Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0008770

Physical Location & Seq

Genomic Coordinates Forward (+)

2167775 .. 2176855

Gene Structure 9081 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG032800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3774 bp

ATGGGCGGAGACCGTCACGACACCACCCGGCCGGACTGTTCTTCGTCTTCTTCTTCTTCTTCCTCCGAGTCGCAGCGAGTCCGGCTCTCTCAGACGCCGATTCTGTTGCTGGTTTGTTTCCATAAGGCGATGCGAGCCGAGCTCGCCGATCTCCGCCACGTCACCGAGGCCGCCTTGGACGGTGGATTCAGAGGCCGCGGCTTTGTTCTCGAGGTTATGCGACGGTTTGAATTCCTCAAGCTCGCGTATAAGTACCACTGCTCTGCTGAGGATGAGGTTATTTTTCTTGCGCTAGATGGACGAACAAAAAACATAGCTTGTACATATTCATTGGAGCATAGGAGTATAGATGGTCTTTTTGAATCTATTTTTAGTCGTTTGGATGTATTGTTAGAGGAAAGTAAAGATATTTCAAAGGAATTTCAGGAACTTGTGTTCTGCATCGGGACGCTCCAGGCATTCATTTGCCAGCATATGGTGAAAGAAGAAGAACAGGTTTTTCCTTTGCTCCTGCAGCAATTCTCTGTGAAGGAGCAGGCTTCACTTGTGTGGCAGTTCATGTGTAGTATGCCTTTAGTGCTGCTAGAGGATCTTCTACCATGGATGATCTCCTCTCTTCAAACTGATGAAAAAGAGGAAGTCATACATTGCATAAAAGAAATTGTACCTGATGAAAAATATCTCCAAGAGGTAGTAAGCTCGTGGCTTGCTAACAAGGGCCAAGCTCGACACACTGGTGATGATGAATCTGCAGATATGAAAAAGTTACTCAAGTCTCATTCCCCTAAGAGGTTCTTTGAAGAAAATTGGAATTGCATGAAGAAAGACAGCATCCAAACTGATACTGGATACAGTCCTGTTGATGGGCTTCATCTTTGGCATGGTGCCATAAGGAAAGATCTAGAAAAAATTATGGGAGAGCTTTATCAATTGAGAAGCTCAGTCAATTTTCTAGATATTGATTCAATAGTTGTCCAGCTAAAGTTTCTTGCTGATGTCCTTACTTTCTACAGCAATGCATTGGAGAAGTTAGTTCACCCTGTGTTAAATGAACTTGTCAATGGCTGTCTGTACCCTTCTATTGAGAAATTTCCCAATGAAAGCCTTCTGGAAAGTTTGCAGAATTTACTATACTATAGCCTTGAAAATGGAACACCTTTGGGCAAATTTGTTGAAAAGCTTTGCCGTGAATTTGAGTGTCTTGTGGTGGGAGTCCGCAAGCATTTTGCTGTCCACGAAACAGAGGTATTTCCCATTATAAGGAAGAACTGTAGCCATGAAATGCAACAGCAACTCGTGTATGTCAGCCTTCATATTATGCCACTTGGGTTGCTGAAGTGTGTGACTACTTGGTTTTCAGCTTGCTTATCTGAGAATGAGTCCAGGTCAATTCTTAGCAGCATGAAGCAGCGAGATTTCTTAGTCAATGAATCTTTTGTATCCCTGTTACATGAGTGGTTCCGTATTGGCCATTCAGGTAAAACCTCAATTGAAAATTTCCGAGAGGACTTGCAGCAAATATTCAAGAGCAGATGCACTTTCTTATGCAACCAATTACATGCCAGTACTGCGTGTTCATCTGTAAGCTCCAATATGCAACATCAAGGGAAATCAAACACTGGGGTAATGGAACTAATTTCTTCAAACAAGGGAAAGAACTCTATGCCATACTCTTCATCTTTTGCCCCCGACTCTTTTAAGTATTCTGAGATGACAAACTCAAGAGGAATCAATCTCCAAGTATACTTCTCTGGAATGAAAACATCATATCATATTCCTGAAAGTCTTAGTGGAGAAAATTTGAGTGGTTACGGTCTCCATGAACCAAAACCAATAGATCTCATATTTTTCTTCCACAAGGCTCTCAGGAAGGATTTGGATTACCTTGTCCTTGGTTCAGCTGAGTTGGCTGAAAATGCAGCTTCCCTCACAGATTTTTGCCGGCGCTTTAGTCTCATACAGTTCTTACATCAAATACATAGTGAAGCAGAGGACGAGGTTGCCTTTCCAGCCTTGGAGGCAAAGGGAACATGTCAAAACATTAGCCAGTCTTACACACTGGACCACAAACTAGAGGTTGAACTCTTCCAAAAAATATCCTTCATTCTAGATGAGATGTCTAAATTGCATTTTTCAGTTTCTATGGTTGATTCAAACACAATGGACCAGATGTCGCCAAAGCACTATCAGTTGTGCATGAGGCTTCATGGTATTTGCAAATCTATGAGCAAATTACTGACTGACCATATTCATCGCGAAGAAGTTGAACTTTGGCCCTTGTTTAAAGAATGCTTCTCCATTGAAGAGCAAGAAAGGATCGTGGGGTGCATACTTGGTAGAACAGAAGCGAAAATATTACAAGATATGATACCCTGGCTGATGGAATCTTTGACACCAGAAGAACAGCATGCCATGATATCTATATGGCGCCAGGTCACAAGAAACACAATGTTTGATGAGTGGTTGAAAGAATGGTGGGAGGGGTATGATGCAGGCAAGGTGGTGCAGGAGTCAAGTCTTCCTCCTTCAAAGACTGTAGATCCCTTGGACGTTGTCTCTACGTACTTGTGTGGACTGGATGAACAAGAAAGAAGTGTCTTCAACAGAAGCATCGACTTTCCCGAAAAAGATTCCCCTGATACTAATACTAAGCCATTACGAATCAGTGAGGTGAATCATAAGCTGAGGGATGCTGATAATAACCAATGTAATTACAACTCTACAGAATCTGGAAGTCTTGCAGAAGGTAAGAAGATGAAGTATGAAGACATTGAAAATGCAATAGATCAAATCAATGATCCAGGACAACTGTTTCAAGCAAGTCAGAAAACGGATTATTGTAAGTGCCTGCTGACACTAAGTCAAGAGGATCTGTTGACTGCAATAAGTAAAATCTCCCGCGACTCTTCCTTGGATCCTCAGAAGAAACCATATATGATGCAGAGCCTGCTATCGAGCCATTGGAGAGTCAGACAACACTCTCAGTTAACTGTTGCAAGTAATGGGAAGGAATTCCCTGGTCAGCATCCATCCTATCAGGACCCTTTTGGGCTAACATTTGGTTGTAAACACTATAAGAGGAACTGTAAGCTTGTTGCTCCATGTTGCAACCAGCTCTACACTTGCATACGCTGCCATGATGAGATGGCCGATCACACTATAGATAGGAGATCTGTAACAAAGATGATGTGCATGAAATGCTTGAAAATTCAGCCAATCAGGCCCACATGCTCAACTGCATCCTGCAGTGATTTATCTATGGCAAGATACTTTTGCAAAATCTGCAAAATTTTTGATGATGAAAGGATGATCTACCATTGCCCGTACTGTAACTTGTGCCGAGTTGGAAAGGGTTTGGGTATTGACTATTTCCATTGCATGACTTGTAATGCTTGCATGTCCTGTTCTCTCTTCAAGCATACATGCAGAGAGAAAAGCTTTATGGATAATTGCCCTATTTGCCATGAGGACATCTTCACGAGCAACTCTCCAGTAAAAGCCCTTCCATGTGGTCATTCAATGCACTCAACATGTTTTCAGGCCTACACCTTTACTAATTATACCTGCCCAATCTGCGGCAAGTCACTTGGGGACATGCAGATGTTATTTAGAATGTATGATGCATATTTGGCTGGAGAGAAGCTTCCAGATGAGTATTCTGGCCGAACTCAGGCCATACTATGCAATGACTGTGAGAAGAAAGGAACTGCTCCCTTTCATTGGCTTTACCACAAGTGCTCCTCTTGTGGTTCATACAATACCAGGCTTCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006464 GO:0006508 GO:0006511 GO:0006807 GO:0006873 GO:0006875 GO:0006879 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008270 GO:0009056 GO:0009057 GO:0009267 GO:0009605 GO:0009987 GO:0009991 GO:0010106 GO:0010498 GO:0016567 GO:0016740 GO:0019538 GO:0019725 GO:0019787 GO:0019941 GO:0030003 GO:0030163 GO:0031667 GO:0031668 GO:0031669 GO:0032446 GO:0033554 GO:0036211 GO:0042592 GO:0042594 GO:0043161 GO:0043167 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0050896 GO:0051603 GO:0051716 GO:0055065 GO:0055072 GO:0055076 GO:0055080 GO:0055082 GO:0061630 GO:0061659 GO:0065007 GO:0065008 GO:0070647 GO:0071496 GO:0071704 GO:0098771 GO:0140096 GO:1901564 GO:1901565 GO:1901575

