Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0008770

Physical Location & Seq

Genomic Coordinates Reverse (-)

37278848 .. 37282923

Gene Structure 4076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00244490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGAAAAAGTTACTCAAGTCTCATTCCCCTAAGAGGTTCTTTAAAGAAAATTGGAGTTGCATGAAGAAAGACGACATCCAAACCGATACCGGATACAGTCCTGTTGATGGGCTTCATCTTTGGCATGGTGCCATAAGGAAAGATCTAGAAAAAATTATGGGAGAGCTTTATCAATTGAGACGCTCAGTCAATTTTCTAGATATTGATTCAATAGTTGTCCAGCTAAAGTTTCTTGTTGATGTCCTTACTTTCTACAGCAATGCATTGGAGAAGTTAGTTCACCCTGTGTTACGTGAACTTGTCAATGGCTGTCTGTACCCTTCTATTGAGAAATTTCCCAATGAAAGCCTTCTGGAAAGTTTGCAGAATTTACTATACTATAGCCTTGAAAATGGAACACCTTTGGGCAAATTTGTTGAAAAGCTTTGCCGGGAATTTGAGTGTCTTGTGGTGGGAGTCCGCAAGCATTTTGCTGTCCACGAAACAGAGAAGAGATTTAATCTTCCGGATGGAAGAGAAGATAGGGAAGAGAAGGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010106 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019725 GO:0019787 GO:0019941 GO:0030003 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033554 GO:0036211 GO:0042592 GO:0042594 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051603 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

179

Amino Acids

20.98

Weight (kDa)

6.6

Isoelectric Point (pI)

