 cut(s)	1823
Eco32I	GATATC	1 cut(s)	2421
Eco47I	GGWCC	3 cut(s)	2065, 2167, 3043
Eco47III	AGCGCT	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	1358
Eco88I	CYCGRG	2 cut(s)	212, 1623
EcoO109I	RGGNCCY	1 cut(s)	3043
EcoRI	GAATTC	1 cut(s)	3014
EcoRII	CCWGG	6 cut(s)	456, 723, 1385, 2375, 2433, 3764
EcoRV	GATATC	1 cut(s)	2421
EcoT14I	CCWWGG	6 cut(s)	177, 602, 1894, 2016, 2547, 2913
EcoT22I	ATGCAT	2 cut(s)	1024, 3628
EcoT38I	GRGCYC	1 cut(s)	3228
EgeI	GGCGCC	1 cut(s)	2432
EheI	GGCGCC	1 cut(s)	2432
ErhI	CCWWGG	6 cut(s)	177, 602, 1894, 2016, 2547, 2913
FalI	AAGNNNNNCTT	4 cut(s)	782, 814, 2256, 2288
FaqI	GGGAC	2 cut(s)	463, 3608
FauNDI	CATATG	1 cut(s)	477
FblI	GTMKAC	1 cut(s)	1746
FriOI	GRGCYC	1 cut(s)	3228
FspBI	CTAG	7 cut(s)	290, 296, 587, 905, 956, 2075, 2111
GlaI	GCGC	3 cut(s)	294, 1949, 2432
GsuI	CTGGAG	3 cut(s)	440, 3477, 3657
HaeII	RGCGCY	3 cut(s)	296, 1951, 2434
HapII	CCGG	4 cut(s)	28, 85, 1189, 1945
HgaI	GACGC	2 cut(s)	106, 460
HhaI	GCGC	3 cut(s)	295, 1950, 2433
Hin1I	GRCGYC	2 cut(s)	98, 2431
Hin6I	GCGC	3 cut(s)	293, 1948, 2431
HinP1I	GCGC	3 cut(s)	293, 1948, 2431
HincII	GTYRAC	2 cut(s)	2880, 2991
HindII	GTYRAC	2 cut(s)	2880, 2991
HindIII	AAGCTT	4 cut(s)	1181, 3092, 3439, 3644
HpaII	CCGG	4 cut(s)	28, 85, 1189, 1945
HphI	GGTGA	6 cut(s)	157, 493, 752, 1031, 2686, 2696
Hpy166II	GTNNAC	8 cut(s)	1039, 1055, 1237, 1747, 2576, 2880, 2991, 3071
Hpy8I	GTNNAC	8 cut(s)	1039, 1055, 1237, 1747, 2576, 2880, 2991, 3071
Hpy99I	CGWCG	2 cut(s)	61, 228
HpyAV	CCTTC	8 cut(s)	526, 1089, 1118, 1322, 1867, 2113, 2538, 2741
HpyCH4IV	ACGT	3 cut(s)	162, 2553, 2564
HpySE526I	ACGT	3 cut(s)	162, 2553, 2564
Hsp92I	GRCGYC	2 cut(s)	98, 2431
HspAI	GCGC	3 cut(s)	293, 1948, 2431
KasI	GGCGCC	1 cut(s)	2430
KroI	GCCGGC	1 cut(s)	1944
KroNI	GCCGGC	1 cut(s)	1946
KspI	CCGCGG	1 cut(s)	202
LguI	GCTCTTC	1 cut(s)	2301
LmnI	GCTCC	7 cut(s)	337, 459, 516, 535, 3106, 3718, 3746
Lsp1109I	GCAGC	7 cut(s)	529, 570, 1413, 1423, 1528, 1934, 3122
MaeI	CTAG	7 cut(s)	290, 296, 587, 905, 956, 2075, 2111
MaeII	ACGT	3 cut(s)	162, 2553, 2564
MfeI	CAATTG	2 cut(s)	932, 1491
MflI	RGATCY	7 cut(s)	592, 901, 1840, 2542, 2872, 2917, 3173
MhlI	GDGCHC	2 cut(s)	3228, 3743
MlsI	TGGCCA	1 cut(s)	3152
MluNI	TGGCCA	1 cut(s)	3152
Mly113I	GGCGCC	1 cut(s)	2431