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hemerythrin zf-CHY zf-RING_2 zinc_ribbon_6

Protein Analysis

1257

Amino Acids

144.0

Weight (kDa)

5.97

Isoelectric Point (pI)

48.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hemerythrin	PF01814	39 - 170	3.1e-08	Hemerythrin HHE cation binding domain
zf-CHY	PF05495	1022 - 1090	8.5e-18	CHY zinc finger
zf-RING_2	PF13639	1149 - 1192	3.7e-09	Ring finger domain
zinc_ribbon_6	PF14599	1198 - 1255	1.3e-22	Zinc-ribbon

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008770)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G18910 AT1G74770 AT1G74770
fragaria_vesca	FvH4_5g15780 FvH4_5g15780 FvH4_5g15780
malus_domestica	MD14G1191800.v1.1
prunus_persica	Prupe.1G314300_v2.0.a1 Prupe.5G184400_v2.0.a1 Prupe.5G184400_v2.0.a1
pyrus_communis	pycom14g15950
rosa_chinensis	RchiOBHm_Chr7g0180341
rosa_laevigata	RLG00000005275
rosa_multiflora	Rmu_sc0003526.1_g000012 Rmu_ssc0000099.1_g000006
rosa_roxburghii	Rroxscaffold_3G00244490 Rroxscaffold_3G00272970
rosa_rugosa	Rorug06G0432400
rosa_samantha	Rh7AG032800 Rh7BG032800 Rh7CG034700 Rh7DG033400
rosa_wichuraiana	Rw7G002740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1259
Acc36I	ACCTGC	1 cut(s)	3572
AccB1I	GGYRCC	2 cut(s)	884, 2427
AccB7I	CCANNNNNTGG	1 cut(s)	475
AccI	GTMKAC	1 cut(s)	1743
AccII	CGCG	4 cut(s)	198, 245, 2256, 2901
AciI	CCGC	8 cut(s)	6, 154, 171, 196, 198, 1216, 2899, 3576
AclWI	GGATC	7 cut(s)	597, 2324, 2534, 2792, 2877, 2909, 2922
AcoI	YGGCCR	4 cut(s)	29, 1468, 3147, 3661
AcuI	CTGAAG	1 cut(s)	1355
AcyI	GRCGYC	2 cut(s)	95, 2428
AdeI	CACNNNGTG	1 cut(s)	1042
AfaI	GTAC	7 cut(s)	254, 322, 666, 1073, 1567, 2564, 3326
AfiI	CCNNNNNNNGG	7 cut(s)	475, 789, 863, 1260, 3575, 3670, 3720
AflIII	ACRYGT	2 cut(s)	2030, 3530
AhdI	GACNNNNNGTC	2 cut(s)	2170, 2859
AjiI	CACGTC	1 cut(s)	160
AjnI	CCWGG	7 cut(s)	453, 1382, 2372, 2430, 2800, 3016, 3761
AleI	CACNNNNGTG	2 cut(s)	547, 735
AloI	GAACNNNNNNTCC	2 cut(s)	419, 451
Alw21I	GWGCWC	2 cut(s)	144, 3740
Alw26I	GTCTC	5 cut(s)	3, 780, 1820, 1958, 2560
AlwI	GGATC	7 cut(s)	597, 2324, 2534, 2792, 2877, 2909, 2922
AlwNI	CAGNNNCTG	2 cut(s)	2729, 2947
Ama87I	CYCGRG	1 cut(s)	209
ApeKI	GCWGC	8 cut(s)	73, 514, 580, 1398, 1408, 1513, 1919, 3132
Asp700I	GAANNNNTTC	2 cut(s)	1104, 3011
AspLEI	GCGC	3 cut(s)	292, 1947, 2430
AspS9I	GGNCC	6 cut(s)	718, 2062, 2164, 2274, 3040, 3222
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	5 cut(s)	154, 490, 749, 1028, 2683
AvaI	CYCGRG	1 cut(s)	209
AvaII	GGWCC	3 cut(s)	2062, 2164, 3040
BalI	TGGCCA	1 cut(s)	1470
BamHI	GGATCC	1 cut(s)	2914
BanI	GGYRCC	2 cut(s)	884, 2427