42.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18910 AT1G74770 AT1G74770
fragaria_vesca	FvH4_5g15780 FvH4_5g15780 FvH4_5g15780
malus_domestica	MD14G1191800.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.5G184400_v2.0.a1 Prupe.5G184400_v2.0.a1
pyrus_communis	pycom14g15950
rosa_chinensis	RchiOBHm_Chr7g0180341
rosa_laevigata	RLG00000005275
rosa_multiflora	Rmu_sc0003526.1_g000012 Rmu_ssc0000099.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244490 Rroxscaffold_3G00272970
rosa_rugosa	Rorug06G0432400
rosa_samantha	Rh7AG032800 Rh7BG032800 Rh7CG034700 Rh7DG033400
rosa_wichuraiana	Rw7G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	128
AccIII	TCCGGA	1 cut(s)	505
AciI	CCGC	1 cut(s)	460
AcsI	RAATTY	4 cut(s)	332, 367, 410, 434
AdeI	CACNNNGTG	1 cut(s)	286
AfaI	GTAC	1 cut(s)	317
AfiI	CCNNNNNNNGG	2 cut(s)	33, 107
AgsI	TTSAA	3 cut(s)	210, 389, 419
AhdI	GACNNNNNGTC	1 cut(s)	185
AluBI	AGCT	3 cut(s)	166, 223, 424
AluI	AGCT	3 cut(s)	166, 223, 424
Alw26I	GTCTC	2 cut(s)	24, 172
Aor13HI	TCCGGA	1 cut(s)	505
ApoI	RAATTY	4 cut(s)	332, 367, 410, 434
Asp700I	GAANNNNTTC	1 cut(s)	348
AsuC2I	CCSGG	1 cut(s)	431
AsuHPI	GGTGA	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	128
BccI	CCATC	2 cut(s)	101, 503
BciVI	GTATCC	1 cut(s)	86
BcnI	CCSGG	1 cut(s)	431
BcoDI	GTCTC	2 cut(s)	24, 172
BfaI	CTAG	2 cut(s)	146, 197
BfmI	CTRYAG	2 cut(s)	253, 379
BfuI	GTATCC	1 cut(s)	86
BglII	AGATCT	1 cut(s)	142
Bme1390I	CCNGG	1 cut(s)	431
BmeRI	GACNNNNNGTC	1 cut(s)	185
BmiI	GGNNCC	1 cut(s)	130
BmrFI	CCNGG	1 cut(s)	431
BpuMI	CCSGG	1 cut(s)	431
BsaAI	YACGTR	1 cut(s)	293
BsaWI	WCCGGW	2 cut(s)	89, 505
Bsc4I	CCNNNNNNNGG	2 cut(s)	33, 107
Bse3DI	GCAATG	1 cut(s)	265
BseAI	TCCGGA	1 cut(s)	505
BseGI	GGATG	2 cut(s)	75, 514
BseLI	CCNNNNNNNGG	2 cut(s)	33, 107
BseMI	GCAATG	1 cut(s)	265
BseMII	CTCAG	1 cut(s)	198
BshNI	GGYRCC	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	90, 430, 506
BslI	CCNNNNNNNGG	2 cut(s)	33, 107
BsmAI	GTCTC	2 cut(s)	24, 172
BsmBI	CGTCTC	1 cut(s)	172
Bsp13I	TCCGGA	1 cut(s)	505
Bsp143I	GATC	1 cut(s)	142
BspACI	CCGC	1 cut(s)	460
BspCNI	CTCAG	1 cut(s)	197
BspEI	TCCGGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	130
BspT107I	GGYRCC	1 cut(s)	128
BsrDI	GCAATG	1 cut(s)	265
BssMI	GATC	1 cut(s)	142
Bst4CI	ACNGT	1 cut(s)	98
Bst6I	CTCTTC	3 cut(s)	485, 508, 522
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	1 cut(s)	464
BstDEI	CTNAG	2 cut(s)	30, 184
BstF5I	GGATG	2 cut(s)	75, 514
BstKTI	GATC	1 cut(s)	145
BstMAI	GTCTC	2 cut(s)	24, 172
BstMBI	GATC	1 cut(s)	142
BstSCI	CCNGG	1 cut(s)	429
BstSFI	CTRYAG	2 cut(s)	253, 379
BstX2I	RGATCY	1 cut(s)	142
BstYI	RGATCY	1 cut(s)	142
BsuI	GTATCC	1 cut(s)	86
BtsCI	GGATG	2 cut(s)	75, 514
Cac8I	GCNNGC	1 cut(s)	464
CseI	GACGC	1 cut(s)	189
Csp6I	GTAC	1 cut(s)	316
CviAII	CATG	2 cut(s)	61, 125
CviJI	RGCY	7 cut(s)	112, 166, 223, 309, 348, 384, 424
CviKI_1	RGCY	7 cut(s)	112, 166, 223, 309, 348, 384, 424
CviQI	GTAC	1 cut(s)	316
DdeI	CTNAG	2 cut(s)	30, 184
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
DraI	TTTAAA	1 cut(s)	43
DraIII	CACNNNGTG	1 cut(s)	286
DriI	GACNNNNNGTC	1 cut(s)	185
Eam1104I	CTCTTC	3 cut(s)	485, 508, 522
Eam1105I	GACNNNNNGTC	1 cut(s)	185
EarI	CTCTTC	3 cut(s)	485, 508, 522
EcoT22I	ATGCAT	1 cut(s)	265
Esp3I	CGTCTC	1 cut(s)	172
FaeI	CATG	2 cut(s)	64, 128
FaiI	YATR	6 cut(s)	62, 126, 134, 158, 376, 381
FalI	AAGNNNNNCTT	2 cut(s)	23, 55
FatI	CATG	2 cut(s)	60, 124
FokI	GGATG	2 cut(s)	62, 521
FspBI	CTAG	2 cut(s)	146, 197
HapII	CCGG	3 cut(s)	90, 430, 506
HgaI	GACGC	1 cut(s)	189
Hin1II	CATG	2 cut(s)	64, 128
HindIII	AAGCTT	1 cut(s)	422
HinfI	GANTC	2 cut(s)	206, 456
HpaII	CCGG	3 cut(s)	90, 430, 506
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	3 cut(s)	280, 296, 478
Hpy188III	TCNNGA	4 cut(s)	146, 197, 353, 506
Hpy8I	GTNNAC	3 cut(s)	280, 296, 478
HpyAV	CCTTC	3 cut(s)	330, 359, 526
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	3 cut(s)	60, 263, 364
HpyF3I	CTNAG	2 cut(s)	30, 184
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	2 cut(s)	64, 128
Kpn2I	TCCGGA	1 cut(s)	505
Kzo9I	GATC	1 cut(s)	142
LpnPI	CCDG	7 cut(s)	103, 114, 233, 297, 338, 443, 519
MaeI	CTAG	2 cut(s)	146, 197
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	2 cut(s)	9, 288
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	6 cut(s)	76, 494, 502, 525, 530, 539
MfeI	CAATTG	1 cut(s)	173
MflI	RGATCY	1 cut(s)	142
MluCI	AATT	8 cut(s)	49, 153, 173, 190, 332, 367, 410, 434
MlyI	GAGTC	1 cut(s)	465
MnlI	CCTC	1 cut(s)	27
Mph1103I	ATGCAT	1 cut(s)	265
MroI	TCCGGA	1 cut(s)	505
MroXI	GAANNNNTTC	1 cut(s)	348
MseI	TTAA	2 cut(s)	42, 498
MspI	CCGG	3 cut(s)	90, 430, 506
MspR9I	CCNGG	1 cut(s)	431
MunI	CAATTG	1 cut(s)	173
NciI	CCSGG	1 cut(s)	431
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	64, 128
NlaIV	GGNNCC	1 cut(s)	130
NsiI	ATGCAT	1 cut(s)	265
PdmI	GAANNNNTTC	1 cut(s)	348
PfeI	GAWTC	1 cut(s)	206
PleI	GAGTC	1 cut(s)	464
PpsI	GAGTC	1 cut(s)	464
Ppu21I	YACGTR	1 cut(s)	293
PspN4I	GGNNCC	1 cut(s)	130
PsuI	RGATCY	1 cut(s)	142
RsaI	GTAC	1 cut(s)	317
RsaNI	GTAC	1 cut(s)	316
SaqAI	TTAA	2 cut(s)	42, 498
Sau3AI	GATC	1 cut(s)	142
SchI	GAGTC	1 cut(s)	465
ScrFI	CCNGG	1 cut(s)	431
SetI	ASST	6 cut(s)	38, 168, 225, 295, 403, 426
SfcI	CTRYAG	2 cut(s)	253, 379
SmlI	CTYRAG	1 cut(s)	14
SmoI	CTYRAG	1 cut(s)	14
Sse9I	AATT	8 cut(s)	49, 153, 173, 190, 332, 367, 410, 434
SsiI	CCGC	1 cut(s)	460
SspMI	CTAG	2 cut(s)	146, 197
StyD4I	CCNGG	1 cut(s)	429
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	295
TasI	AATT	8 cut(s)	49, 153, 173, 190, 332, 367, 410, 434
TfiI	GAWTC	1 cut(s)	206
Tru1I	TTAA	2 cut(s)	42, 498
Tru9I	TTAA	2 cut(s)	42, 498
TspDTI	ATGAA	4 cut(s)	17, 77, 104, 357
XapI	RAATTY	4 cut(s)	332, 367, 410, 434
XbaI	TCTAGA	2 cut(s)	145, 196
XmnI	GAANNNNTTC	1 cut(s)	348
XspI	CTAG	2 cut(s)	146, 197
Zsp2I	ATGCAT	1 cut(s)	265

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.