MlyI	GAGTC	6 cut(s)	83, 1224, 1391, 1688, 2900, 2979
MmeI	TCCRAC	2 cut(s)	315, 3328
Mox20I	TGGCCA	1 cut(s)	3152
Mph1103I	ATGCAT	2 cut(s)	1024, 3628
MroNI	GCCGGC	1 cut(s)	1944
MroXI	GAANNNNTTC	2 cut(s)	1107, 3014
MscI	TGGCCA	1 cut(s)	3152
MseI	TTAA	2 cut(s)	801, 1049
MslI	CAYNNNNRTG	3 cut(s)	550, 738, 3602
Msp20I	TGGCCA	1 cut(s)	3152
MspA1I	CMGCKG	2 cut(s)	201, 1904
MspI	CCGG	4 cut(s)	28, 85, 1189, 1945
MspR9I	CCNGG	8 cut(s)	28, 458, 725, 1190, 1387, 2377, 2435, 3766
MunI	CAATTG	2 cut(s)	932, 1491
Mva1269I	GAATGC	2 cut(s)	461, 2297
MvaI	CCWGG	6 cut(s)	458, 725, 1387, 2377, 2435, 3766
MvnI	CGCG	2 cut(s)	201, 248
NaeI	GCCGGC	1 cut(s)	1946
NarI	GGCGCC	1 cut(s)	2431
NciI	CCSGG	2 cut(s)	28, 1190
NcoI	CCATGG	1 cut(s)	602
NdeI	CATATG	1 cut(s)	477
NgoMIV	GCCGGC	1 cut(s)	1944
NlaIV	GGNNCC	6 cut(s)	889, 1463, 2432, 2919, 3045, 3226
NmeAIII	GCCGAG	1 cut(s)	3368
NmuCI	GTSAC	6 cut(s)	14, 163, 1345, 2437, 2903, 3585
NsiI	ATGCAT	2 cut(s)	1024, 3628
NspI	RCATGY	7 cut(s)	1565, 2414, 3234, 3403, 3429, 3537, 3601
OliI	CACNNNNGTG	2 cut(s)	550, 738
PaeI	GCATGC	1 cut(s)	2414
PaeR7I	CTCGAG	1 cut(s)	212
PaqCI	CACCTGC	1 cut(s)	2500
PceI	AGGCCT	1 cut(s)	3545
PciI	ACATGT	1 cut(s)	3533
PciSI	GCTCTTC	1 cut(s)	2301
PcsI	WCGNNNNNNNCGW	1 cut(s)	2622
PctI	GAATGC	2 cut(s)	461, 2297
PdiI	GCCGGC	1 cut(s)	1946
PdmI	GAANNNNTTC	2 cut(s)	1107, 3014
PflFI	GACNNNGTC	1 cut(s)	2555
PflMI	CCANNNNNTGG	1 cut(s)	478
PleI	GAGTC	6 cut(s)	82, 1223, 1390, 1688, 2900, 2978
PluTI	GGCGCC	1 cut(s)	2434
PpsI	GAGTC	6 cut(s)	82, 1223, 1390, 1688, 2900, 2978
Ppu21I	YACGTR	1 cut(s)	2565
PpuMI	RGGWCCY	1 cut(s)	3043
PscI	ACATGT	1 cut(s)	3533
PsiI	TTATAA	1 cut(s)	1262
Psp5II	RGGWCCY	1 cut(s)	3043
Psp6I	CCWGG	6 cut(s)	456, 723, 1385, 2375, 2433, 3764
PspGI	CCWGG	6 cut(s)	456, 723, 1385, 2375, 2433, 3764
PspN4I	GGNNCC	6 cut(s)	889, 1463, 2432, 2919, 3045, 3226
PspOMI	GGGCCC	1 cut(s)	3224
PspPI	GGNCC	7 cut(s)	721, 2065, 2167, 2277, 3043, 3224, 3225
PspPPI	RGGWCCY	1 cut(s)	3043
PsrI	GAACNNNNNNTAC	2 cut(s)	1561, 1593
PstI	CTGCAG	3 cut(s)	519, 757, 3251
PstNI	CAGNNNCTG	1 cut(s)	2732
PsuI	RGATCY	7 cut(s)	592, 901, 1840, 2542, 2872, 2917, 3173
PsyI	GACNNNGTC	1 cut(s)	2555
PvuII	CAGCTG	1 cut(s)	1904
RsaI	GTAC	7 cut(s)	257, 325, 669, 1076, 1570, 2567, 3329
RsaNI	GTAC	7 cut(s)	256, 324, 668, 1075, 1569, 2566, 3328
RseI	CAYNNNNRTG	3 cut(s)	550, 738, 3602
SacII	CCGCGG	1 cut(s)	202
SapI	GCTCTTC	1 cut(s)	2301
SaqAI	TTAA	2 cut(s)	801, 1049
Sau96I	GGNCC	7 cut(s)	721, 2065, 2167, 2277, 3043, 3224, 3225
ScaI	AGTACT	1 cut(s)	1570
SchI	GAGTC	6 cut(s)	83, 1224, 1391, 1688, 2900, 2979
ScrFI	CCNGG	8 cut(s)	28, 458, 725, 1190, 1387, 2377, 2435, 3766
SduI	GDGCHC	2 cut(s)	3228, 3743
SfcI	CTRYAG	9 cut(s)	515, 753, 1012, 1138, 1273, 2538, 2724, 3162, 3247
SfoI	GGCGCC	1 cut(s)	2432
Sfr274I	CTCGAG	1 cut(s)	212
Sfr303I	CCGCGG	1 cut(s)	202
SgrBI	CCGCGG	1 cut(s)	202
SinI	GGWCC	3 cut(s)	2065, 2167, 3043
SlaI	CTCGAG	1 cut(s)	212
SmiMI	CAYNNNNRTG	3 cut(s)	550, 738, 3602
SmlI	CTYRAG	4 cut(s)	212, 239, 773, 1723
SmoI	CTYRAG	4 cut(s)	212, 239, 773, 1723
SnaBI	TACGTA	1 cut(s)	2565
SphI	GCATGC	1 cut(s)	2414
SseBI	AGGCCT	1 cut(s)	3545
SsiI	CCGC	6 cut(s)	6, 174, 199, 201, 3579, 3750
SspDI	GGCGCC	1 cut(s)	2430
SspI	AATATT	2 cut(s)	1524, 2358
SspMI	CTAG	7 cut(s)	290, 296, 587, 905, 956, 2075, 2111
StuI	AGGCCT	1 cut(s)	3545
StyD4I	CCNGG	8 cut(s)	26, 456, 723, 1188, 1385, 2375, 2433, 3764
StyI	CCWWGG	6 cut(s)	177, 602, 1894, 2016, 2547, 2913
TaiI	ACGT	3 cut(s)	165, 2556, 2567
TaqI	TCGA	5 cut(s)	213, 730, 2616, 2803, 2957
TatI	WGTACW	2 cut(s)	323, 1568
TauI	GCSGC	5 cut(s)	9, 176, 201, 204, 3582
Tru1I	TTAA	2 cut(s)	801, 1049
Tru9I	TTAA	2 cut(s)	801, 1049
TscAI	CASTG	6 cut(s)	266, 742, 2067, 2674, 3025, 3256
TseFI	GTSAC	6 cut(s)	14, 163, 1345, 2437, 2903, 3585
TseI	GCWGC	7 cut(s)	517, 583, 1401, 1411, 1516, 1922, 3135
Tsp45I	GTSAC	6 cut(s)	14, 163, 1345, 2437, 2903, 3585
TspGWI	ACGGA	2 cut(s)	1454, 2849
TspRI	CASTG	6 cut(s)	266, 742, 2067, 2674, 3025, 3256
Tth111I	GACNNNGTC	1 cut(s)	2555
Van91I	CCANNNNNTGG	1 cut(s)	478
VpaK11BI	GGWCC	3 cut(s)	2065, 2167, 3043
XbaI	TCTAGA	3 cut(s)	904, 955, 2110
XceI	RCATGY	7 cut(s)	1565, 2414, 3234, 3403, 3429, 3537, 3601
XcmI	CCANNNNNNNNNTGG	1 cut(s)	845
XhoI	CTCGAG	1 cut(s)	212
XmiI	GTMKAC	1 cut(s)	1746
XmnI	GAANNNNTTC	2 cut(s)	1107, 3014
XspI	CTAG	7 cut(s)	290, 296, 587, 905, 956, 2075, 2111
ZrmI	AGTACT	1 cut(s)	1570
Zsp2I	ATGCAT	2 cut(s)	1024, 3628

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.