BanII	GRGCYC	1 cut(s)	144
BarI	GAAGNNNNNNTAC	2 cut(s)	3486, 3518
BauI	CACGAG	3 cut(s)	700, 1295, 3478
BbsI	GAAGAC	4 cut(s)	39, 2510, 2590, 2772
Bbv12I	GWGCWC	2 cut(s)	144, 3740
BbvCI	CCTCAGC	2 cut(s)	267, 2684
BbvI	GCAGC	8 cut(s)	85, 526, 567, 1410, 1420, 1525, 1931, 3119
BccI	CCATC	6 cut(s)	290, 344, 857, 2374, 3037, 3139
BceAI	ACGGC	1 cut(s)	1170
BcgI	CGANNNNNNTGC	2 cut(s)	88, 122
BciT130I	CCWGG	7 cut(s)	455, 1384, 2374, 2432, 2802, 3018, 3763
BciVI	GTATCC	2 cut(s)	842, 1450
BcnI	CCSGG	1 cut(s)	28
BcoDI	GTCTC	5 cut(s)	3, 780, 1820, 1958, 2560
BfaI	CTAG	6 cut(s)	293, 584, 902, 953, 2072, 2108
BfmI	CTRYAG	9 cut(s)	512, 750, 1009, 1135, 1270, 2535, 2721, 3159, 3244
BfoI	RGCGCY	2 cut(s)	1948, 2431
BfuAI	ACCTGC	1 cut(s)	3572
BfuI	GTATCC	2 cut(s)	842, 1450
BglI	GCCNNNNNGGC	2 cut(s)	2018, 3220
BglII	AGATCT	3 cut(s)	898, 1837, 3170
BmcAI	AGTACT	1 cut(s)	1567
Bme1390I	CCNGG	8 cut(s)	28, 455, 1384, 2374, 2432, 2802, 3018, 3763
Bme18I	GGWCC	3 cut(s)	2062, 2164, 3040
BmeRI	GACNNNNNGTC	2 cut(s)	2170, 2859
BmeT110I	CYCGRG	1 cut(s)	209
BmgBI	CACGTC	1 cut(s)	160
BmgT120I	GGNCC	6 cut(s)	718, 2062, 2164, 2274, 3040, 3222
BmiI	GGNNCC	5 cut(s)	886, 1460, 2429, 2916, 3042
BmrFI	CCNGG	8 cut(s)	28, 455, 1384, 2374, 2432, 2802, 3018, 3763
BmrI	ACTGGG	1 cut(s)	1629
BmuI	ACTGGG	1 cut(s)	1629
BpiI	GAAGAC	4 cut(s)	39, 2510, 2590, 2772
BplI	GAGNNNNNCTC	6 cut(s)	69, 101, 126, 158, 3472, 3504
BpmI	CTGGAG	3 cut(s)	437, 3474, 3654
Bpu10I	CCTNAGC	2 cut(s)	267, 2684
BpuEI	CTTGAG	3 cut(s)	221, 755, 1705
BpuMI	CCSGG	1 cut(s)	28
BsaAI	YACGTR	1 cut(s)	2562
BsaHI	GRCGYC	2 cut(s)	95, 2428
BsaI	GGTCTC	2 cut(s)	3, 1820
BsaXI	ACNNNNNCTCC	2 cut(s)	3722, 3752
Bsc4I	CCNNNNNNNGG	7 cut(s)	475, 789, 863, 1260, 3575, 3670, 3720
Bse118I	RCCGGY	1 cut(s)	1941
Bse1I	ACTGG	8 cut(s)	739, 850, 1563, 1624, 2047, 2064, 2580, 3491
Bse3DI	GCAATG	5 cut(s)	646, 1021, 3316, 3373, 3691
BseBI	CCWGG	7 cut(s)	455, 1384, 2374, 2432, 2802, 3018, 3763
BseLI	CCNNNNNNNGG	7 cut(s)	475, 789, 863, 1260, 3575, 3670, 3720
BseMI	GCAATG	5 cut(s)	646, 1021, 3316, 3373, 3691
BseNI	ACTGG	8 cut(s)	739, 850, 1563, 1624, 2047, 2064, 2580, 3491
BseRI	GAGGAG	2 cut(s)	601, 3730
BseX3I	CGGCCG	1 cut(s)	29
BseXI	GCAGC	8 cut(s)	85, 526, 567, 1410, 1420, 1525, 1931, 3119
BsgI	GTGCAG	1 cut(s)	2525
Bsh1236I	CGCG	4 cut(s)	198, 245, 2256, 2901
Bsh1285I	CGRYCG	1 cut(s)	32
BshNI	GGYRCC	2 cut(s)	884, 2427
BsiEI	CGRYCG	1 cut(s)	32
BsiHKAI	GWGCWC	2 cut(s)	144, 3740
BsiHKCI	CYCGRG	1 cut(s)	209
BsiSI	CCGG	4 cut(s)	28, 32, 82, 1942
BslFI	GGGAC	2 cut(s)	460, 3605
BslI	CCNNNNNNNGG	7 cut(s)	475, 789, 863, 1260, 3575, 3670, 3720
BsmAI	GTCTC	5 cut(s)	3, 780, 1820, 1958, 2560
BsmFI	GGGAC	2 cut(s)	460, 3605
BsmI	GAATGC	2 cut(s)	458, 2294
Bso31I	GGTCTC	2 cut(s)	3, 1820
BsoBI	CYCGRG	1 cut(s)	209
Bsp1286I	GDGCHC	2 cut(s)	144, 3740
Bsp1407I	TGTACA	1 cut(s)	320
Bsp19I	CCATGG	1 cut(s)	599
Bsp68I	TCGCGA	1 cut(s)	2256
BspACI	CCGC	8 cut(s)	6, 154, 171, 196, 198, 1216, 2899, 3576
BspFNI	CGCG	4 cut(s)	198, 245, 2256, 2901
BspLI	GGNNCC	5 cut(s)	886, 1460, 2429, 2916, 3042
BspMAI	CTGCAG	3 cut(s)	516, 754, 3248
BspMI	ACCTGC	1 cut(s)	3572
BspPI	GGATC	7 cut(s)	597, 2324, 2534, 2792, 2877, 2909, 2922
BspQI	GCTCTTC	1 cut(s)	2298
BspT107I	GGYRCC	2 cut(s)	884, 2427
BspTNI	GGTCTC	2 cut(s)	3, 1820
BsrDI	GCAATG	5 cut(s)	646, 1021, 3316, 3373, 3691
BsrFI	RCCGGY	1 cut(s)	1941
BsrGI	TGTACA	1 cut(s)	320
BsrI	ACTGG	8 cut(s)	739, 850, 1563, 1624, 2047, 2064, 2580, 3491
BssAI	RCCGGY	1 cut(s)	1941
BssNAI	GTATAC	1 cut(s)	1744
BssNI	GRCGYC	2 cut(s)	95, 2428
BssSI	CACGAG	3 cut(s)	700, 1295, 3478
BssT1I	CCWWGG	6 cut(s)	174, 599, 1891, 2013, 2544, 2910
Bst1107I	GTATAC	1 cut(s)	1744
Bst2BI	CACGAG	3 cut(s)	700, 1295, 3478
Bst2UI	CCWGG	7 cut(s)	455, 1384, 2374, 2432, 2802, 3018, 3763
Bst6I	CTCTTC	6 cut(s)	621, 1678, 2090, 2298, 2911, 3416
BstACI	GRCGYC	2 cut(s)	95, 2428
BstAPI	GCANNNNNTGC	4 cut(s)	2947, 3132, 3198, 3282
BstAUI	TGTACA	1 cut(s)	320
BstBAI	YACGTR	1 cut(s)	2562
BstDSI	CCRYGG	2 cut(s)	196, 599
BstFNI	CGCG	4 cut(s)	198, 245, 2256, 2901
BstH2I	RGCGCY	2 cut(s)	1948, 2431
BstHHI	GCGC	3 cut(s)	292, 1947, 2430
BstMAI	GTCTC	5 cut(s)	3, 780, 1820, 1958, 2560
BstMCI	CGRYCG	1 cut(s)	32
BstNI	CCWGG	7 cut(s)	455, 1384, 2374, 2432, 2802, 3018, 3763
BstNSI	RCATGY	8 cut(s)	1562, 2034, 2411, 3231, 3400, 3426, 3534, 3598
BstSCI	CCNGG	8 cut(s)	26, 453, 1382, 2372, 2430, 2800, 3016, 3761
BstSFI	CTRYAG	9 cut(s)	512, 750, 1009, 1135, 1270, 2535, 2721, 3159, 3244
BstSNI	TACGTA	1 cut(s)	2562
BstUI	CGCG	4 cut(s)	198, 245, 2256, 2901
BstV1I	GCAGC	8 cut(s)	85, 526, 567, 1410, 1420, 1525, 1931, 3119
BstV2I	GAAGAC	4 cut(s)	39, 2510, 2590, 2772
BstX2I	RGATCY	7 cut(s)	589, 898, 1837, 2539, 2869, 2914, 3170
BstYI	RGATCY	7 cut(s)	589, 898, 1837, 2539, 2869, 2914, 3170
BstZ17I	GTATAC	1 cut(s)	1744
BstZI	CGGCCG	1 cut(s)	29
BsuI	GTATCC	2 cut(s)	842, 1450
BtgI	CCRYGG	2 cut(s)	196, 599
BtgZI	GCGATG	2 cut(s)	143, 2237
BtrI	CACGTC	1 cut(s)	160
BtsI	GCAGTG	2 cut(s)	256, 3253
BtsIMutI	CAGTG	6 cut(s)	256, 732, 1617, 2057, 2671, 3253
BtuMI	TCGCGA	1 cut(s)	2256
BveI	ACCTGC	1 cut(s)	3572
CaiI	CAGNNNCTG	2 cut(s)	2729, 2947
CfoI	GCGC	3 cut(s)	292, 1947, 2430
Cfr10I	RCCGGY	1 cut(s)	1941
Cfr13I	GGNCC	6 cut(s)	718, 2062, 2164, 2274, 3040, 3222
Cfr42I	CCGCGG	1 cut(s)	199
CseI	GACGC	2 cut(s)	103, 457
Csp6I	GTAC	7 cut(s)	253, 321, 665, 1072, 1566, 2563, 3325
CspCI	CAANNNNNGTGG	2 cut(s)	1311, 1346
CviQI	GTAC	7 cut(s)	253, 321, 665, 1072, 1566, 2563, 3325
DinI	GGCGCC	1 cut(s)	2429
DraI	TTTAAA	1 cut(s)	2284
DraIII	CACNNNGTG	1 cut(s)	1042
DriI	GACNNNNNGTC	2 cut(s)	2170, 2859
EaeI	YGGCCR	4 cut(s)	29, 1468, 3147, 3661
EagI	CGGCCG	1 cut(s)	29
Eam1104I	CTCTTC	6 cut(s)	621, 1678, 2090, 2298, 2911, 3416
Eam1105I	GACNNNNNGTC	2 cut(s)	2170, 2859
EarI	CTCTTC	6 cut(s)	621, 1678, 2090, 2298, 2911, 3416
EciI	GGCGGA	2 cut(s)	21, 143
Ecl136II	GAGCTC	1 cut(s)	142
EclXI	CGGCCG	1 cut(s)	29
Eco105I	TACGTA	1 cut(s)	2562
Eco130I	CCWWGG	6 cut(s)	174, 599, 1891, 2013, 2544, 2910
Eco147I	AGGCCT	1 cut(s)	3542
Eco24I	GRGCYC	1 cut(s)	144
Eco31I	GGTCTC	2 cut(s)	3, 1820
Eco32I	GATATC	1 cut(s)	2418
Eco47I	GGWCC	3 cut(s)	2062, 2164, 3040
Eco52I	CGGCCG	1 cut(s)	29
Eco53kI	GAGCTC	1 cut(s)	142
Eco57I	CTGAAG	1 cut(s)	1355
Eco88I	CYCGRG	1 cut(s)	209
EcoICRI	GAGCTC	1 cut(s)	142
EcoO109I	RGGNCCY	1 cut(s)	3040
EcoRI	GAATTC	2 cut(s)	230, 3011
EcoRII	CCWGG	7 cut(s)	453, 1382, 2372, 2430, 2800, 3016, 3761
EcoRV	GATATC	1 cut(s)	2418
EcoT14I	CCWWGG	6 cut(s)	174, 599, 1891, 2013, 2544, 2910
EcoT22I	ATGCAT	2 cut(s)	1021, 3625
EcoT38I	GRGCYC	1 cut(s)	144
EgeI	GGCGCC	1 cut(s)	2429
EheI	GGCGCC	1 cut(s)	2429
ErhI	CCWWGG	6 cut(s)	174, 599, 1891, 2013, 2544, 2910
FalI	AAGNNNNNCTT	4 cut(s)	779, 811, 2253, 2285
FaqI	GGGAC	2 cut(s)	460, 3605
FauI	CCCGC	1 cut(s)	2906
FauNDI	CATATG	1 cut(s)	474
FblI	GTMKAC	1 cut(s)	1743
FriOI	GRGCYC	1 cut(s)	144
FspBI	CTAG	6 cut(s)	293, 584, 902, 953, 2072, 2108
GlaI	GCGC	3 cut(s)	291, 1946, 2429
GsuI	CTGGAG	3 cut(s)	437, 3474, 3654
HaeII	RGCGCY	2 cut(s)	1948, 2431
HapII	CCGG	4 cut(s)	28, 32, 82, 1942
HgaI	GACGC	2 cut(s)	103, 457
HhaI	GCGC	3 cut(s)	292, 1947, 2430
Hin1I	GRCGYC	2 cut(s)	95, 2428
Hin6I	GCGC	3 cut(s)	290, 1945, 2428
HinP1I	GCGC	3 cut(s)	290, 1945, 2428
HincII	GTYRAC	2 cut(s)	2877, 2988
HindII	GTYRAC	2 cut(s)	2877, 2988
HindIII	AAGCTT	4 cut(s)	1178, 3089, 3436, 3641
HpaI	GTTAAC	1 cut(s)	2988
HpaII	CCGG	4 cut(s)	28, 32, 82, 1942
HphI	GGTGA	5 cut(s)	154, 490, 749, 1028, 2683
Hpy166II	GTNNAC	7 cut(s)	1036, 1234, 1744, 2573, 2877, 2988, 3068
Hpy188I	TCNGA	9 cut(s)	67, 93, 191, 1372, 1502, 1708, 2826, 2922, 2972
Hpy8I	GTNNAC	7 cut(s)	1036, 1234, 1744, 2573, 2877, 2988, 3068
Hpy99I	CGWCG	1 cut(s)	225
HpyCH4IV	ACGT	3 cut(s)	159, 2550, 2561
HpySE526I	ACGT	3 cut(s)	159, 2550, 2561
Hsp92I	GRCGYC	2 cut(s)	95, 2428
HspAI	GCGC	3 cut(s)	290, 1945, 2428
KasI	GGCGCC	1 cut(s)	2427
KroI	GCCGGC	1 cut(s)	1941
KroNI	GCCGGC	1 cut(s)	1943
KspAI	GTTAAC	1 cut(s)	2988
KspI	CCGCGG	1 cut(s)	199
LguI	GCTCTTC	1 cut(s)	2298
LmnI	GCTCC	8 cut(s)	334, 456, 513, 532, 1592, 3103, 3715, 3743
Lsp1109I	GCAGC	8 cut(s)	85, 526, 567, 1410, 1420, 1525, 1931, 3119
MaeI	CTAG	6 cut(s)	293, 584, 902, 953, 2072, 2108
MaeII	ACGT	3 cut(s)	159, 2550, 2561
MfeI	CAATTG	2 cut(s)	929, 1488
MflI	RGATCY	7 cut(s)	589, 898, 1837, 2539, 2869, 2914, 3170
MhlI	GDGCHC	2 cut(s)	144, 3740
MlsI	TGGCCA	1 cut(s)	1470
MluNI	TGGCCA	1 cut(s)	1470
Mly113I	GGCGCC	1 cut(s)	2428
MlyI	GAGTC	8 cut(s)	77, 87, 1221, 1388, 1685, 2519, 2897, 2976
MmeI	TCCRAC	1 cut(s)	3325
Mox20I	TGGCCA	1 cut(s)	1470
Mph1103I	ATGCAT	2 cut(s)	1021, 3625
MroNI	GCCGGC	1 cut(s)	1941
MroXI	GAANNNNTTC	2 cut(s)	1104, 3011
MscI	TGGCCA	1 cut(s)	1470
MseI	TTAA	4 cut(s)	1046, 1698, 2283, 2987
MslI	CAYNNNNRTG	3 cut(s)	547, 735, 3599
Msp20I	TGGCCA	1 cut(s)	1470
MspA1I	CMGCKG	2 cut(s)	198, 1901
MspI	CCGG	4 cut(s)	28, 32, 82, 1942
MspR9I	CCNGG	8 cut(s)	28, 455, 1384, 2374, 2432, 2802, 3018, 3763
MunI	CAATTG	2 cut(s)	929, 1488
Mva1269I	GAATGC	2 cut(s)	458, 2294
MvaI	CCWGG	7 cut(s)	455, 1384, 2374, 2432, 2802, 3018, 3763
MvnI	CGCG	4 cut(s)	198, 245, 2256, 2901
NaeI	GCCGGC	1 cut(s)	1943
NarI	GGCGCC	1 cut(s)	2428
NciI	CCSGG	1 cut(s)	28
NcoI	CCATGG	1 cut(s)	599
NdeI	CATATG	1 cut(s)	474
NgoMIV	GCCGGC	1 cut(s)	1941
NlaIV	GGNNCC	5 cut(s)	886, 1460, 2429, 2916, 3042
NmeAIII	GCCGAG	2 cut(s)	163, 3365
NmuCI	GTSAC	5 cut(s)	14, 160, 1342, 2434, 3582
NruI	TCGCGA	1 cut(s)	2256
NsiI	ATGCAT	2 cut(s)	1021, 3625
NspI	RCATGY	8 cut(s)	1562, 2034, 2411, 3231, 3400, 3426, 3534, 3598
OliI	CACNNNNGTG	2 cut(s)	547, 735
PaeI	GCATGC	1 cut(s)	2411
PaeR7I	CTCGAG	1 cut(s)	209
PceI	AGGCCT	1 cut(s)	3542
PciI	ACATGT	2 cut(s)	2030, 3530
PciSI	GCTCTTC	1 cut(s)	2298
PcsI	WCGNNNNNNNCGW	1 cut(s)	2619
PctI	GAATGC	2 cut(s)	458, 2294
PdiI	GCCGGC	1 cut(s)	1943
PdmI	GAANNNNTTC	2 cut(s)	1104, 3011
PflFI	GACNNNGTC	1 cut(s)	2552
PflMI	CCANNNNNTGG	1 cut(s)	475
PfoI	TCCNGGA	1 cut(s)	2800
PleI	GAGTC	8 cut(s)	76, 86, 1220, 1387, 1685, 2518, 2897, 2975
PluTI	GGCGCC	1 cut(s)	2431
PpsI	GAGTC	8 cut(s)	76, 86, 1220, 1387, 1685, 2518, 2897, 2975
Ppu21I	YACGTR	1 cut(s)	2562
PpuMI	RGGWCCY	1 cut(s)	3040
PscI	ACATGT	2 cut(s)	2030, 3530
PsiI	TTATAA	1 cut(s)	1259
Psp124BI	GAGCTC	1 cut(s)	144
Psp5II	RGGWCCY	1 cut(s)	3040
Psp6I	CCWGG	7 cut(s)	453, 1382, 2372, 2430, 2800, 3016, 3761
PspGI	CCWGG	7 cut(s)	453, 1382, 2372, 2430, 2800, 3016, 3761
PspN4I	GGNNCC	5 cut(s)	886, 1460, 2429, 2916, 3042
PspPI	GGNCC	6 cut(s)	718, 2062, 2164, 2274, 3040, 3222
PspPPI	RGGWCCY	1 cut(s)	3040
PsrI	GAACNNNNNNTAC	2 cut(s)	1558, 1590
PstI	CTGCAG	3 cut(s)	516, 754, 3248
PstNI	CAGNNNCTG	2 cut(s)	2729, 2947
PsuI	RGATCY	7 cut(s)	589, 898, 1837, 2539, 2869, 2914, 3170
PsyI	GACNNNGTC	1 cut(s)	2552
PvuII	CAGCTG	1 cut(s)	1901
RruI	TCGCGA	1 cut(s)	2256
RsaI	GTAC	7 cut(s)	254, 322, 666, 1073, 1567, 2564, 3326
RsaNI	GTAC	7 cut(s)	253, 321, 665, 1072, 1566, 2563, 3325
RseI	CAYNNNNRTG	3 cut(s)	547, 735, 3599
SacI	GAGCTC	1 cut(s)	144
SacII	CCGCGG	1 cut(s)	199
SapI	GCTCTTC	1 cut(s)	2298
SaqAI	TTAA	4 cut(s)	1046, 1698, 2283, 2987
Sau96I	GGNCC	6 cut(s)	718, 2062, 2164, 2274, 3040, 3222
ScaI	AGTACT	1 cut(s)	1567
SchI	GAGTC	8 cut(s)	77, 87, 1221, 1388, 1685, 2519, 2897, 2976
ScrFI	CCNGG	8 cut(s)	28, 455, 1384, 2374, 2432, 2802, 3018, 3763
SduI	GDGCHC	2 cut(s)	144, 3740
SfcI	CTRYAG	9 cut(s)	512, 750, 1009, 1135, 1270, 2535, 2721, 3159, 3244
SfoI	GGCGCC	1 cut(s)	2429
Sfr274I	CTCGAG	1 cut(s)	209
Sfr303I	CCGCGG	1 cut(s)	199
SgrBI	CCGCGG	1 cut(s)	199
SinI	GGWCC	3 cut(s)	2062, 2164, 3040
SlaI	CTCGAG	1 cut(s)	209
SmiMI	CAYNNNNRTG	3 cut(s)	547, 735, 3599
SmlI	CTYRAG	4 cut(s)	209, 236, 770, 1720
SmoI	CTYRAG	4 cut(s)	209, 236, 770, 1720
SnaBI	TACGTA	1 cut(s)	2562
SphI	GCATGC	1 cut(s)	2411
SseBI	AGGCCT	1 cut(s)	3542
SsiI	CCGC	8 cut(s)	6, 154, 171, 196, 198, 1216, 2899, 3576
SspDI	GGCGCC	1 cut(s)	2427
SspI	AATATT	2 cut(s)	1521, 2355
SspMI	CTAG	6 cut(s)	293, 584, 902, 953, 2072, 2108
SstI	GAGCTC	1 cut(s)	144
StuI	AGGCCT	1 cut(s)	3542
StyD4I	CCNGG	8 cut(s)	26, 453, 1382, 2372, 2430, 2800, 3016, 3761
StyI	CCWWGG	6 cut(s)	174, 599, 1891, 2013, 2544, 2910
TaiI	ACGT	3 cut(s)	162, 2553, 2564
TaqI	TCGA	4 cut(s)	210, 727, 2613, 2954
TatI	WGTACW	2 cut(s)	320, 1565
TauI	GCSGC	4 cut(s)	173, 198, 201, 3579
Tru1I	TTAA	4 cut(s)	1046, 1698, 2283, 2987
Tru9I	TTAA	4 cut(s)	1046, 1698, 2283, 2987
TscAI	CASTG	6 cut(s)	263, 739, 1624, 2064, 2671, 3253
TseFI	GTSAC	5 cut(s)	14, 160, 1342, 2434, 3582
TseI	GCWGC	8 cut(s)	73, 514, 580, 1398, 1408, 1513, 1919, 3132
Tsp45I	GTSAC	5 cut(s)	14, 160, 1342, 2434, 3582
TspGWI	ACGGA	2 cut(s)	1451, 2846
TspRI	CASTG	6 cut(s)	263, 739, 1624, 2064, 2671, 3253
Tth111I	GACNNNGTC	1 cut(s)	2552
Van91I	CCANNNNNTGG	1 cut(s)	475
VpaK11BI	GGWCC	3 cut(s)	2062, 2164, 3040
XbaI	TCTAGA	3 cut(s)	901, 952, 2107
XceI	RCATGY	8 cut(s)	1562, 2034, 2411, 3231, 3400, 3426, 3534, 3598
XcmI	CCANNNNNNNNNTGG	1 cut(s)	842
XhoI	CTCGAG	1 cut(s)	209
XmiI	GTMKAC	1 cut(s)	1743
XmnI	GAANNNNTTC	2 cut(s)	1104, 3011
XspI	CTAG	6 cut(s)	293, 584, 902, 953, 2072, 2108
ZrmI	AGTACT	1 cut(s)	1567
Zsp2I	ATGCAT	2 cut(s)	1021, 3625

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.